BAC Information

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BAC

Clone NameB6Ng01-129N05
Chromosome5 (Build37)
Map Location 49,111,452 - 49,266,738
singlet/doubletdoublet
Overlap geneKcnip4
Upstream geneLOC100040876, Slit2, 4933428G09Rik
Downstream geneLOC100041668, LOC100041659, EG433885
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129N05.bB6Ng01-129N05.g
ACCDH931308DH931309
length1,062954
definitionDH931308|Mus musculus domesticus DNA, BAC clone: B6Ng01-129N05, 5' end.DH931309|Mus musculus domesticus DNA, BAC clone: B6Ng01-129N05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,265,672 - 49,266,738)(49,111,452 - 49,112,405)
sequence
gaattctcaatgattcccatacatttttttttctttccttccaattttct
ttataaaacttagctatagagaccattcaggtaactcttttcctttatat
tactgcatttttttttttactaataatagcatagacgtttagactgccat
agattccaattaagagaattcaaggtacagagaaacatttcctactttag
cctttatagcaattcgaaagtcaacctatataataagatatgttctatat
tttcaaagaacttggtccccaaataatttccctcaactgtcattcacgaa
gaaactaggccttaagatttgttttgcattttcatctggactcagtcagt
aggtaattgatgttagcaaatgagtataaggataacccattggatcatgg
taaagtataaggagaaatgccatctacatcacatgtagtcacaagcaaag
agcaaccaggccatgattcctctgcattgaccagagttgtactaccagga
gtcaggagtactctttctggatgggtcattaaaataaagtattacagttt
aagtatgtccagtctaagcaaatacctattcatggctaagctgcagaata
aaacctagttacaggttttatttcaaaacctgcaactgctagcttctggt
gctcaaccatctatgttgccaatacaacacagtcatttttcttgaggaag
aaagaatgcttaatttaaactttctgcactagtaggtagtgagtatgggc
tataagagattttcaagtgagataaatgtccacagactaatactactttg
atattagtaacccaaattatatagtatttttcttctaaattttttaatag
ttttagctagaagcttttggactttccaataataaaggcatgaatggagc
agatgttgagagtgtcacagaaggaaagaaagactaggtgtccttgtaac
tcttttcataggttactgaaattcactgaattagttgaaatcagtctgat
tgcttgggatactcctgattcttgtgttgtatggaatagaattgtttcat
ggagtcagtcat
gaattcaccacttgcatatgtagacatttagcattaggaaacttaaggag
gctttccagagtgacacagcttagaagtagtgacatgaatcagtcagcat
ctttgattctgatttcagcactcaaacgtttggcattacaaagaccttct
acttaaaaccatcaaaccaaaacaaattctataaccttatgatttatact
cttatagtcttctaaccgtatgaagttacattatatataaaacagtaaag
agaaaacaaaagcttgatgtccagctgctgttttatctcctttggtttag
tctaaattggcaccagttacaccatatctaacctcgctctatatcttttt
gtcctgtccaacatgatggctccacagaggtctgtaggatctgcatttgc
agctttagcttctcttctcccctccttactcagcatatgatcttccagac
cataactatatttaatacagctcagtataaatttaatgtgtttgcaatca
gagtaaattgccaatattttgtgcttatagataacaattagtttctgata
ggtttcatagtttatgttaaaaaaggaaaattcaaaaaattacctccaga
ttaaagtacttttgttcattaaataaaataatttcatatataacacaata
ttcccacaaattatcaataaattttatattggtttaagcaacctcaaaat
aataaaaaggaggatcaaatataaatacatagttcaacaatacttattaa
aatgttgatcaattcagctttaggaggaatttaatcataaagctagacca
agcaaagcttaaacacctaatccaaagatttctgtgctccactgaaaaac
agatcaataatagtaattggattttaacgtttgggaataaatagatatca
gaaagtaaagaacttgctgatgctattttgaatgctgctatgagtgcgat
attt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_49265672_49266738
seq2: B6Ng01-129N05.b_50_1111 (reverse)

seq1  ATGACTGACTCCCTGAAACATTTCTATTTCCATACAACACAAGAATCAGG  50
      |||||||||||| ||||||| ||||| |||||||||||||||||||||||
seq2  ATGACTGACTCCATGAAACAATTCTA-TTCCATACAACACAAGAATCAGG  49

seq1  AGTATCCCCAGCATTCCGGACTGATTTCAACCTAATTCAGTGAATTTCAG  100
      |||||||| |||| | | |||||||||||| |||||||||||||||||||
seq2  AGTATCCCAAGCAAT-CAGACTGATTTCAA-CTAATTCAGTGAATTTCAG  97

seq1  TAACCTATGAAAAGAGTTACAAGGACACCTAGTCTTTTCTTTTCCTTCTG  150
      |||||||||||||||||||||||||||||||||||||   ||||||||||
seq2  TAACCTATGAAAAGAGTTACAAGGACACCTAGTCTTT--CTTTCCTTCTG  145

seq1  TGACACTCTCACCTTCTGCTCCATTCATGCCTTTATTATTGGAAAGTCCA  200
      ||||||||||| | ||||||||||||||||||||||||||||||||||||
seq2  TGACACTCTCAACATCTGCTCCATTCATGCCTTTATTATTGGAAAGTCCA  195

seq1  AAAGCTTCTAGCTAAAACTATTAAAAAATTTAGAAGAAAAATACTATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTCTAGCTAAAACTATTAAAAAATTTAGAAGAAAAATACTATATA  245

seq1  ATTTGGGTTACTAATATCAAAGTAGTATTAGTCTGTGGACATTTATCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGTTACTAATATCAAAGTAGTATTAGTCTGTGGACATTTATCTCA  295

seq1  CTTGAAAATCTCTTATAGCCCATACTCACTACCTACTAGTGCAGAAAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAATCTCTTATAGCCCATACTCACTACCTACTAGTGCAGAAAGTT  345

seq1  TAAATTAAGCATTCTTTCTTCCTCAAGAAAAATGACTGTGTTGTATTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAAGCATTCTTTCTTCCTCAAGAAAAATGACTGTGTTGTATTGGC  395

seq1  AACATAGATGGTTGAGCACCAGAAGCTAGCAGTTGCAGGTTTTGAAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAGATGGTTGAGCACCAGAAGCTAGCAGTTGCAGGTTTTGAAATAA  445

seq1  AACCTGTAACTAGGTTTTATTCTGCAGCTTAGCCATGAATAGGTATTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGTAACTAGGTTTTATTCTGCAGCTTAGCCATGAATAGGTATTTGC  495

seq1  TTAGACTGGACATACTTAAACTGTAATACTTTATTTTAATGACCCATCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACTGGACATACTTAAACTGTAATACTTTATTTTAATGACCCATCCA  545

seq1  GAAAGAGTACTCCTGACTCCTGGTAGTACAACTCTGGTCAATGCAGAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGTACTCCTGACTCCTGGTAGTACAACTCTGGTCAATGCAGAGGA  595

seq1  ATCATGGCCTGGTTGCTCTTTGCTTGTGACTACATGTGATGTAGATGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGCCTGGTTGCTCTTTGCTTGTGACTACATGTGATGTAGATGGCA  645

seq1  TTTCTCCTTATACTTTACCATGATCCAATGGGTTATCCTTATACTCATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTTATACTTTACCATGATCCAATGGGTTATCCTTATACTCATTT  695

seq1  GCTAACATCAATTACCTACTGACTGAGTCCAGATGAAAATGCAAAACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACATCAATTACCTACTGACTGAGTCCAGATGAAAATGCAAAACAAA  745

seq1  TCTTAAGGCCTAGTTTCTTCGTGAATGACAGTTGAGGGAAATTATTTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGGCCTAGTTTCTTCGTGAATGACAGTTGAGGGAAATTATTTGGG  795

seq1  GACCAAGTTCTTTGAAAATATAGAACATATCTTATTATATAGGTTGACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGTTCTTTGAAAATATAGAACATATCTTATTATATAGGTTGACTT  845

seq1  TCGAATTGCTATAAAGGCTAAAGTAGGAAATGTTTCTCTGTACCTTGAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAATTGCTATAAAGGCTAAAGTAGGAAATGTTTCTCTGTACCTTGAAT  895

seq1  TCTCTTAATTGGAATCTATGGCAGTCTAAACGTCTATGCTATTATTAGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTAATTGGAATCTATGGCAGTCTAAACGTCTATGCTATTATTAGTA  945

seq1  AAAAAAAAAATGCAGTAATATAAAGGAAAAGAGTTACCTGAATGGTCTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAATGCAGTAATATAAAGGAAAAGAGTTACCTGAATGGTCTCT  995

seq1  ATAGCTAAGTTTTATAAAGAAAATTGGAAGGAAAGAAAAAAAAATGTATG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTAAGTTTTATAAAGAAAATTGGAAGGAAAGAAAAAAAAATGTATG  1045

seq1  GGAATCATTGAGAATTC  1067
      |||||||||||||||||
seq2  GGAATCATTGAGAATTC  1062

seq1: chr5_49111452_49112405
seq2: B6Ng01-129N05.g_69_1014

seq1  GAATTCACCACTTGCATATGTAGACATTTAGCATTAGGAAACTTAAGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCACTTGCATATGTAGACATTTAGCATTAGGAAACTTAAGGAG  50

seq1  GCTTTCCAGAGTGACACAGCTTAGAAGTAGTGACATGAATCAGTCAGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCAGAGTGACACAGCTTAGAAGTAGTGACATGAATCAGTCAGCAT  100

seq1  CTTTGATTCTGATTTCAGCACTCAAACGTTTGGCATTACAAAGACCTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATTCTGATTTCAGCACTCAAACGTTTGGCATTACAAAGACCTTCT  150

seq1  ACTTAAAACCATCAAACCAAAACAAATTCTATAACCTTATGATTTATACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAACCATCAAACCAAAACAAATTCTATAACCTTATGATTTATACT  200

seq1  CTTATAGTCTTCTAACCGTATGAAGTTACATTATATATAAAACAGTAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAGTCTTCTAACCGTATGAAGTTACATTATATATAAAACAGTAAAG  250

seq1  AGAAAACAAAAGCTTGATGTCCAGCTGCTGTTTTATCTCCTTTGGTTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACAAAAGCTTGATGTCCAGCTGCTGTTTTATCTCCTTTGGTTTAG  300

seq1  TCTAAATTGGCACCAGTTACACCATATCTAACCTCGCTCTATATCTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATTGGCACCAGTTACACCATATCTAACCTCGCTCTATATCTTTTT  350

seq1  GTCCTGTCCAACATGATGGCTCCACAGAGGTCTGTAGGATCTGCATTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTCCAACATGATGGCTCCACAGAGGTCTGTAGGATCTGCATTTGC  400

seq1  AGCTTTAGCTTCTCTTCTCCCCTCCTTACTCAGCATATGATCTTCCAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTAGCTTCTCTTCTCCCCTCCTTACTCAGCATATGATCTTCCAGAC  450

seq1  CATAACTATATTTAATACAGCTCAGTATAAATTTAATGTGTTTGCAATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACTATATTTAATACAGCTCAGTATAAATTTAATGTGTTTGCAATCA  500

seq1  GAGTAAATTGCCAATATTTTGTGCTTATAGATAACAATTAGTTTCTGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAATTGCCAATATTTTGTGCTTATAGATAACAATTAGTTTCTGATA  550

seq1  GGTTTCATAGTTTATGTTAAAAAAGGAAAATTCAAAAAATTACCTCCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCATAGTTTATGTTAAAAAAGGAAAATTCAAAAAATTACCTCCAGA  600

seq1  TTAAAGTACTTTTGTTCATTAAATAAAATAATTTCATATATAACACAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTACTTTTGTTCATTAAATAAAATAATTTCATATATAACACAATA  650

seq1  TTCCCACAAATTATCAATAAATTTTATATTGGTTTAAGCAACCTCAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACAAATTATCAATAAATTTTATATTGGTTTAAGCAACCTCAAAAT  700

seq1  AATAAAAAGGAGGATCAAATATAAATACATAGTTCAACAATACTTATTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAGGAGGATCAAATATAAATACATAGTTCAACAATACTTATTAA  750

seq1  AATGTTGATCAATTCAGCTTTAGGAGGAATTTAATCATAAAGCTAGACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGATCAATTCAGCTTTAGGAGGAATTTAATCATAAAGCTAGACCA  800

seq1  AGCAAAGCTTAAACACCTAATCCAAAAGATTTCTGTGCTCCACTGAAAAA  850
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGCAAAGCTTAAACACCTAATCC-AAAGATTTCTGTGCTCCACTGAAAAA  849

seq1  CAGATCAATAATAGTAAATTGGATTTTTAACGTTTGGGAATAAATAGGAT  900
      ||||||||||||||| ||||||| |||||||||||||||||||||| |||
seq2  CAGATCAATAATAGT-AATTGGA-TTTTAACGTTTGGGAATAAATA-GAT  896

seq1  ATCAGAAAGTAAAGAAACTTGCTGATGCTATTTTTGAGATGCTGCTAATG  950
      |||||||||||||| ||||||||||||||| |||||| |||||||| |||
seq2  ATCAGAAAGTAAAG-AACTTGCTGATGCTA-TTTTGA-ATGCTGCT-ATG  942

seq1  AGTG  954
      ||||
seq2  AGTG  946