BAC Information

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BAC

Clone NameB6Ng01-130H07
Chromosome5 (Build37)
Map Location 61,871,491 - 62,006,140
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041498, LOC666597, EG666610
Downstream geneLOC100041524, G6pd2, LOC100041543, Centd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130H07.bB6Ng01-130H07.g
ACCDH931763DH931764
length1,1651,148
definitionDH931763|Mus musculus domesticus DNA, BAC clone: B6Ng01-130H07, 5' end.DH931764|Mus musculus domesticus DNA, BAC clone: B6Ng01-130H07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,004,937 - 62,006,140)(61,871,491 - 61,872,653)
sequence
gaattcaggaagatgaaataggaaatagaataactaaatgtagtttcttg
tttctcaaatcaacaacagatatgggaagtgcctagaatgataggaaaat
taaatgaaaagcaaggaataatgagacctagggaatgttacagtagcttc
aatttgacttagattaagtatgatctcaatattattggaagtataaattt
gggtgacattgtgtttcagaatagcttcattaaaataataataattcatc
ctttgaataaaagtatatatagtttgacaacagaggcatctttattctga
ttttactaatagattggttatagaaactgaaagtaggaacccatttgaaa
aaaataatactttggaagttttttttttttcatatattagatatggctga
ctaaggacaaaaaataatcaaagataactatatatatttaccctgctgag
ctgtcagaataataatattgacagtgatggcttaaagctatcctagagaa
aataatgagcagggttatagacatgttaggttgaaatgtcagatgtatat
tcaggtcgaggtatgcagacagccaatcatggaagtgaaagaaaagaaag
tggacaggaattaacttcatgctttcagatttctacatagactttatcta
ggtttctctctgtctcattagcatgactatagaatctaactcttaatgtt
ccttcagaccttcatcatttgtcattgggaagatcagaatgtttgacttt
tactgcttgcctatattatttggatggtataactgatttgtatatttaac
ataaaaattattttattcagttgatcataaacaaaataaccaataaaata
taaatacaaaaaaactctatggccataaaaaatttctggattttacacat
gctgtgacttacacatatgtgcacacacatacatgcacatatgcacacaa
aataaataatgtaaaaaattgtcagatatatagcacataataccatttgt
agtttcccatttggtacagtgacagttccccaaaataagcacatgatccc
agagatgaaatactgtttatcagagtctgctcaacacactgatcatcagc
aggctgaatacatgggtgaatatattacctggatttcagctcacctctca
cttgatcagctacgc
gaattcattgagagttttgaaataacaagaattacaatttaaaaatacgt
gtcaatgtccaccatgtcatttatgacttaaagactgcatctctgaaact
gtgatagaaaggatgttcattttttatagggagagatgtgttataattgt
tgctacaaataaagcaatcaagaaatacttaatgctgaaataaaataaat
cttcttctctgtgaatattgctatgtctttttgtgaatttgtttttaatc
atatcccaacatttaattaaatattttgcctacagagtgaatgacataat
tgttccccttaaagccagaatctttcatggtagtcttttaaattgcctat
ttcttgagtcataacttacagctacagaaagctctaagctctaagtggga
caaagtaatttaatattctaatctaccatattttccacaatgttactgag
agtttgttcagttctcttcagtttgtgcagtttgtgaactacaggtcatc
agaggcagttgtagccatagaataagaaaggaggatcccgaagattaaaa
cacatagccagagttaatttgaggccaaacaagttaattcagtagaaggc
tgagagatcccagattgaatcagtcaccttgtagaggagtttgagccaga
acagatgagttgaaccagccagccagagttcagaaaaaaaaaaagctgga
aaaggtgagcttatttagcagtaagcccttgagaggacaattgcatcaag
tgtataaaagttacatttacaattactactttcttactccgtatgttatg
ctagctaatttgttttaatatcaagcattgatgggttcacatttcttata
atatagtctatatatagtgctttctcttctagtcttatggaaaactattg
ttcttttttgcaacctactaggatatattttaccacgttcaaggaataat
gtatcccatttgctgcatgtttgtctgttgaatatggaaatgagaaattt
tgatttctagtattagtaatgcatttaacattcagttgatttgacagtgt
taattgaggagacattgaatgtactgacaagagaaatcaggacaagagca
gcttgaaccagcacatgtttgaatttttgtacttgatcacctagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_62004937_62006140
seq2: B6Ng01-130H07.b_45_1209 (reverse)

seq1  GCGTAGCTTTGGAATCAAGATGAGAGGTGAGCTGAAAAATGTCAGGTGAT  50
      ||||||||     |||||| |||||||||||||||||     ||||| ||
seq2  GCGTAGCT----GATCAAG-TGAGAGGTGAGCTGAAA---TCCAGGTAAT  42

seq1  AATAATCAACCCCATGTAATCAGCCCTTGCTGATGATCAGTGTGTGTGGA  100
       ||| |||  |||||||| ||||||  |||||||||||||||||| ||  
seq2  -ATATTCA--CCCATGTATTCAGCC--TGCTGATGATCAGTGTGT-TG--  84

seq1  AGGCAAGACTCTGGAATAAACAGTTATTTCATCTCTGGGAATCAATGTGC  150
      ||   ||||||||  |||||||| ||||||||||||||| ||| ||||||
seq2  AG--CAGACTCTG--ATAAACAG-TATTTCATCTCTGGG-ATC-ATGTGC  127

seq1  TTTATTTTGGGGGAACTTGTCACTGGTTAACCAAAATGGGAAAACTTAAC  200
       ||||||| ||||||| ||||||||  ||  | ||||||| |||||  ||
seq2  -TTATTTT-GGGGAAC-TGTCACTG--TA--CCAAATGGG-AAACT--AC  167

seq1  AAAATGGTATTATTGTGCTAATATTATCTGAACAATTTTTTTACATTATT  250
       ||||||||||| |||||| ||| |||||| |||| ||||||||||||||
seq2  -AAATGGTATTA-TGTGCT-ATA-TATCTG-ACAA-TTTTTTACATTATT  211

seq1  TATTTTGTGTGCATATGTGCATGTATGTGTGTGCACATATGTGTAAGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTGTGCATATGTGCATGTATGTGTGTGCACATATGTGTAAGTCA  261

seq1  CAGCATGTGTAAAATCCAGAAATTTTTTATGGCCATAGAGTTTTTTTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGTGTAAAATCCAGAAATTTTTTATGGCCATAGAGTTTTTTTGTA  311

seq1  TTTATATTTTATTGGTTATTTTGTTTATGATCAACTGAATAAAATAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTTTATTGGTTATTTTGTTTATGATCAACTGAATAAAATAATTT  361

seq1  TTATGTTAAATATACAAATCAGTTATACCATCCAAATAATATAGGCAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTAAATATACAAATCAGTTATACCATCCAAATAATATAGGCAAGC  411

seq1  AGTAAAAGTCAAACATTCTGATCTTCCCAATGACAAATGATGAAGGTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAGTCAAACATTCTGATCTTCCCAATGACAAATGATGAAGGTCTG  461

seq1  AAGGAACATTAAGAGTTAGATTCTATAGTCATGCTAATGAGACAGAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACATTAAGAGTTAGATTCTATAGTCATGCTAATGAGACAGAGAGA  511

seq1  AACCTAGATAAAGTCTATGTAGAAATCTGAAAGCATGAAGTTAATTCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAGATAAAGTCTATGTAGAAATCTGAAAGCATGAAGTTAATTCCTG  561

seq1  TCCACTTTCTTTTCTTTCACTTCCATGATTGGCTGTCTGCATACCTCGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTTCTTTTCTTTCACTTCCATGATTGGCTGTCTGCATACCTCGAC  611

seq1  CTGAATATACATCTGACATTTCAACCTAACATGTCTATAACCCTGCTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATATACATCTGACATTTCAACCTAACATGTCTATAACCCTGCTCAT  661

seq1  TATTTTCTCTAGGATAGCTTTAAGCCATCACTGTCAATATTATTATTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTCTAGGATAGCTTTAAGCCATCACTGTCAATATTATTATTCTG  711

seq1  ACAGCTCAGCAGGGTAAATATATATAGTTATCTTTGATTATTTTTTGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCAGCAGGGTAAATATATATAGTTATCTTTGATTATTTTTTGTCC  761

seq1  TTAGTCAGCCATATCTAATATATGAAAAAAAAAAAACTTCCAAAGTATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCAGCCATATCTAATATATGAAAAAAAAAAAACTTCCAAAGTATTA  811

seq1  TTTTTTTCAAATGGGTTCCTACTTTCAGTTTCTATAACCAATCTATTAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCAAATGGGTTCCTACTTTCAGTTTCTATAACCAATCTATTAGT  861

seq1  AAAATCAGAATAAAGATGCCTCTGTTGTCAAACTATATATACTTTTATTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAGAATAAAGATGCCTCTGTTGTCAAACTATATATACTTTTATTC  911

seq1  AAAGGATGAATTATTATTATTTTAATGAAGCTATTCTGAAACACAATGTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATGAATTATTATTATTTTAATGAAGCTATTCTGAAACACAATGTC  961

seq1  ACCCAAATTTATACTTCCAATAATATTGAGATCATACTTAATCTAAGTCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAATTTATACTTCCAATAATATTGAGATCATACTTAATCTAAGTCA  1011

seq1  AATTGAAGCTACTGTAACATTCCCTAGGTCTCATTATTCCTTGCTTTTCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAGCTACTGTAACATTCCCTAGGTCTCATTATTCCTTGCTTTTCA  1061

seq1  TTTAATTTTCCTATCATTCTAGGCACTTCCCATATCTGTTGTTGATTTGA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTTCCTATCATTCTAGGCACTTCCCATATCTGTTGTTGATTTGA  1111

seq1  GAAACAAGAAACTACATTTAGTTATTCTATTTCCTATTTCATCTTCCTGA  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAGAAACTACATTTAGTTATTCTATTTCCTATTTCATCTTCCTGA  1161

seq1  ATTC  1204
      ||||
seq2  ATTC  1165

seq1: chr5_61871491_61872653
seq2: B6Ng01-130H07.g_69_1216

seq1  GAATTCATTGAGAGTTTTGAAATAACAAGAATTACAATTTAAAAATACGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGAGAGTTTTGAAATAACAAGAATTACAATTTAAAAATACGT  50

seq1  GTCAATGTCCACCATGTCATTTATGACTTAAAGACTGCATCTCTGAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATGTCCACCATGTCATTTATGACTTAAAGACTGCATCTCTGAAACT  100

seq1  GTGATAGAAAGGATGTTCATTTTTTATAGGGAGAGATGTGTTATAATTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAGAAAGGATGTTCATTTTTTATAGGGAGAGATGTGTTATAATTGT  150

seq1  TGCTACAAATAAAGCAATCAAGAAATACTTAATGCTGAAATAAAATAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACAAATAAAGCAATCAAGAAATACTTAATGCTGAAATAAAATAAAT  200

seq1  CTTCTTCTCTGTGAATATTGCTATGTCTTTTTGTGAATTTGTTTTTAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTCTGTGAATATTGCTATGTCTTTTTGTGAATTTGTTTTTAATC  250

seq1  ATATCCCAACATTTAATTAAATATTTTGCCTACAGAGTGAATGACATAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCCAACATTTAATTAAATATTTTGCCTACAGAGTGAATGACATAAT  300

seq1  TGTTCCCCTTAAAGCCAGAATCTTTCATGGTAGTCTTTTAAATTGCCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCCTTAAAGCCAGAATCTTTCATGGTAGTCTTTTAAATTGCCTAT  350

seq1  TTCTTGAGTCATAACTTACAGCTACAGAAAGCTCTAAGCTCTAAGTGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAGTCATAACTTACAGCTACAGAAAGCTCTAAGCTCTAAGTGGGA  400

seq1  CAAAGTAATTTAATATTCTAATCTACCATATTTTCCACAATGTTACTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTAATTTAATATTCTAATCTACCATATTTTCCACAATGTTACTGAG  450

seq1  AGTTTGTTCAGTTCTCTTCAGTTTGTGCAGTTTGTGAACTACAGGTCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTTCAGTTCTCTTCAGTTTGTGCAGTTTGTGAACTACAGGTCATC  500

seq1  AGAGGCAGTTGTAGCCATAGAATAAGAAAGGAGGATCCCGAAGATTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGTTGTAGCCATAGAATAAGAAAGGAGGATCCCGAAGATTAAAA  550

seq1  CACATAGCCAGAGTTAATTTGAGGCCAAACAAGTTAATTCAGTAGAAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGCCAGAGTTAATTTGAGGCCAAACAAGTTAATTCAGTAGAAGGC  600

seq1  TGAGAGATCCCAGATTGAATCAGTCACCTTGTAGAGGAGTTTGAGCCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGATCCCAGATTGAATCAGTCACCTTGTAGAGGAGTTTGAGCCAGA  650

seq1  ACAGATGAGTTGAACCAGCCAGCCAGAGTTCAGAAAAAAAAAAAGCTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGAGTTGAACCAGCCAGCCAGAGTTCAGAAAAAAAAAAAGCTGGA  700

seq1  AAAGGTGAGCTTATTTAGCAGTAAGCCCTTGAGAGGACAATTGCATCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGAGCTTATTTAGCAGTAAGCCCTTGAGAGGACAATTGCATCAAG  750

seq1  TGTATAAAAGTTACATTTACAATTACTACTTTCTTACTCCGTATGTTATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAAAAGTTACATTTACAATTACTACTTTCTTACTCCGTATGTTATG  800

seq1  CTAGCTAATTTGTTTTAATATCAAGCATTGAT-GGTTCACATTTCTTATA  849
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTAGCTAATTTGTTTTAATATCAAGCATTGATGGGTTCACATTTCTTATA  850

seq1  ATATAGTCTATATATAGTGCTTTCTCTTCTAGTCTTATGGAAAACTAATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATATAGTCTATATATAGTGCTTTCTCTTCTAGTCTTATGGAAAACTATTG  900

seq1  TTC-TTTGTGCAACCTACTAGGATATATTTTACCACGTTCAAGGAATAAT  948
      ||| ||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTTGCAACCTACTAGGATATATTTTACCACGTTCAAGGAATAAT  950

seq1  GTATCACATTTTGCTGCATGTTTGTTCTGTTG-ATATGGAAAATGAGAAA  997
      ||||| || ||||||||||||||| ||||||| |||||| ||||||| ||
seq2  GTATCCCA-TTTGCTGCATGTTTG-TCTGTTGAATATGG-AAATGAG-AA  996

seq1  ATTTTGATTTTCTAGTATTTAGTAATGCATTTAACATCCAGTTGATTTTG  1047
      ||||||| ||||||||| ||||||||||||||||||| ||||||| ||||
seq2  ATTTTGA-TTTCTAGTA-TTAGTAATGCATTTAACATTCAGTTGA-TTTG  1043

seq1  ACAAGTGTTAAATGAAGGAAGACATTGAATGTACTGACAAAGAGAAAAAT  1097
      || |||||||| |||  | ||||||||||||||||||||   ||| ||||
seq2  AC-AGTGTTAATTGA--GGAGACATTGAATGTACTGACA---AGAGAAAT  1087

seq1  CAGGACAAGAAAGCAGTCTTGGAACCAGCACATGTTTGAATATTTTGTAC  1147
      |||||||||  ||||| ||| |||||||||||||||||||| ||||||||
seq2  CAGGACAAG--AGCAG-CTT-GAACCAGCACATGTTTGAAT-TTTTGTAC  1132

seq1  -TGATCAACTAAGGGGA  1163
       |||||| || ||||||
seq2  TTGATCACCT-AGGGGA  1148