BAC Information

Click to search

BAC

Clone NameB6Ng01-131A16
Chromosome5 (Build37)12 (Build37)
Map Location 43,411,096 - 43,411,84632,631,616 - 32,631,846
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040588, EG636612, LOC433883
Downstream geneEG665934, Cpeb2, C1qtnf7, 4833430A08Rik, 5730509K17Rik, Fbxl5, Bst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131A16.bB6Ng01-131A16.g
ACCDH932200DH932201
length1,145540
definitionDH932200|Mus musculus domesticus DNA, BAC clone: B6Ng01-131A16, 5' end.DH932201|Mus musculus domesticus DNA, BAC clone: B6Ng01-131A16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(43,411,096 - 43,411,846)(32,631,616 - 32,631,846)
sequence
gaattctttgtttagctctgaactccattttttaatgggtttgtttgaat
ttctggagtctagcttcttgagctctttgtatatattggatattagtccc
ctatcaaatttaggattggtaaagatccagtgtcttttgccttacagaag
ctttgcaattttatgaggtcccatttgtcaattcttgatcttacaacaca
agccattgttgttctttttaggaatttttcctttgtgcctatatcttcaa
ggcttttccctactttctcctctattaatttcagtgtctctggtcttatg
tggaggtctttgatccacttagacttgagctttgtaaaaggagataacaa
tggatcagttcacattcttctacatgataacctccagttgtgcccccgaa
ccatttgttgaaaatgctgtcttttttccactggatggttttagctccct
tgtcaaagttcaagtgaccatagttgtgtggattcatttctgggtcttca
attctattccattgatctacctgtctgtcactgtcccagtaccatgcagt
ttttatcacaattgctctgtagtacagcttaatgtcaggcatggtgattc
caccagaggttcttttattgttgagaatagtttcttctatcctaggttat
ttatttttccagatgaatttgcaaattgccatttctatctcagtgaagaa
ttgagttggaattttgatggggattgcattaaatctatagattgctttca
gccgtatagccatttttactatattaatcctgctgatccacgagcatggg
agatctttccatcttctgagatcttcttcaattataagtcccaatttcta
aggaggaagaagagaatagatagtaaggaaaactaattgtctgtgccact
gttgctgaaccatcccatagagtaagaaatagtcctagaggaattgagat
gccttttggctctcccagatctgagcccaggagtgtgagtttgcttctcc
ttactctgttctctgtatgaaaacactatgttatcaatgtggtgggatca
tgcagttggtctggaaatgtctggttcagaactctgcactgtctttccca
ctgctttgtagccaaacaatcaatgccacttcaactgggatcata
agttgctgaatggaagaaaagaaagaattagtaaactgaaaagagaaaat
ctagaatcttagaattgggaacaaaacacccatggaaggagttacagaga
caaagtttagagctgagacaaaaggatgcaccatctagagactgccatac
ccggggatccatcccataatcagcttccaaatgctgacaccatggcatac
actagcaagattttgctgaaaggacccagatatagctgtctcttgtgaga
ctatgccggggcctagcaaacacagaggtggatgctcacagtcagctatt
ggatggatcacagggcccccaatggaggagctagagaaagtatccaagga
gctgggaggatctgcaaccctataggtggaacaacaatatgaactaacca
gttacccccggagctcatgtctctagctgcatatgtatcagaagatggcc
tagttggccatcagtggaaagagaggcccattggttgtgcaaactttata
tgcctcagtacaagggaacgccagggccaagaagtgggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_43411096_43411846
seq2: B6Ng01-131A16.b_446_1189

seq1  CATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTT  50

seq1  GTCAAAGTTCAAGTGACCATAGTTGTGTGGATTCATTTCTGGGTCTTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAGTTCAAGTGACCATAGTTGTGTGGATTCATTTCTGGGTCTTCAA  100

seq1  TTCTATTCCATTGATCTACCTGTCTGTCACTGTCCCAGTACCATGCAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTCCATTGATCTACCTGTCTGTCACTGTCCCAGTACCATGCAGTT  150

seq1  TTTATCACAATTGCTCTGTAGTACAGCTTAATGTCAGGCATGGTGATTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCACAATTGCTCTGTAGTACAGCTTAATGTCAGGCATGGTGATTCC  200

seq1  ACCAGAGGTTCTTTTATTGTTGAGAATAGTTTCTTCTATCCTAGGTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGGTTCTTTTATTGTTGAGAATAGTTTCTTCTATCCTAGGTTATT  250

seq1  TATTTTTCCAGATGAATTTGCAAATTGCCATTTCTATCTCAGTGAAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCCAGATGAATTTGCAAATTGCCATTTCTATCTCAGTGAAGAAT  300

seq1  TGAGTTGGAATTTTGATGGGGATTGCATTAAATCTATAGATTGCTTTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTGGAATTTTGATGGGGATTGCATTAAATCTATAGATTGCTTTCAG  350

seq1  CCGTATAGCCATTTTTACTATATTAATCCTGCTGATCCACGAGCATGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTATAGCCATTTTTACTATATTAATCCTGCTGATCCACGAGCATGGGA  400

seq1  GATCTTTCCATCTTCTGAGATCTTCTTCAATTATAAGTCCCAATTTCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTCCATCTTCTGAGATCTTCTTCAATTATAAGTCCCAATTTCTAA  450

seq1  GGAGGAAGAAGAGAATAGATAGTAAGGAAAACTAATTGTCTGTGCCACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAGAAGAGAATAGATAGTAAGGAAAACTAATTGTCTGTGCCACTG  500

seq1  TTGCTGAACCATCCCATAGAGTAAGAAATAGTCCTAGAGGAATTGAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGAACCATCCCATAGAGTAAGAAATAGTCCTAGAGGAATTGAGATG  550

seq1  CCTTTTGGCTCTCCCAGATCTGAGCCCAGGAGTGTGAGTTTTGCTTCTCC  600
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCTTTTGGCTCTCCCAGATCTGAGCCCAGGAGTGTGAG-TTTGCTTCTCC  599

seq1  TTACTCTGTTCTCTGTATGAAAACACTATGTTATCAATGT-GTGGGATCA  649
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTACTCTGTTCTCTGTATGAAAACACTATGTTATCAATGTGGTGGGATCA  649

seq1  TGCAGTTTGGTTCTAGAAATGTCTGGTCCAAGACTCTGCACCTGTCCTTC  699
      |||||||  | ||| |||||||||||| ||  |||||||| ||||| |||
seq2  TGCAGTT--GGTCTGGAAATGTCTGGTTCAGAACTCTGCA-CTGTCTTTC  696

seq1  CCACTGCTTTGTAGCAAAACCATACATGCCACTTTTCAAACCTGGGATCA  749
      ||||||||||||||| |||| ||  |||||||  |||||  |||||||||
seq2  CCACTGCTTTGTAGCCAAACAATCAATGCCAC--TTCAA--CTGGGATCA  742

seq1  TA  751
      ||
seq2  TA  744

seq1: chr12_32631616_32631846
seq2: B6Ng01-131A16.g_338_615 (reverse)

seq1  CTCCCACTTCTTGGCCCTGGC-----------------------AAG---  24
      |||||||||||||||||||||                       |||   
seq2  CTCCCACTTCTTGGCCCTGGCGTTCCCTTGTACTGAGGCATATAAAGTTT  50

seq1  -----ACCCATGGGCCTCTCTTTCCACTGA----------------CTTC  53
           ||| |||||||||||||||||||||                ||||
seq2  GCACAACCAATGGGCCTCTCTTTCCACTGATGGCCAACTAGGCCATCTTC  100

seq1  TGATACATACGCAGCTAGAGACACGAGCTCCGGGGGT-ACTGGTCAGTTC  102
      ||||||||| ||||||||||||| ||||||||||||| |||||| |||||
seq2  TGATACATATGCAGCTAGAGACATGAGCTCCGGGGGTAACTGGTTAGTTC  150

seq1  ATAATGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGGTA  152
      ||| |||||||||||||||||||||||||| ||    |||||||||| ||
seq2  ATATTGTTGTTCCACCTATAGGGTTGCAGATCCTCCCAGCTCCTTGGATA  200

seq1  CTTTCTCTAACTCCTCCATTGGGGACCCTGTGATCCTATCCAATAGCTGA  202
      ||||||||| |||||||||||||| ||||||||||| |||||||||||||
seq2  CTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCC-ATCCAATAGCTGA  249

seq1  CTGTGAGCATCCACTTCTGTGTTTGCTAG  231
      |||||||||||||| ||||||||||||||
seq2  CTGTGAGCATCCACCTCTGTGTTTGCTAG  278