BAC Information

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BAC

Clone NameB6Ng01-130H17
Chromosome5 (Build37)
Map Location 58,096,056 - 58,226,511
singlet/doubletdoublet
Overlap genePcdh7
Upstream geneLOC100041335, LOC100041349, LOC666455, LOC625721, EG666465
Downstream geneLOC100041385
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130H17.bB6Ng01-130H17.g
ACCDH931783DH931784
length1,013777
definitionDH931783|Mus musculus domesticus DNA, BAC clone: B6Ng01-130H17, 5' end.DH931784|Mus musculus domesticus DNA, BAC clone: B6Ng01-130H17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,096,056 - 58,097,067)(58,225,743 - 58,226,511)
sequence
gaattccagtgatctgatacattctgaattttctttaggccacttttctt
tataattgccttcacagtcacttttactaactacaaaagactcaaaataa
aataagatctttgaacttattatttgaataaatgtaatattctccagctc
tgtcagacatttaattcacattaagaggttctgaatgccatttgaccatt
tcaagggatgaaagaaatagttacaaaaatatctcaagtacgctcatgag
ggaatccagtgatgctcacagaaattgcagtatcataggaataattgtac
agccttttaaaatgacaaatgtgaagatggttatacttattagacagtcg
gctctaattgaccagttttcataatgtcttcagtaattttatatcatagc
catactctacatgaataggattcttcataagataaaccataaatattttc
ataacaaatgaattaaatttgtaatttatgtgttattatgcccaatactg
attgtagtaagatcaagggaataagacagcaagggatgcaaagttgtttg
tgtaaggtggatctggaaagagttggaagaaataacaaacaagagcaact
gcattgtatgaaatcatcaaaacactaataaaaatatttctaaaacacaa
taggagatgcagggatgacttatctcacgatgtctacttccagattcatt
tgcttactgttgctatctagagatgcaataggtaaataagttagattcaa
gatagagtttatgcttgaaatttactagtcatcagtcatgtggccaatcc
taaagattgccacaattgccatgaaaataaattactaagaaaacaatcca
ttgagaattagatacatattttcattcttcttttgaacagttgctgaacg
aggttgtgtataaattaatatacgagaaactaattcttgactgttgaaaa
gttgaaagtatatggttagtaattgagatgggagggggcctgttgaagga
aatgacttttctt
gaattcttgagaaggtaggaagacaagcaagtgtggcacatggcttggat
cctaacactcagaaggaagatctctgagttcaagacaaacctggcctaca
gatttccaagactgccaggcttttgttactcaaagaaacctgaatcaaag
aaaccaaggaaggccaggggagaggggggaagagaggagagagaggagag
aagacagacagacagacaggcttagagttagagagggagggcaggctctt
actttctatctcaagctggcttggagctcactaggtaacaccaactagcc
tcaagtgtcagaatgatcacaagtgagtacacactgaccaatcactgttg
accttaaacatggaagaaggctgtgagacaaaaactgcagctaacctcat
gcaggtaaaaaagtatgaggatgtggatctttcttcagaaaccacagtta
agaacacaaactgacacttggatttcaacccattgagccacattcccatc
ctcagaccttcagaaaagcaaaacaataaatgactgcgttttagaagtaa
tttataaccctcctttggcctagcaataggtagcttatacaatatacatt
ttatgtgtatgcaaatacgtttgcataagcatgttccagacaaaactttt
ggagtatttaccatcccttttatcttgctctggtgagttcattcaaagaa
tgctgactattactgctttgaaccaatcgtctttacttcattatgacttt
gagatatatctctggttgaaaagatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_58096056_58097067
seq2: B6Ng01-130H17.b_43_1055

seq1  GAATTCCAGTGATCTGATACATTCTGAATTTTCTTTAGGCCACTTTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGATCTGATACATTCTGAATTTTCTTTAGGCCACTTTTCTT  50

seq1  TATAATTGCCTTCACAGTCACTTTTACTAACTACAAAAGACTCAAAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTGCCTTCACAGTCACTTTTACTAACTACAAAAGACTCAAAATAA  100

seq1  AATAAGATCTTTGAACTTATTATTTGAATAAATGTAATATTCTCCAGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGATCTTTGAACTTATTATTTGAATAAATGTAATATTCTCCAGCTC  150

seq1  TGTCAGACATTTAATTCACATTAAGAGGTTCTGAATGCCATTTGACCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGACATTTAATTCACATTAAGAGGTTCTGAATGCCATTTGACCATT  200

seq1  TCAAGGGATGAAAGAAATAGTTACAAAAATATCTCAAGTACGCTCATGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGGATGAAAGAAATAGTTACAAAAATATCTCAAGTACGCTCATGAG  250

seq1  GGAATCCAGTGATGCTCACAGAAATTGCAGTATCATAGGAATAATTGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCCAGTGATGCTCACAGAAATTGCAGTATCATAGGAATAATTGTAC  300

seq1  AGCCTTTTAAAATGACAAATGTGAAGATGGTTATACTTATTAGACAGTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTTAAAATGACAAATGTGAAGATGGTTATACTTATTAGACAGTCG  350

seq1  GCTCTAATTGACCAGTTTTCATAATGTCTTCAGTAATTTTATATCATAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAATTGACCAGTTTTCATAATGTCTTCAGTAATTTTATATCATAGC  400

seq1  CATACTCTACATGAATAGGATTCTTCATAAGATAAACCATAAATATTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTCTACATGAATAGGATTCTTCATAAGATAAACCATAAATATTTTC  450

seq1  ATAACAAATGAATTAAATTTGTAATTTATGTGTTATTATGCCCAATACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAATGAATTAAATTTGTAATTTATGTGTTATTATGCCCAATACTG  500

seq1  ATTGTAGTAAGATCAAGGGAATAAGACAGCAAGGGATGCAAAGTTGTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAGTAAGATCAAGGGAATAAGACAGCAAGGGATGCAAAGTTGTTTG  550

seq1  TGTAAGGTGGATCTGGAAAGAGTTGGAAGAAATAACAAACAAGAGCAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGGTGGATCTGGAAAGAGTTGGAAGAAATAACAAACAAGAGCAACT  600

seq1  GCATTGTATGAAATCATCAAAACACTAATAAAAATATTTCTAAAACACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGTATGAAATCATCAAAACACTAATAAAAATATTTCTAAAACACAA  650

seq1  TAGGAGATGCAGGGATGACTTATCTCACGATGTCTACTTCCAGATTCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGATGCAGGGATGACTTATCTCACGATGTCTACTTCCAGATTCATT  700

seq1  TGCTTACTGTTGCTATCTAGAGATGCAATAGGTAAATAAGTTAGATTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACTGTTGCTATCTAGAGATGCAATAGGTAAATAAGTTAGATTCAA  750

seq1  GATAGAGTTTATGCTTGAAATTTACTAGTCATCAGTCATGTGGCCAATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGTTTATGCTTGAAATTTACTAGTCATCAGTCATGTGGCCAATCC  800

seq1  TAAAGATTGCCACAATTGCCATGAAAATAAATTACTAAGAAAACAATCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATTGCCACAATTGCCATGAAAATAAATTACTAAGAAAACAATCCA  850

seq1  TTGAGAATTAGATACATATTTTCATTCTTCTTTTGAACAGTTGCTGAACG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAATTAGATACATATTTTCATTCTTCTTTTGAACAGTTGCTGAACG  900

seq1  AGGTTGTGTATAAATTAATATACGAGAAACTAATTCTTGACTGTTGAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTGTATAAATTAATATACGAGAAACTAATTCTTGACTGTTGAAAA  950

seq1  GTTGAAAGTATATGGTTAGTTAATTGAGATGGGAGGGGG-CTG-TGGAGG  998
      ||||||||||||||||||| ||||||||||||||||||| ||| || |||
seq2  GTTGAAAGTATATGGTTAG-TAATTGAGATGGGAGGGGGCCTGTTGAAGG  999

seq1  AAATGACTTTTCTT  1012
      ||||||||||||||
seq2  AAATGACTTTTCTT  1013

seq1: chr5_58225743_58226511
seq2: B6Ng01-130H17.g_68_844 (reverse)

seq1  ATATCTCTTCAA-CAGAGATATATCTCAAAGTCATAATGAAGTAAAGACG  49
      |||||| ||||| |||||||||||||||||||||||||||||||||||||
seq2  ATATCTTTTCAACCAGAGATATATCTCAAAGTCATAATGAAGTAAAGACG  50

seq1  ATTGGTTC-AAGCAGTAATAGTCAGCA-TCTTTGAATGAACTCACCAGAG  97
      |||||||| |||||||||||||||||| ||||||||||||||||||||||
seq2  ATTGGTTCAAAGCAGTAATAGTCAGCATTCTTTGAATGAACTCACCAGAG  100

seq1  CAAGATAAAA-GGATGGTAAATACTCCAAA--GTTTGTCTGGAACATGCT  144
      |||||||||| |||||||||||||||||||   |||||||||||||||||
seq2  CAAGATAAAAGGGATGGTAAATACTCCAAAAGTTTTGTCTGGAACATGCT  150

seq1  TATGCAAACGTATTTGCATACACAT-AAATGTATATTGTATAAGCTACCT  193
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TATGCAAACGTATTTGCATACACATAAAATGTATATTGTATAAGCTACCT  200

seq1  ATTGCTAGGCCAAAGGAGGGTTATAAATTACTTCT-AAACGCAGTCATTT  242
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATTGCTAGGCCAAAGGAGGGTTATAAATTACTTCTAAAACGCAGTCATTT  250

seq1  ATTGTTTTGCTTTTCTGAAGGTCTGAGGATGGGAATGTGGCTCAATGGGT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTGCTTTTCTGAAGGTCTGAGGATGGGAATGTGGCTCAATGGGT  300

seq1  TGAAATCCAAGTGTCAGTTTGTGTTCTTAACTGTGGTTTCTGAAGAAAGA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCCAAGTGTCAGTTTGTGTTCTTAACTGTGGTTTCTGAAGAAAGA  350

seq1  TCCACATCCTCATACTTTTTTACCTGCATGAGGTTAGCTGCAGTTTTTGT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATCCTCATACTTTTTTACCTGCATGAGGTTAGCTGCAGTTTTTGT  400

seq1  CTCACAGCCTTCTTCCATGTTTAAGGTCAACAGTGATTGGTCAGTGTGTA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGCCTTCTTCCATGTTTAAGGTCAACAGTGATTGGTCAGTGTGTA  450

seq1  CTCACTTGTGATCATTCTGACACTTGAGGCTAGTTGGTGTTACCTAGTGA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTGTGATCATTCTGACACTTGAGGCTAGTTGGTGTTACCTAGTGA  500

seq1  GCTCCAAGCCAGCTTGAGATAGAAAGTAAGAGCCTGCCCTCCCTCTCTAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAAGCCAGCTTGAGATAGAAAGTAAGAGCCTGCCCTCCCTCTCTAA  550

seq1  CTCTAAGCCTGTCTGTCTGTCTGTCTTCTCTCCTCTCTCTCCTCTCTTCC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAGCCTGTCTGTCTGTCTGTCTTCTCTCCTCTCTCTCCTCTCTTCC  600

seq1  CCCCTCTCCCCTGGCCTTCCTTGGTTTCTTTGATTCAGGTTTCTTTGAGT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTCCCCTGGCCTTCCTTGGTTTCTTTGATTCAGGTTTCTTTGAGT  650

seq1  AACAAAAGCCTGGCAGTCTTGGAAATCTGTAGGCCAGGTTTGTCTTGAAC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAGCCTGGCAGTCTTGGAAATCTGTAGGCCAGGTTTGTCTTGAAC  700

seq1  TCAGAGATCTTCCTTCTGAGTGTTAGGATCCAAGCCATGTGCCACACTTG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGATCTTCCTTCTGAGTGTTAGGATCCAAGCCATGTGCCACACTTG  750

seq1  CTTGTCTTCCTACCTTCTCAAGAATTC  769
      |||||||||||||||||||||||||||
seq2  CTTGTCTTCCTACCTTCTCAAGAATTC  777