BAC Information

Click to search

BAC

Clone NameB6Ng01-131D04
Chromosome5 (Build37)
Map Location 47,036,969 - 47,146,709
singlet/doubletdoublet
Overlap genenone
Upstream gene1600023N17Rik, Lcorl, LOC100041576, EG666103
Downstream geneLOC100040865
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131D04.bB6Ng01-131D04.g
ACCDH932317DH932318
length1,1771,143
definitionDH932317|Mus musculus domesticus DNA, BAC clone: B6Ng01-131D04, 5' end.DH932318|Mus musculus domesticus DNA, BAC clone: B6Ng01-131D04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,145,520 - 47,146,709)(47,036,969 - 47,038,134)
sequence
gaattccacagtaaaattaaaactgccaggtcagaagttcttagaagaat
tatctgagaaaaagataaagcaaaactgtccttaactgctctaccagagg
tcctgaattcaattctcagcaaccacatggtggcttacaaccatctttaa
tgggatctgatgccctcttctagcgcatctgaacagagcaatggtgtact
cataaatataaaagaaataaattaattaataaaagaaaatattctaatgt
aaaatacagcatctggaaatgaaggaatatgaatatccatgcatgcattc
aaacagtatctactagatacccatgtgtatatggttttgctcagggcaaa
cataatagggtcatggattaatctctgatcctattaatctttatataagt
gacttttatattaatcaaataagttacctaaaattaataagtatatgata
gctattattagttaaaataggtgtttgtgttatctcatggccaaaggggc
cacaaagtagtttttggacaattcccctatttgaatcaaaccacaaatat
gtcttaggcccgcagctcctgggaatcttactgcgaactcagctacaatt
tgaaatctgtaactaagctagaattctgcataatcaagataggaaaagaa
aacaaatctgattcaaagggagattaactaacaggccctggaaaactcac
agttgtttctatgaaatagaaattagttgtcttgataccttgacatgtaa
tgtagctactctgaaagaatttgttgggccttctgggtatgttataggtg
ggctcagagaaaatatgttctgtgtttataaaagagggatcagtgtttgg
tagaaagatcccagcatgcatttctgccctattactttttctactcagat
ttgacaatgggaaaagaaaaaacaatcctatgaaattcattttgaactga
aagttcagaggcttgaaatccttctccagctgggaaatatcaggatgtcc
catgtagtgatcttttctaggatgctactttgctacttgtctcatcatgg
attcagagtttctgcgacaagactgctgacactgtccaagttcttggatg
tctcagcttcatttcaactggttcttacgttccgtgataatacaggactt
cttgtttcatatttttagaactctagc
gaattctatagttcaagggcatctgctgtataattttgtttaagagtcta
cagatccttccttcaaaacaaccttcaagagtgtaatcaatgattctaat
aaccccctgctctatacaatgtaagatatttcagacagattgcattagcc
tagcaaagaagagattaaaggggagaattcttactttttattagtaactc
aagaaaagatttgtataaactggtttaaaatactccatttattttcacca
agctggatttattatctaaaacttttcaaatatttaagaagagtatttgg
aattggatatcaagcacttataccagcaattttaatattaatatttatct
ttgttgaaagctgtatttgtatataacaaactttatagagattaaaatga
cttatcatgtcttttaggaccctacactatgtaaccaagccaagagaaca
ttaagcaggactgtgagtgccaaagggaactgtggctcaatgaaaatgct
tctgttatctctacctctgggctcctcatgtgatttaaagtactgaagtt
aatgttgatataaatgaaagacctgacacacacacatcaatgcaacagaa
cagacattcccaggatagacccacagaaacaccaccaactgatttttgac
aaaactacagagactactgaaaaaagaaagaattatttttcaataaattg
tgttgactcaattgttcattcatatgcagaaacagaaggcaaagtcatcc
accttatatgtccattatataccaacatggatcctaatctaaatataaaa
attgaatagttttagaagaaaatgtaagagaaaaatcttctctggtctgg
gtttagccgagttatagcattatgagactaggtatacaaaataatagaaa
tcctattttaatttcaccaaaattgaaaactctcataggctacacagagg
tgggctgtaaatataatatcacaagtggagctgaatcagggattgtgcat
ttagctagactggactacacaatgagcttctacattcacagcagcaaaca
cagcagcacaaaaagaataaataaaaccaactataacagacatttgtagt
ctcatacccccacaaaaaacttaaaacgaattgtagtttatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_47145520_47146709
seq2: B6Ng01-131D04.b_47_1223 (reverse)

seq1  GCTAGATGTCTAAAAATAATGAAACAAGAAGTCTGGTATTATCACGAGAA  50
      ||||||  ||||||||| |||||||||||||||  ||||||||||| |||
seq2  GCTAGAGTTCTAAAAAT-ATGAAACAAGAAGTCCTGTATTATCACG-GAA  48

seq1  CGTAAAGAAACAGATGAAATGGAAGCTGAGGACATCAAAGGAAAACTTTG  100
      ||| ||||| ||| |||||| |||||||| |||||| |||   ||||| |
seq2  CGT-AAGAACCAGTTGAAAT-GAAGCTGA-GACATCCAAG---AACTTGG  92

seq1  ACAGTGTCAGCAGTC-TGTCGCAGAAACTTCTGGAATCCATGATGAGACA  149
      ||||||||||||||| |||||||||||| ||| |||||||||||||||||
seq2  ACAGTGTCAGCAGTCTTGTCGCAGAAAC-TCT-GAATCCATGATGAGACA  140

seq1  AGTAGGCAAAGGTAGCATCCTAGAAAAGATCACTACATGGGACATTCTGG  199
      |||| ||||| |||||||||||||||||||||||||||||||||| || |
seq2  AGTA-GCAAA-GTAGCATCCTAGAAAAGATCACTACATGGGACATCCT-G  187

seq1  ATATTTCCCAGCTGGAGAAGGATTTTCAAGCCTCTGAACTTTTCAGTTCA  249
      |||||||||||||||||||||| |||||||||||||||| ||||||||||
seq2  ATATTTCCCAGCTGGAGAAGGA-TTTCAAGCCTCTGAAC-TTTCAGTTCA  235

seq1  AAATGAATTTCATAGGATTGTTTTTTCTTTTCCCATTGTCAAATCTGAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAATTTCATAGGATTGTTTTTTCTTTTCCCATTGTCAAATCTGAGT  285

seq1  AG-AAAAGTAATAGGGCAGAAATGCATGCTGGGATCTTTCTACCAAACAC  348
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAGTAATAGGGCAGAAATGCATGCTGGGATCTTTCTACCAAACAC  335

seq1  TGATCCCTCTTTTATAAACACAGAACATATTTTCTCTGAGCCCACCTATA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCCTCTTTTATAAACACAGAACATATTTTCTCTGAGCCCACCTATA  385

seq1  ACATACCCAGAAGGCCCAACAAATTCTTTCAGAGTAGCTACATTACATGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACCCAGAAGGCCCAACAAATTCTTTCAGAGTAGCTACATTACATGT  435

seq1  CAAGGTATCAAGACAACTAATTTCTATTTCATAGAAACAACTGTGAGTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTATCAAGACAACTAATTTCTATTTCATAGAAACAACTGTGAGTTT  485

seq1  TCCAGGGCCTGTTAGTTAATCTCCCTTTGAATCAGATTTGTTTTCTTTTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGCCTGTTAGTTAATCTCCCTTTGAATCAGATTTGTTTTCTTTTC  535

seq1  CTATCTTGATTATGCAGAATTCTAGCTTAGTTACAGATTTCAAATTGTAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTGATTATGCAGAATTCTAGCTTAGTTACAGATTTCAAATTGTAG  585

seq1  CTGAGTTCGCAGTAAGATTCCCAGGAGCTGCGGGCCTAAGACATATTTGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTCGCAGTAAGATTCCCAGGAGCTGCGGGCCTAAGACATATTTGT  635

seq1  GGTTTGATTCAAATAGGGGAATTGTCCAAAAACTACTTTGTGGCCCCTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGATTCAAATAGGGGAATTGTCCAAAAACTACTTTGTGGCCCCTTT  685

seq1  GGCCATGAGATAACACAAACACCTATTTTAACTAATAATAGCTATCATAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATGAGATAACACAAACACCTATTTTAACTAATAATAGCTATCATAT  735

seq1  ACTTATTAATTTTAGGTAACTTATTTGATTAATATAAAAGTCACTTATAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTAATTTTAGGTAACTTATTTGATTAATATAAAAGTCACTTATAT  785

seq1  AAAGATTAATAGGATCAGAGATTAATCCATGACCCTATTATGTTTGCCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTAATAGGATCAGAGATTAATCCATGACCCTATTATGTTTGCCCT  835

seq1  GAGCAAAACCATATACACATGGGTATCTAGTAGATACTGTTTGAATGCAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAAACCATATACACATGGGTATCTAGTAGATACTGTTTGAATGCAT  885

seq1  GCATGGATATTCATATTCCTTCATTTCCAGATGCTGTATTTTACATTAGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGATATTCATATTCCTTCATTTCCAGATGCTGTATTTTACATTAGA  935

seq1  ATATTTTCTTTTATTAATTAATTTATTTCTTTTATATTTATGAGTACACC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCTTTTATTAATTAATTTATTTCTTTTATATTTATGAGTACACC  985

seq1  ATTGCTCTGTTCAGATGCGCTAGAAGAGGGCATCAGATCCCATTAAAGAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCTGTTCAGATGCGCTAGAAGAGGGCATCAGATCCCATTAAAGAT  1035

seq1  GGTTGTAAGCCACCATGTGGTTGCTGAGAATTGAATTCAGGACCTCTGGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTAAGCCACCATGTGGTTGCTGAGAATTGAATTCAGGACCTCTGGT  1085

seq1  AGAGCAGTTAAGGACAGTTTTGCTTTATCTTTTTCTCAGATAATTCTTCT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGTTAAGGACAGTTTTGCTTTATCTTTTTCTCAGATAATTCTTCT  1135

seq1  AAGAACTTCTGACCTGGCAGTTTTAATTTTACTGTGGAATTC  1190
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTTCTGACCTGGCAGTTTTAATTTTACTGTGGAATTC  1177

seq1: chr5_47036969_47038134
seq2: B6Ng01-131D04.g_68_1210

seq1  GAATTCTATAGTTCAAGGGCATCTGCTGTATAATTTTGTTTAAGAGTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAGTTCAAGGGCATCTGCTGTATAATTTTGTTTAAGAGTCTA  50

seq1  CAGATCCTTCCTTCAAAACAACCTTCAAGAGTGTAATCAATGATTCTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCTTCCTTCAAAACAACCTTCAAGAGTGTAATCAATGATTCTAAT  100

seq1  AACCCCCTGCTCTATACAATGTAAGATATTTCAGACAGATTGCATTAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCCTGCTCTATACAATGTAAGATATTTCAGACAGATTGCATTAGCC  150

seq1  TAGCAAAGAAGAGATTAAAGGGGAGAATTCTTACTTTTTATTAGTAACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAAGAAGAGATTAAAGGGGAGAATTCTTACTTTTTATTAGTAACTC  200

seq1  AAGAAAAGATTTGTATAAACTGGTTTAAAATACTCCATTTATTTTCACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGATTTGTATAAACTGGTTTAAAATACTCCATTTATTTTCACCA  250

seq1  AGCTGGATTTATTATCTAAAACTTTTCAAATATTTAAGAAGAGTATTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGATTTATTATCTAAAACTTTTCAAATATTTAAGAAGAGTATTTGG  300

seq1  AATTGGATATCAAGCACTTATACCAGCAATTTTAATATTAATATTTATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGATATCAAGCACTTATACCAGCAATTTTAATATTAATATTTATCT  350

seq1  TTGTTGAAAGCTGTATTTGTATATAACAAACTTTATAGAGATTAAAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAAAGCTGTATTTGTATATAACAAACTTTATAGAGATTAAAATGA  400

seq1  CTTATCATGTCTTTTAGGACCCTACACTATGTAACCAAGCCAAGAGAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCATGTCTTTTAGGACCCTACACTATGTAACCAAGCCAAGAGAACA  450

seq1  TTAAGCAGGACTGTGAGTGCCAAAGGGAACTGTGGCTCAATGAAAATGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCAGGACTGTGAGTGCCAAAGGGAACTGTGGCTCAATGAAAATGCT  500

seq1  TCTGTTATCTCTACCTCTGGGCTCCTCATGTGATTTAAAGTACTGAAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTATCTCTACCTCTGGGCTCCTCATGTGATTTAAAGTACTGAAGTT  550

seq1  AATGTTGATATAAATGAAAGACCTGACACACACACATCAATGCAACAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGATATAAATGAAAGACCTGACACACACACATCAATGCAACAGAA  600

seq1  CAGACATTCCCAGGATAGACCCACAGAAACACCACCAACTGATTTTTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATTCCCAGGATAGACCCACAGAAACACCACCAACTGATTTTTGAC  650

seq1  AAAACTACAGAGACTACTGAAAAAAGAAAGAATTATTTTTCAATAAATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTACAGAGACTACTGAAAAAAGAAAGAATTATTTTTCAATAAATTG  700

seq1  TGTTGACTCAATTGTTCATTCATATGCAGAAACAGAAGGCAAAGTCATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACTCAATTGTTCATTCATATGCAGAAACAGAAGGCAAAGTCATCC  750

seq1  ACCTTATATGTCCATTATATACCAACATGGATCCTAATCTAAATATAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTATATGTCCATTATATACCAACATGGATCCTAATCTAAATATAAAA  800

seq1  ATTGAATAGTTTTAGAAGAAAATGTAAGAGAAAAATCTTCTCTGGTCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATAGTTTTAGAAGAAAATGTAAGAGAAAAATCTTCTCTGGTCTGG  850

seq1  GTTTAGCCGAGTTATAGCATTATGAGACTAGGTATACAAAATAATAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGCCGAGTTATAGCATTATGAGACTAGGTATACAAAATAATAGAAA  900

seq1  TCCTATTTTAATTTCACCAAAATTGAAAACTCTCATAGGCTACACAGAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTTTAATTTCACCAAAATTGAAAACTCTCATAGGCTACACAGAGG  950

seq1  TGGGCTGTAAATATAATATCAACAGGTGGGAGGCTGAATCAAGGGATTGT  1000
      |||||||||||||||||||| ||| ||||   |||||||| |||||||||
seq2  TGGGCTGTAAATATAATATC-ACAAGTGG--AGCTGAATC-AGGGATTGT  996

seq1  GCATTTAAGGCTAGACTGGACTACACAATGAGCTTCTACATTCACAGCAA  1050
      |||||||  ||||||||||||||||||||||||||||||||||||||| |
seq2  GCATTTA--GCTAGACTGGACTACACAATGAGCTTCTACATTCACAGC-A  1043

seq1  GCAAAACAACAGCAGCAACAAAAAAGAAATAAAATAAAAACAAACTATAA  1100
      |||||   |||||||| |||||||   ||||||   ||||| |||||| |
seq2  GCAAA--CACAGCAGC-ACAAAAA--GAATAAA--TAAAACCAACTAT-A  1085

seq1  ACAAGAACATTTGTAGTCTCATACCCCACACAAAAAAACTTACAAACAGA  1150
      |||   ||||||||||||||||||||| ||| |||||||||| |||| ||
seq2  ACA--GACATTTGTAGTCTCATACCCC-CAC-AAAAAACTTA-AAAC-GA  1129

seq1  ATATGTAAGTTTATGA  1166
      || ||| |||||||||
seq2  AT-TGT-AGTTTATGA  1143