BAC Information

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BAC

Clone NameB6Ng01-130G10
Chromosome5 (Build37)5 (Build37)
Map Location 18,084,517 - 18,084,97090,741,087 - 90,741,697
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130G10.bB6Ng01-130G10.g
ACCDH931725DH931726
length374610
definitionDH931725|Mus musculus domesticus DNA, BAC clone: B6Ng01-130G10, 5' end.DH931726|Mus musculus domesticus DNA, BAC clone: B6Ng01-130G10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,084,517 - 18,084,970)(90,741,087 - 90,741,697)
sequence
gaattctccactggggaagtgtaagggatgagtagaccgggaaaaatgtt
caacagccttagtcagaatggaaatgaagagcctacccacccggaaattc
cacctcacactatactaaatggctaagatcaaaaactcaggtgacattat
atgctggtcaggatgtggacaaggaggaacattcctccattgctgatggg
attgagagctggtacaaccactctgtaaatcatctttgtggttccttaca
aaattggacctcgcacctgcgcaagatcccggggtacccctcctgaccaa
ataccccgaagacttccaacttgtaataatgaaacaggctccactatgtt
cataacagccttattactaatagc
gaattcactttgtagaccaggctggccttgaactcgggagattcgcctgc
ctctgtgtaccaggtgaagggagtaaaggagtgcaacaccgctgctcagt
ttcagtagtgataatagtagtctattaaatcttccccaatgaaaaaccaa
agccgggcggggtggcgcacgcctttaatcccagcactcgggaagcagag
gcaggcggatttctgagttccaggatagccagggctacacagagaaaccc
tgtctcgaaaaaccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccaaac
aaaaacaaaaaacccaaaaagatattttaacaatggtaaaatccaaataa
atataaacactagttgttttatactcaaaacaaaaagacttgtcatttgg
tgatttgaagaagtaaatcaatctggaccaaatgtgaacatcagtaattt
aagctatttcttttctcaaaatatactctattaaccttgtagccaaatcc
aaagaataagaaagccgtatacattaattaaggggcattcacaactccac
tcagcaaacattgaccaccattattctatgtattcaaagcaataagttag
cttttagtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18084517_18084970
seq2: B6Ng01-130G10.b_263_416 (reverse)

seq1  GCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTT  50
      |||||||  |||||||||| ||||||||||||||||| ||| || || ||
seq2  GCTATTAGTAATAAGGCTGTTATGAACATAGTGGAGCCTGTTTCATTATT  50

seq1  ACCAGTTGGAAACACATAAGTGGATGCTCACAGTC-AGCTATTGGAT--G  97
      || ||||||        ||||     ||     ||  | |||| | |  |
seq2  ACAAGTTGG--------AAGT-----CT-----TCGGGGTATTTGGTCAG  82

seq1  GATCACAGGGTCCCCAATGGGGGAGCTAGAGAAAGTACCCAAGAAGCTAA  147
      ||     |||| |||     |||| || | | | || |            
seq2  GA----GGGGTACCC----CGGGATCTTGCGCAGGTGC------------  112

seq1  AGGGGTCTGCAACCCTATAGGTGGAACAAC-AATATGAACTAACCAGTAC  196
       | ||||  |||   | ||   ||||| || || ||||  ||   ||   
seq2  -GAGGTC--CAATTTTGTA--AGGAACCACAAAGATGATTTACAGAG---  154

seq1  CCCCCAGAGCTCATGTCTCTAGCTGCATATGTATCAAAAGATGGCCTAGT  246
                                                        
seq2  --------------------------------------------------  154

seq1  CGGCCATCATTGGGAAGAGAGGCCCCTTGTTCTTGCAAACTTTATATGCC  296
                                                        
seq2  --------------------------------------------------  154

seq1  TCAGTACAGGGGAACGCCAGAGCCAAGAAGTGGGAGTTGGTGGGCAGGGG  346
                                                        
seq2  --------------------------------------------------  154

seq1  AGTGGGGGGAGGGTATGGGGGACTTTTGGGGTAGCATTGGAAATGTAAAT  396
                                                        
seq2  --------------------------------------------------  154

seq1  GAAGAAAATACTTAAATAAAAAAAAACCACAAAGGAACCAATGTAAAAAT  446
                                                        
seq2  --------------------------------------------------  154

seq1  TTACAGAG  454
              
seq2  --------  154

seq1: chr5_90741087_90741697
seq2: B6Ng01-130G10.g_69_678

seq1  GAATTCACTCTGTAGACCAGGCTGGCCTTGAACTCGGGAGATTCGCCTGC  50
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTAGACCAGGCTGGCCTTGAACTCGGGAGATTCGCCTGC  50

seq1  CTCTGTGTACCAGGTGAAGGGAGTAAAGGAGTGCAACACCACTGCTCAGT  100
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTCTGTGTACCAGGTGAAGGGAGTAAAGGAGTGCAACACCGCTGCTCAGT  100

seq1  TTCAGTAGTGATAATAGTAGTCTATTAAATCTTCCCCAATGAAAAACCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTAGTGATAATAGTAGTCTATTAAATCTTCCCCAATGAAAAACCAA  150

seq1  AGCCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAAGCAGAG  200
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGGGCGGGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAAGCAGAG  200

seq1  GCAGGCGGATTTCTGAGTTCCAGGATAGCCAGGGCTACACAGAGAAACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCGGATTTCTGAGTTCCAGGATAGCCAGGGCTACACAGAGAAACCC  250

seq1  TGTCTCGAAAACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAC  300
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAC  300

seq1  AAAAACAAAAAACCCAAAAAGATATTTTAACAATGGTAAAATCCAAATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAAAACAAAAAACCCAAAAAGATATTTTAACAATGGTAAAATCCAAATAA  350

seq1  ATATTAACACTAGTAGTTTTATACTCAAAACAAAAAGACATGTCATATGG  400
      |||| ||||||||| |||||||||||||||||||||||| |||||| |||
seq2  ATATAAACACTAGTTGTTTTATACTCAAAACAAAAAGACTTGTCATTTGG  400

seq1  TGATTTGAAGTAGCAAAACAATCTGGACCAAATGTGAACATCAGTAATTT  450
      |||||||||| || ||| ||||||||||||||||||||||||||||||||
seq2  TGATTTGAAGAAGTAAATCAATCTGGACCAAATGTGAACATCAGTAATTT  450

seq1  AAGCTATTTCTTTTCTCAAAATATACTCTATTAACCTTGTAGCTAAATCC  500
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAGCTATTTCTTTTCTCAAAATATACTCTATTAACCTTGTAGCCAAATCC  500

seq1  AAAGAATAAGAAAGTAGTATACATTAATTAATGGGCATTCACAACTCCAC  550
      ||||||||||||||  ||||||||||||||| ||||||||||||||||||
seq2  AAAGAATAAGAAAGCCGTATACATTAATTAAGGGGCATTCACAACTCCAC  550

seq1  TCAGCAAACATTGGCCACCAATTATTCCTTGTATTCAAAGCAATAAGTTA  600
      ||||||||||||| ||||| |||||||  |||||||||||||||||||||
seq2  TCAGCAAACATTGACCACC-ATTATTCTATGTATTCAAAGCAATAAGTTA  599

seq1  GCTATTAGTAA  611
      ||| |||||||
seq2  GCTTTTAGTAA  610