BAC Information

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BAC

Clone NameB6Ng01-130O18
Chromosome5 (Build37)
Map Location 48,315,096 - 48,422,112
singlet/doubletdoublet
Overlap geneLOC100040876, Slit2
Upstream geneLOC100040865
Downstream gene4933428G09Rik, Kcnip4, LOC100041668
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130O18.bB6Ng01-130O18.g
ACCDH932112DH932113
length1,133566
definitionDH932112|Mus musculus domesticus DNA, BAC clone: B6Ng01-130O18, 5' end.DH932113|Mus musculus domesticus DNA, BAC clone: B6Ng01-130O18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,315,096 - 48,315,906)(48,421,541 - 48,422,112)
sequence
gaattctcaactgaggaatactgaatgcctgagaagcacataaaaatatt
caacatccatagtcatcaggaaaatgcaaatcaaaacaaccccaagattc
cacctcacaccagtcagaatggctaagatcaaaaactcaggtgatagcag
ttgctggcaagggtgtggaaaaagaggaacactcctccattgctgatgag
attgcaagctggtacaaccattctggaaatcagtttggtgattcctcaga
aaattggacatagtattaccacaggatccagcaataccactcctgggcat
atacccagaagatgctccaacatgtaataagaatgcatgctccactatgt
tcatagcagccttatttataatagccagaagctggaaagaagccagatac
ccctaaacagaggaatggatacagaaaatgtggtacatttacacaatgga
gtactactcagctattaaaaacaatgaatttctgaaatttttagacagat
ggatggatctggaggataccatcctgagtgaggtagccaaattgcaaaag
aacatatgtgctatgcactcactgataagtggctattagcccagaaactt
ggaatacccaagatacaatttgcaaaacacatgaaactcaagaagaagga
agaccaatttagaagggggaacaaaatagccatggaaggagttacagaga
caacgcgtggagcagaaactgaaggaatgaccatacagagactgctccac
catgggattccatcccatatacaaccaccaaacccagattcttatggtgg
atgtcaacaagaacttggtgacaggagcctgatatagctgtctcctggga
ataattttcttaagcctggtgctagtaggtgccaggtaaaatctaaatta
agagctaaaaggctgggccatcacaaaggaaggagagtgggaagagcctc
tcctagtactgtgcaaactaaatgagactattttagcacattccaaaaga
aagaaatagatgatgtgagaagagagaaaacagtcatgtcagtgtgagat
catctactcagaacgcaatgcgatctctagcagaattacaatgaagcact
gactgttcatctgtggaagttctgactcaggaa
aagagtagtttgtttctcagttaaagagccatgagatagatagcaaacgt
gtgtgtctagcctcctccacagccacaaaagaagcataaagggccaggtc
agataatgaaagttgtgttggtgaggggtttgtgggttttgtaatttctt
tacttgaaattgacacagcaccatttttctttaaaggaaaagtatataaa
atacatatccctgtgcagttttttataaatatactcagcgctttgcctga
cgctaatgctacctcactcactctgcctcttccatacatatgggttaaat
atgctatgcactgggctgggaactgaaccaatgtttacaacactgtttct
atggaaaaacatgttccaagttctaaatagcttacaaacatttataataa
actgctctaaaatttctttctaataggatacatgcatatatatcctatat
gtatgtgtatatatgtatacatacacacacacacacacacacacacacac
acacacatatatatacatatatatatatatatatatatatatatacacac
acacacacacacacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_48315096_48315906
seq2: B6Ng01-130O18.b_399_1180

seq1  CATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAAGCCAGATACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAAGCCAGATACC  50

seq1  CCTAAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAG  100

seq1  TACTACTCAGCTATTAAAAACAATGAATTTCTGAAATTTTTAGACAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACTCAGCTATTAAAAACAATGAATTTCTGAAATTTTTAGACAGATG  150

seq1  GATGGATCTGGAGGATACCATCCTGAGTGAGGTAGCCAAATTGCAAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATCTGGAGGATACCATCCTGAGTGAGGTAGCCAAATTGCAAAAGA  200

seq1  ACATATGTGCTATGCACTCACTGATAAGTGGCTATTAGCCCAGAAACTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGTGCTATGCACTCACTGATAAGTGGCTATTAGCCCAGAAACTTG  250

seq1  GAATACCCAAGATACAATTTGCAAAACACATGAAACTCAAGAAGAAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACCCAAGATACAATTTGCAAAACACATGAAACTCAAGAAGAAGGAA  300

seq1  GACCAATTTAGAAGGGGGAACAAAATAGCCATGGAAGGAGTTACAGAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAATTTAGAAGGGGGAACAAAATAGCCATGGAAGGAGTTACAGAGAC  350

seq1  AACGCGTGGAGCAGAAACTGAAGGAATGACCATACAGAGACTGCTCCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCGTGGAGCAGAAACTGAAGGAATGACCATACAGAGACTGCTCCACC  400

seq1  ATGGGATTCCATCCCATATACAACCACCAAACCCAGATTCTTATGGTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATTCCATCCCATATACAACCACCAAACCCAGATTCTTATGGTGGA  450

seq1  TGTCAACAAGAACTTGGTGACAGGAGCCTGATATAGCTGTCTCCTGGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAACAAGAACTTGGTGACAGGAGCCTGATATAGCTGTCTCCTGGGAA  500

seq1  TAATTTTCTTAAGCCTGGTGCTAGTAGGTGCCAGGTAAAATCTAAATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTCTTAAGCCTGGTGCTAGTAGGTGCCAGGTAAAATCTAAATTAA  550

seq1  GAGCTAAAAGGCTGGGCCATCACAAAGGAAGGAGAGTGGGAAGAGCCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAAAAGGCTGGGCCATCACAAAGGAAGGAGAGTGGGAAGAGCCTCT  600

seq1  CCTAGTACTGTGCAAACCTAAATGAAGACTAATTTTAAGCACATTCCAAA  650
      |||||||||||||||| ||||||| ||||||  ||| |||||||||||||
seq2  CCTAGTACTGTGCAAA-CTAAATG-AGACTA--TTTTAGCACATTCCAAA  646

seq1  AGGAAAGGAAATAAGAATGATGTGAGGAAGAGAGAAAACAAGTTCAATGT  700
      ||  || ||||||   ||||||||| ||||||||||||| |||   ||| 
seq2  AG--AAAGAAATA--GATGATGTGA-GAAGAGAGAAAAC-AGT--CATG-  687

seq1  TCAGTTGTGAGATCATCTTAACTCAAGAAACGCAAAATGGCGAATCTCCT  750
      |||| |||||||||||||  |||||   |||||||    ||| |||||  
seq2  TCAG-TGTGAGATCATCT--ACTCA--GAACGCAA---TGCG-ATCTC--  726

seq1  AAGCAGATATACAAATGAAAGCACTTGGAACTGTTCATCTGT-GATGTTC  799
       ||||||  ||| |||| |||||||    ||||||||||||| || ||||
seq2  TAGCAGAATTAC-AATG-AAGCACT---GACTGTTCATCTGTGGAAGTTC  771

seq1  TGGACTCAGGAA  811
      | ||||||||||
seq2  T-GACTCAGGAA  782

seq1: chr5_48421541_48422112
seq2: B6Ng01-130O18.g_69_640 (reverse)

seq1  GTGTGTGTGTGTGTGTGTGTGTATATATATATATATATATATATATATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTATATATATATATATATATATATATATAT  50

seq1  GTATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTAT  100

seq1  ACATATATACACATACATATAGGATATATATGCATGTATCCTATTAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATACACATACATATAGGATATATATGCATGTATCCTATTAGAAA  150

seq1  GAAATTTTAGAGCAGTTTATTATAAATGTTTGTAAGCTATTTAGAACTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTTAGAGCAGTTTATTATAAATGTTTGTAAGCTATTTAGAACTTG  200

seq1  GAACATGTTTTTCCATAGAAACAGTGTTGTAAACATTGGTTCAGTTCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGTTTTTCCATAGAAACAGTGTTGTAAACATTGGTTCAGTTCCCA  250

seq1  GCCCAGTGCATAGCATATTTAACCCATATGTATGGAAGAGGCAGAGTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTGCATAGCATATTTAACCCATATGTATGGAAGAGGCAGAGTGAG  300

seq1  TGAGGTAGCATTAGCGTCAGGCAAAGCGCTGAGTATATTTATAAAAAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTAGCATTAGCGTCAGGCAAAGCGCTGAGTATATTTATAAAAAACT  350

seq1  GCACAGGGATATGTATTTTATATACTTTTCCTTTAAAGAAAAATGGTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGGATATGTATTTTATATACTTTTCCTTTAAAGAAAAATGGTGCT  400

seq1  GTGTCAATTTCAAGTAAAGAAATTACAAAACCCACAAACCCCTCACCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAATTTCAAGTAAAGAAATTACAAAACCCACAAACCCCTCACCAAC  450

seq1  ACAACTTTCATTATCTGACCTGGCCCTTTATGCTTCTTTTGTGGCTGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTTCATTATCTGACCTGGCCCTTTATGCTTCTTTTGTGGCTGTGG  500

seq1  AGGAGGCTAGACACACACGTTTGCTATCTATCTCATGGCTCTTTAACTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCTAGACACACACGTTTGCTATCTATCTCATGGCTCTTTAACTGA  550

seq1  GAAACAAACTACTCTTGAATTC  572
      ||||||||||||||||||||||
seq2  GAAACAAACTACTCTTGAATTC  572