BAC Information

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BAC

Clone NameB6Ng01-128M18
Chromosome5 (Build37)
Map Location 69,470,694 - 69,598,843
singlet/doubletdoublet
Overlap geneKctd8
Upstream geneAY616753, LOC666996
Downstream geneLOC545756, Yipf7, Guf1, Gnpda2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128M18.bB6Ng01-128M18.g
ACCDH930553DH930554
length1,1831,083
definitionDH930553|Mus musculus domesticus DNA, BAC clone: B6Ng01-128M18, 5' end.DH930554|Mus musculus domesticus DNA, BAC clone: B6Ng01-128M18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,470,694 - 69,471,904)(69,597,753 - 69,598,843)
sequence
gaattccaggacagccagggttacactgagaaaccctgtctcaaaaaaac
aaaaataaaaaaacaaaaacaaaaacaaaccccaaaaacaacaacaacaa
caacaaaagacagagaaaagaacacatgttattttcatcttgtgtattat
agtgagtattttgaattttgcctttgatgggccaagaactatactaacat
gttatgtataatgttttacttaaccttatcttaaagtaattgctatatat
gaggaaactaaaggacagaaagtccatatcatgtattctaagacacacag
aaagaaaaatgaaaaatgaagataggaaggtgtctgtggctgaattcaaa
atctgtctatttacttatgacatgggatgaaacaaaggaatttatattaa
ataatgtgacataatccacgttatattatggcagatatgcccatatgtaa
attaatcagatatggccataagcaattaatggcagatatggctctgagaa
attttgtaaattcaacttttctctggatttgttgaaataaaacaatagac
aagaggaaaccacaattgcttttccatcattaataacgatttataccccg
aatcatgcaaaaatactttgaatacagtgaactcctagaatgggggacaa
gaaaataagataagtattgggtatctaaatcacgtctctgtcagacgtag
gcaatattgaggagctgaggtaggacatgagattactaaacttcttccaa
attttgagattattttatagccttaaactaaaagagttttcacgaaggat
cgactcatgtgaactcgcagtaaatagttcacaacttcgcatttgctagt
ttcttaccttgctacttactgccatatttcctttgacattgctgaaaatc
atatgtacctgtattaaacatccattttgcaaatcttctcttcttaactc
agtatagatacgtcattttacactgtcttcccagagtccaatgaggacaa
ttcatctgacagattctctctaggctgggtgttaacatagtttctggcag
tgcttctaagatactgatgaataggtgtacgtctatattggccaggacca
ttgcaaaaacatagcatgttagcttaacgggcaagtgcccagtctagggt
tttgacattgtcacttcctgactagatgaagtt
gaattctattgacagattttggcatggcacatatcaactccaagataact
tctcaagataaagccagaaaccagtgaccaattaattcctttttattcaa
gtgtaggtcatcagccccttcgaattccattgttagttagtacttaaata
actactcctccactctattaatattctgatttaaattggcatttcttttc
tattaaaagagctatcttcttcatcataaaaatcagtttcagtaggaagt
gtagaggggagaaaggaagaaattctgatatgcagcaggaacttaaagat
gaagatataataacgtacagacggagctcagcactgacaacaattctttc
ataatgttagttgtatactaggattttttttctaagattctttgttttca
cttcggtcaagactaaacaaacacctctgtaaacggcactgttgtaattc
aacattcaaacttaaatagaagaaaccaaaagtaatgatggagaaagaga
tgtccattctcccagggaaccaatgtttaagtaagcaattacagtggatt
atatttgtagctctgaggttagtggaggtgagccaacaaaagaaaattga
agaagcttgctgtagccttctggacacatgcacacgcgcatgcatgcacg
cacgcacgcatgcaaatcatctttagacatctactttaagttagcagtgt
agtttggatccagattttgatatctggagcatgttagtcaaatgtccaat
tctatattatgaattgcatgactctgaaacttaaaactcaagttctctgt
tttaaatatggttcccatcgtttagataagcaattgagataaaagtttga
aaagagattgagtggtgttggagagagggctcagtgtttattagtagtga
ctgcttttacaggaggacccaggttcagttctcagcacccacaaagcagc
tcacaggctttataattcagtttcacatgtctagtgctgtttctgacttt
gtgaacatgaggaatgtataagtgcacaaatatttattagacatacaggc
aattcctattcccgaacatatacattagaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_69470694_69471904
seq2: B6Ng01-128M18.b_45_1227

seq1  GAATTCCAGGACAGCCAGGGTTACACTGAGAAACCCTGTCTCAAAAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGTTACACTGAGAAACCCTGTCTCAAAAAAAC  50

seq1  AAAAATAAAAAAACAAAAACAAAAACAAACCCCAAAAACAACAACAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAAAAAACAAAAACAAAAACAAACCCCAAAAACAACAACAACAA  100

seq1  CAACAAAAGACAGAGAAAAGAACACATGTTATTTTCATCTTGTGTATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAAGACAGAGAAAAGAACACATGTTATTTTCATCTTGTGTATTAT  150

seq1  AGTGAGTATTTTGAATTTTGCCTTTGATGGGCCAAGAACTATACTAACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTATTTTGAATTTTGCCTTTGATGGGCCAAGAACTATACTAACAT  200

seq1  GTTATGTATAATGTTTTACTTAACCTTATCTTAAAGTAATTGCTATATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGTATAATGTTTTACTTAACCTTATCTTAAAGTAATTGCTATATAT  250

seq1  GAGGAAACTAAAGGACAGAAAGTCCATATCATGTATTCTAAGACACACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAACTAAAGGACAGAAAGTCCATATCATGTATTCTAAGACACACAG  300

seq1  AAAGAAAAATGAAAAATGAAGATAGGAAGGTGTCTGTGGCTGAATTCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAATGAAAAATGAAGATAGGAAGGTGTCTGTGGCTGAATTCAAA  350

seq1  ATCTGTCTATTTACTTATGACATGGGATGAAACAAAGGAATTTATATTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCTATTTACTTATGACATGGGATGAAACAAAGGAATTTATATTAA  400

seq1  ATAATGTGACATAATCCACGTTATATTATGGCAGATATGCCCATATGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTGACATAATCCACGTTATATTATGGCAGATATGCCCATATGTAA  450

seq1  ATTAATCAGATATGGCCATAAGCAATTAATGGCAGATATGGCTCTGAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATCAGATATGGCCATAAGCAATTAATGGCAGATATGGCTCTGAGAA  500

seq1  ATTTTGTAAATTCAACTTTTCTCTGGATTTGTTGAAATAAAACAATAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTAAATTCAACTTTTCTCTGGATTTGTTGAAATAAAACAATAGAC  550

seq1  AAGAGGAAACCACAATTGCTTTTCCATCATTAATAACGATTTATACCCCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAAACCACAATTGCTTTTCCATCATTAATAACGATTTATACCCCG  600

seq1  AATCATGCAAAAATACTTTGAATACAGTGAACTCCTAGAATGGGGGACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGCAAAAATACTTTGAATACAGTGAACTCCTAGAATGGGGGACAA  650

seq1  GAAAATAAGATAAGTATTGGGTATCTAAATCACGTCTCTGTCAGACGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAGATAAGTATTGGGTATCTAAATCACGTCTCTGTCAGACGTAG  700

seq1  GCAATATTGAGGAGCTGAGGTAGGACATGAGATTACTAAACTTCTTCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATATTGAGGAGCTGAGGTAGGACATGAGATTACTAAACTTCTTCCAA  750

seq1  ATTTTGAGATTATTTTATAGCCTTAAACTAAAAGAGTTTTCAGGAAGGAT  800
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATTTTGAGATTATTTTATAGCCTTAAACTAAAAGAGTTTTCACGAAGGAT  800

seq1  CGACTCATGTGAACTCGCAGTAAATAGTTCACAACTTCGCATTTGCTAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTCATGTGAACTCGCAGTAAATAGTTCACAACTTCGCATTTGCTAGT  850

seq1  TTCTTACCTTGCTACTTACTGCCATATTTCCTTTGACATTGCTGAAAATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACCTTGCTACTTACTGCCATATTTCCTTTGACATTGCTGAAAATC  900

seq1  ATATGTACCTGTATTAAAACATCCATTTTGCAAAATCTTCTCTTCTTAAC  950
      ||||||||||||||| ||||||||||||||| ||||||||||||||||||
seq2  ATATGTACCTGTATT-AAACATCCATTTTGC-AAATCTTCTCTTCTTAAC  948

seq1  TCAGTAATAGATACGTCATTTTTACAACTGTCTTCCCCAGAGTCCCAATG  1000
      ||||| |||||||||||| |||||| |||||||| |||||||| ||||||
seq2  TCAGT-ATAGATACGTCA-TTTTAC-ACTGTCTT-CCCAGAGT-CCAATG  993

seq1  AGGGACAATTCATCCTGACCAGATTCTCTCTAGGCTGGGTGTTAACATAG  1050
      | ||||||||||| |||| |||||||||||||||||||||||||||||||
seq2  A-GGACAATTCAT-CTGA-CAGATTCTCTCTAGGCTGGGTGTTAACATAG  1040

seq1  TTTCTGGCCAGTGCTTCTAAGATACTGAATGAATAGTTGTACGTCTATAA  1100
      ||||||| ||||||||||||||||||| |||||||| |||||||||||| 
seq2  TTTCTGG-CAGTGCTTCTAAGATACTG-ATGAATAGGTGTACGTCTATA-  1087

seq1  TTTGCACAGGGACCATTGCAGAAAACCATAGCATGTTAGGCTTAGCGGAG  1150
       |||  || ||||||||||  |||| |||||||||||| ||||| ||| |
seq2  -TTGGCCA-GGACCATTGC--AAAAACATAGCATGTTA-GCTTAACGG-G  1131

seq1  CAAAGTGCCACAGTCTAGGTGTTTTGGACAATTGTCAACTTCCTTGATCT  1200
      | ||||||| ||||||||| ||||| ||| |||||| |||||| ||| ||
seq2  C-AAGTGCC-CAGTCTAGG-GTTTT-GAC-ATTGTC-ACTTCC-TGA-CT  1173

seq1  AAGATGAAGTT  1211
       ||||||||||
seq2  -AGATGAAGTT  1183

seq1: chr5_69597753_69598843
seq2: B6Ng01-128M18.g_66_1148 (reverse)

seq1  TTTTTCTAATGTATTAATGTTTGGGGAATGAGAATTTGCCTGTATGTCTA  50
      ||||||||||||||  ||| || |||||| || | |||||||||||||||
seq2  TTTTTCTAATGTAT--ATG-TTCGGGAAT-AGGAATTGCCTGTATGTCTA  46

seq1  TATAAATATTTGTGCACTTTATACATTCTTCATGTTCACAGAGGTCAGAA  100
       |||||||||||||||| |||||||||| ||||||||||| | |||||||
seq2  -ATAAATATTTGTGCAC-TTATACATTCCTCATGTTCACA-AAGTCAGAA  93

seq1  GACAGCACTAGACATGTGGAACTGGAATTATAAAGGCTGTGAGCTGCTTT  150
       ||||||||||||||||| |||| ||||||||||| ||||||||||||||
seq2  -ACAGCACTAGACATGTGAAACT-GAATTATAAAGCCTGTGAGCTGCTTT  141

seq1  GTGGGTGCTGAGAACTGAACCTGGGTCCT-CTGTAAAAGCAGTCACTACT  199
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTGGGTGCTGAGAACTGAACCTGGGTCCTCCTGTAAAAGCAGTCACTACT  191

seq1  AATAAACACTGAGCCCTCTCTCCAACACCACTCAATCTCTTTTCAAACTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACACTGAGCCCTCTCTCCAACACCACTCAATCTCTTTTCAAACTT  241

seq1  TTATCTCAATTGCTTATCTAAACGATGGGAACCATATTTAAAACAGAGAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCAATTGCTTATCTAAACGATGGGAACCATATTTAAAACAGAGAA  291

seq1  CTTGAGTTTTAAGTTTCAGAGTCATGCAATTCATAATATAGAATTGGACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTTTTAAGTTTCAGAGTCATGCAATTCATAATATAGAATTGGACA  341

seq1  TTTGACTAACATGCTCCAGATATCAAAATCTGGATCCAAACTACACTGCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTAACATGCTCCAGATATCAAAATCTGGATCCAAACTACACTGCT  391

seq1  AACTTAAAGTAGATGTCTAAAGATGATTTGCATGCGTGCGTGCGTGCATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAAGTAGATGTCTAAAGATGATTTGCATGCGTGCGTGCGTGCATG  441

seq1  CATGCGCGTGTGCATGTGTCCAGAAGGCTACAGCAAGCTTCTTCAATTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCGCGTGTGCATGTGTCCAGAAGGCTACAGCAAGCTTCTTCAATTTT  491

seq1  CTTTTGTTGGCTCACCTCCACTAACCTCAGAGCTACAAATATAATCCACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTTGGCTCACCTCCACTAACCTCAGAGCTACAAATATAATCCACT  541

seq1  GTAATTGCTTACTTAAACATTGGTTCCCTGGGAGAATGGACATCTCTTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTGCTTACTTAAACATTGGTTCCCTGGGAGAATGGACATCTCTTTC  591

seq1  TCCATCATTACTTTTGGTTTCTTCTATTTAAGTTTGAATGTTGAATTACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCATTACTTTTGGTTTCTTCTATTTAAGTTTGAATGTTGAATTACA  641

seq1  ACAGTGCCGTTTACAGAGGTGTTTGTTTAGTCTTGACCGAAGTGAAAACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCCGTTTACAGAGGTGTTTGTTTAGTCTTGACCGAAGTGAAAACA  691

seq1  AAGAATCTTAGAAAAAAAATCCTAGTATACAACTAACATTATGAAAGAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCTTAGAAAAAAAATCCTAGTATACAACTAACATTATGAAAGAAT  741

seq1  TGTTGTCAGTGCTGAGCTCCGTCTGTACGTTATTATATCTTCATCTTTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCAGTGCTGAGCTCCGTCTGTACGTTATTATATCTTCATCTTTAA  791

seq1  GTTCCTGCTGCATATCAGAATTTCTTCCTTTCTCCCCTCTACACTTCCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGCTGCATATCAGAATTTCTTCCTTTCTCCCCTCTACACTTCCTA  841

seq1  CTGAAACTGATTTTTATGATGAAGAAGATAGCTCTTTTAATAGAAAAGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACTGATTTTTATGATGAAGAAGATAGCTCTTTTAATAGAAAAGAA  891

seq1  ATGCCAATTTAAATCAGAATATTAATAGAGTGGAGGAGTAGTTATTTAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAATTTAAATCAGAATATTAATAGAGTGGAGGAGTAGTTATTTAAG  941

seq1  TACTAACTAACAATGGAATTCGAAGGGGCTGATGACCTACACTTGAATAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAACTAACAATGGAATTCGAAGGGGCTGATGACCTACACTTGAATAA  991

seq1  AAAGGAATTAATTGGTCACTGGTTTCTGGCTTTATCTTGAGAAGTTATCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAATTAATTGGTCACTGGTTTCTGGCTTTATCTTGAGAAGTTATCT  1041

seq1  TGGAGTTGATATGTGCCATGCCAAAATCTGTCAATAGAATTC  1091
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTTGATATGTGCCATGCCAAAATCTGTCAATAGAATTC  1083