BAC Information

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BAC

Clone NameB6Ng01-130P18
Chromosome5 (Build37)
Map Location 16,904,911 - 16,906,057
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668121, Hgf, EG668131, LOC626390, LOC668142, LOC100041749, LOC100041832
Downstream geneSpeer4f, EG630927, Sema3c, Cd36, Gnat3, Gnai1, LOC100041818
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130P18.bB6Ng01-130P18.g
ACCDH932160DH932161
length1,2411,159
definitionDH932160|Mus musculus domesticus DNA, BAC clone: B6Ng01-130P18, 5' end.DH932161|Mus musculus domesticus DNA, BAC clone: B6Ng01-130P18, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgccgtctactcctcttgggtgaatttgcttcctttttttctagag
cttttagatgtgttgtccagctgctagtatgtgctctctcccggtttttc
ttgaaggcactcatagctatgagttccctcttagaaatgctttcattgtg
tcccataggtttggggtcgtggtggccttcatttcaataaactctaaaaa
gcctttaatttcttttctttattccttcttgaccaggttcattgagaaga
ggtgtgttcagttccaaggaagtgtggccttcggtatttattttgtatga
agatcagccctatggtgatgtggactgatggaactacggcattctaattg
acatactgttgaggcctcgcattgttgtagacctcatgatg
gaattctaaattttgccactgtagtgataacgttattcagccaaaaattt
ttgatgaatcaaatttcatcatttattacattgcaaataaatttaggtga
tcgttttctgcactgtggctttggaatgtgttctcatgttaactggtacc
tctgtgaagcagcctgttatcgtgtattccattggatttcagagttgttg
cctggaagcaaaaggtagcaagtgctcgaggataatccccactctgtatt
ctgagagtctgtgtgagcaaaggaggaagatggctcttcaggccaaaagc
ccaaataaatctacagcaacttttgcctgcaaacctcagacatttattat
gtgatactatcttaaattttgttttacacatctgttcctggacaataaaa
tcttaaaagattagctttttcagaaaccgcagagtcattatttttaaaat
agtttgtgtaatagatctttctcattcttcactgtgatattagaaattaa
aaaaagaagaccgtgctatgaagatgaactagaatctatctatagtttgg
tcaaatattttatgtgaagggaagaattcaagtttgtcagaaccaggata
ccactgaaatgttgtaaaatttttactgatgaatttagaagccgtttttg
cacattcatttccttggaacacataaaatctcacaggtttttacaaatat
ttaccattttatatatagtatgcatcatacatactcatgtatttgtagag
ctctatatctttagggatagacatgtatgtattttaattcacatatttta
tatatcttatattaaattttggctgtggggaggaaaagactgataatagt
caccttttcattcagtagagaaattcccagggaaggaggctctataactt
aaatgctggtagtcatgagaagagtcgtggactctgggaacatattataa
agggaacttgccctttaattatggttaaaacacccctgtggttaattttt
cataaacccacaggcaggttcagttagtttgagtttcttacgacacatta
cctaggatgaggtattgattgactggggatttagactttttggtggacta
ttaggcattggccatgcagaaatttgccttgactggatcttccaacccag
gtcattctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_16904911_16906057
seq2: B6Ng01-130P18.g_69_1227 (reverse)

seq1  CAGAATGAACCCTGGGTCTGAAG--TCAG-CTAGGCAAATTCTCTGC-TG  46
      ||||||||  |||||||  ||||   ||| | ||||||||| ||||| ||
seq2  CAGAATGA--CCTGGGTTGGAAGATCCAGTCAAGGCAAATT-TCTGCATG  47

seq1  G-CAATGCCT-ATCTTTCACACAAATAGTCTTAAATCCCAGTC-ATCCAT  93
      | |||||||| ||  | ||| |||| ||||| ||  ||||||| ||| ||
seq2  GCCAATGCCTAATAGTCCAC-CAAAAAGTCTAAATCCCCAGTCAATCAAT  96

seq1  ACCTCCATCCTA-GTAATGTGTCTGTAGATACTCAAACTAACTGACCCTG  142
      |||| ||||||| ||||||||||   ||| ||||||||||||||| ||||
seq2  ACCT-CATCCTAGGTAATGTGTCGTAAGAAACTCAAACTAACTGAACCTG  145

seq1  CCTGTGTGTTTATGAAAAAT--AACACAGGGGTGTTTTAACCATATATAA  190
      |||||| |||||||||||||  | |||||||||||||||||||||  |||
seq2  CCTGTGGGTTTATGAAAAATTAACCACAGGGGTGTTTTAACCATAATTAA  195

seq1  GGGCAAAGTTCCC-TTAT-ATATGTTCCCAGAGT-CACGACTCTTCTCAT  237
       ||  |||||||| |||| ||||||||||||||| |||||||||||||| 
seq2  AGGGCAAGTTCCCTTTATAATATGTTCCCAGAGTCCACGACTCTTCTCA-  244

seq1  TGACTA-CAGCATTTAAGTTATAGAGCCT-CTTTCCTGGGAATTTCTCTA  285
      |||||| |||||||||||||||||||||| ||| ||||||||||||||||
seq2  TGACTACCAGCATTTAAGTTATAGAGCCTCCTTCCCTGGGAATTTCTCTA  294

seq1  CTGAATG-AAAGGTGACTATTATCAGTCTTGTCCTCCCCACAGCCAAAAT  334
      ||||||| |||||||||||||||||||||| |||||||||||||||||||
seq2  CTGAATGAAAAGGTGACTATTATCAGTCTTTTCCTCCCCACAGCCAAAAT  344

seq1  TTAAT-TAAGATATATAAAGTATGTGAATTAAAATACATACATGTCTATC  383
      ||||| ||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTAATATAAGATATATAAAATATGTGAATTAAAATACATACATGTCTATC  394

seq1  CCTAAAGATATAGAGCTCTACAAATACATGAGTATGTATGATGCATACTA  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGATATAGAGCTCTACAAATACATGAGTATGTATGATGCATACTA  444

seq1  TATATAAAATGGTGAATATTTGTAAAAACCTGTGAGATTTTATGTGTTCC  483
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TATATAAAATGGTAAATATTTGTAAAAACCTGTGAGATTTTATGTGTTCC  494

seq1  AAGGAAATGAATGTGC-AAAACGGCTTCTAAATTCATCAGTAAAAATTTT  532
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAGGAAATGAATGTGCAAAAACGGCTTCTAAATTCATCAGTAAAAATTTT  544

seq1  ACAACATTTCAGTGGTATCCTGGTTCTGACAAACTTGAATTCTTCCCTTC  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATTTCAGTGGTATCCTGGTTCTGACAAACTTGAATTCTTCCCTTC  594

seq1  ACATAAAATATTTGACCAAACTATAGATAGATTCTAGTTCATCTTCATAG  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAATATTTGACCAAACTATAGATAGATTCTAGTTCATCTTCATAG  644

seq1  CACGGTCTTCTTTTTTTAATTTCTAATATCACAGTGAAGAATGAGAAAGA  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTCTTCTTTTTTTAATTTCTAATATCACAGTGAAGAATGAGAAAGA  694

seq1  TCTATTACACAAACTATTTTAAAAATAATGACTCTGCGGTTTCTGAAAAA  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTACACAAACTATTTTAAAAATAATGACTCTGCGGTTTCTGAAAAA  744

seq1  GCTAATCTTTTAAGATTTTATTGTCCAGGAACAGATGTGTAAAACAAAAT  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATCTTTTAAGATTTTATTGTCCAGGAACAGATGTGTAAAACAAAAT  794

seq1  TTAAGATAGTATCACATAATAAATGTCTGAGGTTTGCAGGCAAAAGTTGC  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATAGTATCACATAATAAATGTCTGAGGTTTGCAGGCAAAAGTTGC  844

seq1  TGTAGATTTATTTGGGCTTTTGGCCTGAAGAGCCATCTTCCTCCTTTGCT  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATTTATTTGGGCTTTTGGCCTGAAGAGCCATCTTCCTCCTTTGCT  894

seq1  CACACAGACTCTCAGAATACAGAGTGGGGATTATCCTCGAGCACTTGCTA  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGACTCTCAGAATACAGAGTGGGGATTATCCTCGAGCACTTGCTA  944

seq1  CCTTTTGCTTCCAGGCAACAACTCTGAAATCCAATGGAATACACGATAAC  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGCTTCCAGGCAACAACTCTGAAATCCAATGGAATACACGATAAC  994

seq1  AGGCTGCTTCACAGAGGTACCAGTTAACATGAGAACACATTCCAAAGCCA  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCTTCACAGAGGTACCAGTTAACATGAGAACACATTCCAAAGCCA  1044

seq1  CAGTGCAGAAAACGATCACCTAAATTTATTTGCAATGTAATAAATGATGA  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCAGAAAACGATCACCTAAATTTATTTGCAATGTAATAAATGATGA  1094

seq1  AATTTGATTCATCAAAAATTTTTGGCTGAATAACGTTATCACTACAGTGG  1132
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGATTCATCAAAAATTTTTGGCTGAATAACGTTATCACTACAGTGG  1144

seq1  CAAAATTTAGAATTC  1147
      |||||||||||||||
seq2  CAAAATTTAGAATTC  1159