BAC Information

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BAC

Clone NameB6Ng01-129A22
Chromosome5 (Build37)
Map Location 108,698,741 - 108,823,953
singlet/doubletdoublet
Overlap geneDr1, Pigg, Pde6b
Upstream geneTgfbr3, Brdt, LOC666535, Abhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn, AW060207, Gfi1, LOC100042473, Evi5, 1700013N18Rik, Rpl5, 2900024C23Rik, LOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614
Downstream geneAtp5k, Mfsd7, Pcgf3, LOC100042557, Cplx1, LOC100042571, Gak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1, LOC671564, 1810008K16Rik, EG627479, EG435864, EG667087, LOC100041615, V2r16, LOC545792, EG384219, Vmn2r12, LOC231589, EG231591, LOC667128, EG211223, EG384220
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129A22.bB6Ng01-129A22.g
ACCDH930744DH930745
length1,122978
definitionDH930744|Mus musculus domesticus DNA, BAC clone: B6Ng01-129A22, 5' end.DH930745|Mus musculus domesticus DNA, BAC clone: B6Ng01-129A22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,698,741 - 108,699,866)(108,822,969 - 108,823,953)
sequence
gaattcattcaccttatatcttctgaagccaacgagatttgtaacaagtc
agaaaagaagacaatttcaccagagcatgttatacaaggtaagcgatttg
tgtgggatttggtttcgatgaaggatcaggggaacagtcaagctaataga
gtaaccacttggcgtcacagagccttcattccacttcactagtaagcaca
gttaatgaaaagtcaaaacggcatagagacagcttgtaccttaagaaaac
acctatgtagcattcttctgacattgttttcatccggctagtgcaaataa
ggagtgcagacattagggtcaacagacatccgcaacccctcactagtaca
gtttccaatcaggtcttaaaacaacaagaattgactgcccacagctaaac
gtggataataacaactgagaaaggaaactcaaagttctctcttggaaagt
taaattttagaacttcgagcatgagttgagtcagagagtacctctccctc
acctgtatcgaggaaaagattcatttttgaacacaggggtaggaaaaacc
cttgggctggtgacggaggtcagtggtgtatcatctagcaatcttgcaca
agggtcctagcattgagttaaaaaaaaatattgacatgagtgtgttaagt
gttgtaaagttaattgcttttcaaaaaggaagtatatttttgctttaaaa
tcgctaagaaggtggaacagtcatcaccaggtaaccaaagcgagcaccac
atttttttctttttgactccctccaactattgattgttctttgaagatta
tttgtaaaagatgactggggcagggcgggaacgacagtcctggggcttga
acgtagggcctgacacacgctagtcagcattctgttgccggtccttctcg
cctgctggtcccctttggatgtgtttatacatttatcttttattgaaaag
cacatctaaaagtttcgacagtttcttccttatgctggaaaagactagag
actttgatggttacaggaaaaggagacaaaagtgctcttggcaaatttgg
agtactttcttggtggtttttcatgaactcttaggagagtgcattcagtt
tggagaagtcaccttctgtttt
gaattctggctttgagtgccctacttttccaattatcaagttataatagt
aggtctggggaccaggggattggggattactgcctcttggctttcttgct
tcaaggttcgtatgtctgagattatttatatgagaaatcatttctctaat
tgtatttgtataagtcaaatttgataaaatgaaacttacctaacaaatct
ttttggaaaaaaaaatcagtgtagctaaaagaattacttctaaagaaaaa
atatctgttattatactataactgctcactaccttttaattttcttgctt
tcaattcttgaggtcaacaattactcttttctaaagatctacagagctag
agcagtaccgcttgatgcaaatttcaaatatagagtcttgaaaatggtct
gatgtcacaggtaaagcagaaatggcaaaagagtatgaaaaaactacagt
cagaataagaccatatcataagactctgacccttacttttctttgtgaga
aggatgatgatattgttaagatatacatacaagccaggcgtggtggcaca
cacctttaataccagcagtcaggaggcaggggcaggtggatttctgagtt
caaggctagcctggtctacaaagtgagttccaggacagccagggctacac
agaaaaatcttgtcttgaaaaacaaaacaaaacaaaacaaaacaaaacaa
aacaaaacaaacaaaacaaaacaaaacaaaacaaacaaaccagccccaca
aaacaagggaaaggctcagttaccatagtaagtcccacaaactcctctgt
ggtcatctgatttgttcattgggttaccctttgagcttaggtttgtgtaa
tagatgccaaacaacatttgcttcactcatagactgctcagcagttatga
gagaagctcatctgtagcagatgggaataaatacagagacccatagacag
tgtgcaggggaggagaaggggggagagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_108698741_108699866
seq2: B6Ng01-129A22.b_49_1170

seq1  GAATTCATTCACCTTATATCTTCTGAAGCCAACGAGATTTGTAACAAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCACCTTATATCTTCTGAAGCCAACGAGATTTGTAACAAGTC  50

seq1  AGAAAAGAAGACAATTTCACCAGAGCATGTTATACAAGGTAAGCGATTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAAGACAATTTCACCAGAGCATGTTATACAAGGTAAGCGATTTG  100

seq1  TGTGGGATTTGGTTTCGATGAAGGATCAGGGGAACAGTCAAGCTAATAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGATTTGGTTTCGATGAAGGATCAGGGGAACAGTCAAGCTAATAGA  150

seq1  GTAACCACTTGGCGTCACAGAGCCTTCATTCCACTTCACTAGTAAGCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCACTTGGCGTCACAGAGCCTTCATTCCACTTCACTAGTAAGCACA  200

seq1  GTTAATGAAAAGTCAAAACGGCATAGAGACAGCTTGTACCTTAAGAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGAAAAGTCAAAACGGCATAGAGACAGCTTGTACCTTAAGAAAAC  250

seq1  ACCTATGTAGCATTCTTCTGACATTGTTTTCATCCGGCTAGTGCAAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATGTAGCATTCTTCTGACATTGTTTTCATCCGGCTAGTGCAAATAA  300

seq1  GGAGTGCAGACATTAGGGTCAACAGACATCCGCAACCCCTCACTAGTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGCAGACATTAGGGTCAACAGACATCCGCAACCCCTCACTAGTACA  350

seq1  GTTTCCAATCAGGTCTTAAAACAACAAGAATTGACTGCCCACAGCTAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCAATCAGGTCTTAAAACAACAAGAATTGACTGCCCACAGCTAAAC  400

seq1  GTGGATAATAACAACTGAGAAAGGAAACTCAAAGTTCTCTCTTGGAAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATAATAACAACTGAGAAAGGAAACTCAAAGTTCTCTCTTGGAAAGT  450

seq1  TAAATTTTAGAACTTCGAGCATGAGTTGAGTCAGAGAGTACCTCTCCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTTAGAACTTCGAGCATGAGTTGAGTCAGAGAGTACCTCTCCCTC  500

seq1  ACCTGTATCGAGGAAAAGATTCATTTTTGAACACAGGGGTAGGAAAAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTATCGAGGAAAAGATTCATTTTTGAACACAGGGGTAGGAAAAACC  550

seq1  CTTGGGCTGGTGACGGAGGTCAGTGGTGTATCATCTAGCAATCTTGCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGCTGGTGACGGAGGTCAGTGGTGTATCATCTAGCAATCTTGCACA  600

seq1  AGGGTCCTAGCATTGAGTTAAAAAAAAATATTGACATGAGTGTGTTAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCCTAGCATTGAGTTAAAAAAAAATATTGACATGAGTGTGTTAAGT  650

seq1  GTTGTAAAGTTAATTGCTTTTCAAAAAGGAAGTATATTTTTGCTTTAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAAAGTTAATTGCTTTTCAAAAAGGAAGTATATTTTTGCTTTAAAA  700

seq1  TCGCTAAGAAGGTGGAACAGTCATCACCAGGTAACCAAAGCGAGCACCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTAAGAAGGTGGAACAGTCATCACCAGGTAACCAAAGCGAGCACCAC  750

seq1  ATTTTTTTCTTTTTGACTCCCTCCAACTATTGATTGTTCTTTGAAGATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTCTTTTTGACTCCCTCCAACTATTGATTGTTCTTTGAAGATTA  800

seq1  TTTGTAAAAGATGACTGGGGCAGGGCGGGAACGACAGTCCTGGGGCTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAAAGATGACTGGGGCAGGGCGGGAACGACAGTCCTGGGGCTTGA  850

seq1  ACGTAGGGCCTGACACACGCTAGTCAGCATTCTGTTGCCGGTCCTTCTCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAGGGCCTGACACACGCTAGTCAGCATTCTGTTGCCGGTCCTTCTCG  900

seq1  CCTGCTGGTCCCCTTTGGATGTGTTTATACATTTATCTTTTATTGAAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGGTCCCCTTTGGATGTGTTTATACATTTATCTTTTATTGAAAAG  950

seq1  CACATCTAAAAGTTTCGACAGTTTCTTCCTTATGCTGGAAAAGACTAGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CACATCTAAAAGTTTCGACAGTTTCTTCCTTATGCTGGAAAAGACTA-GA  999

seq1  GACTTTGATGGTTACAGGAAAAGGAGACAAAAGTGCTCTTGGCAAATTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GACTTTGATGGTTACAGGAAAAGGAGACAAAAGTGCTCTTGGCAAATTT-  1048

seq1  GGGAAGTACTTTCT--GTGGTTTTTCATGAACTCTTAGGAGAAGGTTGCA  1098
        | ||||||||||  ||||||||||||||||||||||||||    ||||
seq2  --GGAGTACTTTCTTGGTGGTTTTTCATGAACTCTTAGGAGA---GTGCA  1093

seq1  TTCAGTTT-GAGACAGTCA-CTTCTGTTTT  1126
      |||||||| |||| ||||| ||||||||||
seq2  TTCAGTTTGGAGA-AGTCACCTTCTGTTTT  1122

seq1: chr5_108822969_108823953
seq2: B6Ng01-129A22.g_66_1043 (reverse)

seq1  CCTCT-CCCCCTTCTCCTCCCCCTGCACACTGTCTATGGGTCTCTGTATT  49
      ||||| |||||||||||| |||||||||||||||||||||||||||||||
seq2  CCTCTCCCCCCTTCTCCT-CCCCTGCACACTGTCTATGGGTCTCTGTATT  49

seq1  TATTCCCATCTGCTACAGGATGAGGCTTCTCTCATAACTGCTGAGCAGGT  99
      ||||||||||||||||| ||||| ||||||||||||||||||||||| ||
seq2  TATTCCCATCTGCTACA-GATGA-GCTTCTCTCATAACTGCTGAGCA-GT  96

seq1  CTATGAGTGAAGCAAAATGTTGTTTGGCATCTATTACACAAACCTAAGCT  149
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTATGAGTGAAGC-AAATGTTGTTTGGCATCTATTACACAAACCTAAGCT  145

seq1  CAAAGGGTAA-CCAATGAAACAAATCAGATGACCACAGAGGAGTTTGTGG  198
      |||||||||| |||||| ||||||||||||||||||||||||||||||||
seq2  CAAAGGGTAACCCAATG-AACAAATCAGATGACCACAGAGGAGTTTGTGG  194

seq1  GACTTACTATGGTAACTGAGCCTTTCCCTTGTTTTGTGGGGCTGGTTTTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  GACTTACTATGGTAACTGAGCCTTTCCCTTGTTTTGTGGGGCTGGTTT--  242

seq1  TTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTG  298
       |||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTTTGTTTTGTTTTGTTTTGTTTTG-TTTGTTTTGTTTTGTTTTGTTTTG  291

seq1  TTTTGTTTTGTTTTGTTTTTCAAGACAAGATTTTTCTGTGTAGCCCTGGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTGTTTTGTTTTTCAAGACAAGATTTTTCTGTGTAGCCCTGGC  341

seq1  TGTCCTGGAACTCACTTTGTAGACCAGGCTAGCCTTGAACTCAGAAATCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGAACTCACTTTGTAGACCAGGCTAGCCTTGAACTCAGAAATCC  391

seq1  ACCTGCCCCTGCCTCCTGACTGCTGGTATTAAAGGTGTGTGCCACCACGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCCCTGCCTCCTGACTGCTGGTATTAAAGGTGTGTGCCACCACGC  441

seq1  CTGGCTTGTATGTATATCTTAACAATATCATCATCCTTCTCACAAAGAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTGTATGTATATCTTAACAATATCATCATCCTTCTCACAAAGAAA  491

seq1  AGTAAGGGTCAGAGTCTTATGATATGGTCTTATTCTGACTGTAGTTTTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGGGTCAGAGTCTTATGATATGGTCTTATTCTGACTGTAGTTTTTT  541

seq1  CATACTCTTTTGCCATTTCTGCTTTACCTGTGACATCAGACCATTTTCAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTCTTTTGCCATTTCTGCTTTACCTGTGACATCAGACCATTTTCAA  591

seq1  GACTCTATATTTGAAATTTGCATCAAGCGGTACTGCTCTAGCTCTGTAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTATATTTGAAATTTGCATCAAGCGGTACTGCTCTAGCTCTGTAGA  641

seq1  TCTTTAGAAAAGAGTAATTGTTGACCTCAAGAATTGAAAGCAAGAAAATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGAAAAGAGTAATTGTTGACCTCAAGAATTGAAAGCAAGAAAATT  691

seq1  AAAAGGTAGTGAGCAGTTATAGTATAATAACAGATATTTTTTCTTTAGAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTAGTGAGCAGTTATAGTATAATAACAGATATTTTTTCTTTAGAA  741

seq1  GTAATTCTTTTAGCTACACTGATTTTTTTTTCCAAAAAGATTTGTTAGGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTCTTTTAGCTACACTGATTTTTTTTTCCAAAAAGATTTGTTAGGT  791

seq1  AAGTTTCATTTTATCAAATTTGACTTATACAAATACAATTAGAGAAATGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCATTTTATCAAATTTGACTTATACAAATACAATTAGAGAAATGA  841

seq1  TTTCTCATATAAATAATCTCAGACATACGAACCTTGAAGCAAGAAAGCCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCATATAAATAATCTCAGACATACGAACCTTGAAGCAAGAAAGCCA  891

seq1  AGAGGCAGTAATCCCCAATCCCCTGGTCCCCAGACCTACTATTATAACTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGTAATCCCCAATCCCCTGGTCCCCAGACCTACTATTATAACTT  941

seq1  GATAATTGGAAAAGTAGGGCACTCAAAGCCAGAATTC  985
      |||||||||||||||||||||||||||||||||||||
seq2  GATAATTGGAAAAGTAGGGCACTCAAAGCCAGAATTC  978