BAC Information

Click to search

BAC

Clone NameB6Ng01-129F18
Chromosome5 (Build37)
Map Location 55,459,016 - 55,584,446
singlet/doubletdoublet
Overlap genenone
Upstream geneStim2, EG666377, LOC666380
Downstream geneEG666405
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129F18.bB6Ng01-129F18.g
ACCDH930961DH930962
length1,1661,190
definitionDH930961|Mus musculus domesticus DNA, BAC clone: B6Ng01-129F18, 5' end.DH930962|Mus musculus domesticus DNA, BAC clone: B6Ng01-129F18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,583,266 - 55,584,446)(55,459,016 - 55,460,171)
sequence
gaattcactctatactgttgaccaggctggccaaaatctcagaaatacag
ttggatttcttgaactgcttaatattggtgtgcatgtttgtcatcacaat
tggtaaggtttggtgagtcagtctttcaatactctcttttctgccttctc
tctctctcacagttcctagttcctacttgataatatctttttgttcattt
taggtctctttcctttctgattttttttattctttgcttttgtgcctcat
atgtaataacttatactgtactatcttcaaagcagatggagatgaccaac
gaactcagccccaatatagaaaaaaggcaaattgaaatatatcacagcta
acttaattaggttaaattgtaattattttcagaaaataaaccatgtatgt
aaaatatgaaaatatttatttattacatttagtatcttaatcctgaaatt
attaatattcttgtaattcttcaaaagtattcaaatccaggtcatgttgt
ataaaactaaatatataatcttatacatacatatgcatgataataaaact
cctagcacttcaagagatacattcaagagaaatatataagctgtttaatc
tgaaaagcacgcaaattagagaattgaacaatgagtaatgaaaatatatc
acaactgaaatatctcattagatgtaatgcattatatttcatgctaccca
tttatacaggcactacaatgcctgacaatatgcactatgagtgatgaagt
ttatatatttaagaccagagacttacgtaatagcaagtgccaaacaactg
cattgtaagtacataattttgagaaagaatgggcattagaacaagcctat
tttgattgtataaattcacacataaatatctttttacaaaagacaatttg
aaatgttttattcattaaattattatatatgcagttcatgatatcacaga
tgataattcccaaaaactccatgaaagtttgacagtagaaattctgacaa
aattattatgacagtctaaatattagtgaccaatgataacccaatacttt
ttgttttctagaagtaaacttgatcttaattattctttgatcttcatgca
tgaacgaaatagaaatatacgatatttaggtatattgcatgcttcatacc
atcagtcaatgaattt
gaattctttccttagctctctttaatagggttatttgattttctggagtc
caactttttgattgttgtgagccgacccgcagctcacaagaaacaggggt
acacctgggaggcagactggagttgaaagagagagaactagacagtcgag
agaaataatggaagccaagatgatccactgttcaaggctccaatgtttat
taaaatccgcacttataaaggggggaaccccaccccctgccacgccaagt
ttcttgatgttgtgatgccaagttgttagcacagccttttagcagtaagt
tgccaatttcacaggttgcagttaactcaggaaaatctcaaagacagttt
cagcctctcggcagggggtaggcagtgtcatatcaaaggaaaccatccta
gtcagaagagctcacagcaggtggccccacctcagtggcacaaggtatga
accagcctgctttaggctgggggaggttacatttcccccctgttcatata
attaaaatagctggacagaggcatcaaattttatttttgctccataactc
ctgcctgggagttatggtggctggcggctgcacctgacttaggaaatctt
agatcttcctgaaccattcaatcccgtcatagagggtatgtgcagcttgt
ttgtgtttattttacacaaaacatggctctgtggtgtattattagcaacc
acggtctcttggcatggacctctgtcttagattgatatgatcccgagatc
tgggtgcccgtctttagctgtcccggacctcagagcacaccttattccca
attcagaccaaagccacaatatatacttaaaatgcttcttcatatagatt
aataactgccacctgtgctgttggaggcgaggctgcagacttgctgcaat
caggctgaaggtgtgctgaccttagaggtcttgtcaggcaatccagacaa
tttataaatgtccaaaacagtctcttaaaagaacagcatttttttcttat
gagtagcataagcattgcaaactgagaattaatagcatctgttgcctcat
gcccggatatggatccttttcttttctttccctcccggactccccacacc
aagcaaggttccttcgcattttctgcatctttaagtcctgtttcgacaac
tgtggaccgacctgagctccacaagaaacaggggttcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_55583266_55584446
seq2: B6Ng01-129F18.b_47_1212 (reverse)

seq1  AAATTCAATTGACTGATGGGTATGGTAGCATGCAATTATTACTTTAAATA  50
      |||||| |||||||||| ||||| | ||||||||||   |||  ||||||
seq2  AAATTC-ATTGACTGAT-GGTAT-GAAGCATGCAAT--ATAC-CTAAATA  44

seq1  TCCTTATA-TTCTATTTCTGTTTCATGCATGAAAGATCAAAGAATAA-TA  98
      | | |||| |||||||||   |||||||||| ||||||||||||||| ||
seq2  T-CGTATATTTCTATTTC--GTTCATGCATG-AAGATCAAAGAATAATTA  90

seq1  AGATCAAGTTTACTTCTAGAAAACAAAAAGTATTGGGTTTATCATTGGTT  148
      ||||||||||||||||||||||||||||||||||||| |||||||||| |
seq2  AGATCAAGTTTACTTCTAGAAAACAAAAAGTATTGGG-TTATCATTGG-T  138

seq1  CACTAATATTTAGACTGTCATAATTAATTTTGTCAGAATTTTCTACTTGT  198
      ||||||||||||||||||||||| |||||||||||||| ||||||| |||
seq2  CACTAATATTTAGACTGTCATAA-TAATTTTGTCAGAA-TTTCTAC-TGT  185

seq1  CAAACTTTCATGGAGTTTTTTGGGAATTATCATCTGTGATATCATGAACT  248
      ||||||||||||||| ||||||||||||||||||||||||||||||||| 
seq2  CAAACTTTCATGGAG-TTTTTGGGAATTATCATCTGTGATATCATGAAC-  233

seq1  TGCATATATAATAATTTAATGAATAAAACATTTCAAATTGTCTTTTGTAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATATAATAATTTAATGAATAAAACATTTCAAATTGTCTTTTGTAA  283

seq1  AAAGATATTTATGTGTGAATTTATACAATCAAAATAGGCTTGTTCTAATG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATATTTATGTGTGAATTTATACAATCAAAATAGGCTTGTTCTAATG  333

seq1  CCCATTCTTTCTCAAAATTATGTACTTACAATGCAGTTGTTTGGCACTTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTCTTTCTCAAAATTATGTACTTACAATGCAGTTGTTTGGCACTTG  383

seq1  CTATTACGTAAGTCTCTGGTCTTAAATATATAAACTTCATCACTCATAGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTACGTAAGTCTCTGGTCTTAAATATATAAACTTCATCACTCATAGT  433

seq1  GCATATTGTCAGGCATTGTAGTGCCTGTATAAATGGGTAGCATGAAATAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATTGTCAGGCATTGTAGTGCCTGTATAAATGGGTAGCATGAAATAT  483

seq1  AATGCATTACATCTAATGAGATATTTCAGTTGTGATATATTTTCATTACT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATTACATCTAATGAGATATTTCAGTTGTGATATATTTTCATTACT  533

seq1  CATTGTTCAATTCTCTAATTTGCGTGCTTTTCAGATTAAACAGCTTATAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTCAATTCTCTAATTTGCGTGCTTTTCAGATTAAACAGCTTATAT  583

seq1  ATTTCTCTTGAATGTATCTCTTGAAGTGCTAGGAGTTTTATTATCATGCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTTGAATGTATCTCTTGAAGTGCTAGGAGTTTTATTATCATGCA  633

seq1  TATGTATGTATAAGATTATATATTTAGTTTTATACAACATGACCTGGATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATGTATAAGATTATATATTTAGTTTTATACAACATGACCTGGATT  683

seq1  TGAATACTTTTGAAGAATTACAAGAATATTAATAATTTCAGGATTAAGAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATACTTTTGAAGAATTACAAGAATATTAATAATTTCAGGATTAAGAT  733

seq1  ACTAAATGTAATAAATAAATATTTTCATATTTTACATACATGGTTTATTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATGTAATAAATAAATATTTTCATATTTTACATACATGGTTTATTT  783

seq1  TCTGAAAATAATTACAATTTAACCTAATTAAGTTAGCTGTGATATATTTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAATAATTACAATTTAACCTAATTAAGTTAGCTGTGATATATTTC  833

seq1  AATTTGCCTTTTTTCTATATTGGGGCTGAGTTCGTTGGTCATCTCCATCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCCTTTTTTCTATATTGGGGCTGAGTTCGTTGGTCATCTCCATCT  883

seq1  GCTTTGAAGATAGTACAGTATAAGTTATTACATATGAGGCACAAAAGCAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGAAGATAGTACAGTATAAGTTATTACATATGAGGCACAAAAGCAA  933

seq1  AGAATAAAAAAAATCAGAAAGGAAAGAGACCTAAAATGAACAAAAAGATA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAAAAAAATCAGAAAGGAAAGAGACCTAAAATGAACAAAAAGATA  983

seq1  TTATCAAGTAGGAACTAGGAACTGTGAGAGAGAGAGAAGGCAGAAAAGAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAAGTAGGAACTAGGAACTGTGAGAGAGAGAGAAGGCAGAAAAGAG  1033

seq1  AGTATTGAAAGACTGACTCACCAAACCTTACCAATTGTGATGACAAACAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTGAAAGACTGACTCACCAAACCTTACCAATTGTGATGACAAACAT  1083

seq1  GCACACCAATATTAAGCAGTTCAAGAAATCCAACTGTATTTCTGAGATTT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACCAATATTAAGCAGTTCAAGAAATCCAACTGTATTTCTGAGATTT  1133

seq1  TGGCCAGCCTGGTCAACAGTATAGAGTGAATTC  1181
      |||||||||||||||||||||||||||||||||
seq2  TGGCCAGCCTGGTCAACAGTATAGAGTGAATTC  1166

seq1: chr5_55459016_55460171
seq2: B6Ng01-129F18.g_124_1256

seq1  TTGATTGTTGTGAGCCGACCCGCAGCTCACAAGAAACAGGGGTACACCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGTTGTGAGCCGACCCGCAGCTCACAAGAAACAGGGGTACACCTG  50

seq1  GGAGGCAGACTGGAGTTGAAAGAGAGAGAACTAGACAGTCGAGAGAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGACTGGAGTTGAAAGAGAGAGAACTAGACAGTCGAGAGAAATA  100

seq1  ATGGAAGCCAAGATGATCCACTGTTCAAGGCTCCAATGTTTATTAAAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGCCAAGATGATCCACTGTTCAAGGCTCCAATGTTTATTAAAATC  150

seq1  CGCACTTATAAAGGGGGGAACCCCACCCCCTGCCACGCCAAGTTTCTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACTTATAAAGGGGGGAACCCCACCCCCTGCCACGCCAAGTTTCTTGA  200

seq1  TGTTGTGATGCCAAGTTGTTAGCACAGCCTTTTAGCAGTAAGTTGCCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGATGCCAAGTTGTTAGCACAGCCTTTTAGCAGTAAGTTGCCAAT  250

seq1  TTCACAGGTTGCAGTTAACTCAGGAAAATCTCAAAGACAGTTTCAGCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGGTTGCAGTTAACTCAGGAAAATCTCAAAGACAGTTTCAGCCTC  300

seq1  TCGGCAGGGGGTAGGCAGTGTCATATCAAAGGAAACCATCCTAGTCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCAGGGGGTAGGCAGTGTCATATCAAAGGAAACCATCCTAGTCAGAA  350

seq1  GAGCTCACAGCAGGTGGCCCCACCTCAGTGGCACAAGGTATGAACCAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCACAGCAGGTGGCCCCACCTCAGTGGCACAAGGTATGAACCAGCC  400

seq1  TGCTTTAGGCTGGGGGAGGTTACATTTCCCCCCTGTTCATATAATTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTAGGCTGGGGGAGGTTACATTTCCCCCCTGTTCATATAATTAAAA  450

seq1  TAGCTGGACAGAGGCATCAAATTTTATTTTTGCTCCATAACTCCTGCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGACAGAGGCATCAAATTTTATTTTTGCTCCATAACTCCTGCCTG  500

seq1  GGAGTTATGGTGGCTGGCGGCTGCACCTGACTTAGGAAATCTTAGATCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTATGGTGGCTGGCGGCTGCACCTGACTTAGGAAATCTTAGATCTT  550

seq1  CCTGAACCATTCAATCCCGTCATAGAGGGTATGTGCAGCTTGTTTGTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACCATTCAATCCCGTCATAGAGGGTATGTGCAGCTTGTTTGTGTT  600

seq1  TATTTTACACAAAACATGGCTCTGTGGTGTATTATTAGCAACCACGGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTACACAAAACATGGCTCTGTGGTGTATTATTAGCAACCACGGTCT  650

seq1  CTTGGCATGGACCTCTGTCTTAGATTGATATGATCCCGAGATCTGGGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCATGGACCTCTGTCTTAGATTGATATGATCCCGAGATCTGGGTGC  700

seq1  CCGTCTTTAGCTGT-CCGGACCTCAGAGCACACCTTATTCCCAATTCAGA  749
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCGTCTTTAGCTGTCCCGGACCTCAGAGCACACCTTATTCCCAATTCAGA  750

seq1  CCAAAGCCACAATATATACTTAAAATGCTTCTTCATATAGATTAATAACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCCACAATATATACTTAAAATGCTTCTTCATATAGATTAATAACT  800

seq1  GCCACCTGTGCTGTTGGAGGCGAGGCTGCAGACTTGCTGCAATCAGGCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCTGTGCTGTTGGAGGCGAGGCTGCAGACTTGCTGCAATCAGGCTG  850

seq1  AAGGGTGTGGCTGACCTTAAGAGGTCTTGTCCAGGCAATCCAGAACAATT  899
      || ||||| ||||||||| ||||||||||| |||||||||||| ||||||
seq2  AA-GGTGT-GCTGACCTT-AGAGGTCTTGT-CAGGCAATCCAG-ACAATT  895

seq1  TATTAAATGTCCAAAAACAGTCTTCTTAAAAGAACAGCA-TTTTTTCTTA  948
      || ||||||||| ||||||||| |||||||||||||||| ||||||||||
seq2  TA-TAAATGTCC-AAAACAGTC-TCTTAAAAGAACAGCATTTTTTTCTTA  942

seq1  TGAGTAGCATAAGCAATTGCAAACTTGAGAATTAATAGCATCTGTTGCTC  998
      |||||||||||||| ||||||||| |||||||||||||||||||||||  
seq2  TGAGTAGCATAAGC-ATTGCAAAC-TGAGAATTAATAGCATCTGTTGCCT  990

seq1  CAGTGCCC-GATAT-GATCCTTTTCTTTTTCTTTCCTTCCCGTGGAACTC  1046
      || ||||| ||||| |||||||||| |||||||||| ||||| |   | |
seq2  CA-TGCCCGGATATGGATCCTTTTC-TTTTCTTTCCCTCCCG-GACTCCC  1037

seq1  CACACCAAGCAGTGTTCCTTCAGCATTTTTCTGCCATTCCTTAGGTCCCT  1096
      |||||||||||  |||||||| ||| ||||||||   || ||| || |||
seq2  CACACCAAGCAAGGTTCCTTC-GCA-TTTTCTGC--ATCTTTAAGT-CCT  1082

seq1  GTCTCGGGGCACCAAACTGTTGTGAGCCGACCTGTAGCT-CACAAGAAAC  1145
      || |||    ||  |||   ||||  |||||||| |||| ||||||||||
seq2  GTTTCG----AC--AAC---TGTGGACCGACCTG-AGCTCCACAAGAAAC  1122

seq1  AGGGGTTCTTT  1156
      |||||||||||
seq2  AGGGGTTCTTT  1133