BAC Information

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BAC

Clone NameB6Ng01-131H20
Chromosome5 (Build37)
Map Location 66,053,117 - 66,195,688
singlet/doubletdoublet
Overlap gene9030416H16Rik, 1700022K14Rik, LOC384261, B3bp
Upstream geneKlf3, Tlr1, Tlr6, 9130005N14Rik, Tmem156, Klhl5, Wdr19, Rfc1, Klb, Rpl9, Lias, Ugdh, 1110003E01Rik, 4930589O11Rik, Hip2
Downstream geneLOC100041809, Rhoh, LOC626641, EG666827, Chrna9, 9130230L23Rik, BC013481, LOC626714, LOC666854, LOC100042394, Nsun7, Apbb2, Uchl1, LOC100041876, 3732412D22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131H20.bB6Ng01-131H20.g
ACCDH932534DH932535
length1,0271,142
definitionDH932534|Mus musculus domesticus DNA, BAC clone: B6Ng01-131H20, 5' end.DH932535|Mus musculus domesticus DNA, BAC clone: B6Ng01-131H20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,053,117 - 66,054,066)(66,194,545 - 66,195,688)
sequence
gaattcaaaattaatacaaggcatttgcatacaatataataccttaagac
acatctcatagatgtctggtataaacaataaaactactagatagaaatca
gtttggcctctcctaaccgctaactatatagtgatcttcttctactagtt
tctctactctatgaaaagctgacttaagcaatatttgtgactttaaggag
tcagggatgtagttcagtggtagagcatttgcctagtatctagcaactat
gagtccctagattccatctcaacagtttcacaatacaatcattacttaca
tacaagtatacattcatacatgcatacatacctaattccaaaaaagcaat
gtcagcaagtaaggagactaatctgtcctgctccacagccctccactgtt
tcaggtctcgtgacttttacactacaacaacactattgcttataccagtt
gttcctcccaaacaaggggtgagatacctccttctgagttagggtttcag
aagccctagagtcatgtctaacaacagagcatttccactgctcctgactg
cccacgacaactagagggtaaaactctaccactcaatataccttggttga
aggggggggaaaaatccaagttggaattgatgtgaaaacttccctcctcc
atagctagctttcatagtgcagacagctgggagagaaaagtcaccagtgt
tattatacagtggtgaatcctaaaggctgcaatggtgtcataaaaattat
gagggtggtcaactgctttctggttggatctgaggcctgttccaaggaga
gaatacatatgcaatataataaatctggttttgcagcacatggctcagaa
attcataagctcctgaggatgataggtgggtaagaacccattcttgttgt
ttttgctaaactgtggcctcagactttatgtttataccccacagatcagc
gctgctttacaccctgacctgggaagtttctaaattaggctccagttact
gcagactcataaccagtcaaagtcctg
gaattctctatgtgaaaattaaagagtacattcactaaaacatttaaaaa
acaaaaaaacaaaaaaactgccaggcatggtggtgcatgcctttaatcct
agcacttgggaggcagaggcaggtagatttctaagttcaaggccagcctg
gtctacagagtgagttccaggacagccagggctacacaaagaaaccctgt
ctcaaaaaaaaaaaaaaaggctggagagatggcttagtggttaagagcac
cgattgctcttccaaaggtcctgagttcaaatcccagcaaccacatggaa
aaaacaaaaaaacaaaaaacaaagctaaaaaagggaaaagtggtcaatca
acctcattacaaaacaaacaaaaacaaaaactaaaaataagaaataaaag
taacaaagatgtacgcaacaaaaacaatgaagaaaaaaggaaaaaaggaa
aatcctcaaaaaaggcgtgtattcactgtataacagcagatcacaaaccc
tcagctcaaagggggaaaaaaatcatatttcacatgaattcttacttctc
ttactagcatcctcagctgacttcaggtgaaactgatcaaatagaaaata
aaacctctttatttttagtttatctgtggtgattttaagtcttcaaagct
atcattaaaaaagaaaccataggagctaggcgtggtggcatacatcttta
atcccagcactcgggaggcagaggcagacggatttctgagttcaaggcca
gcctggtctacaaagtgagttccaggacagccagggctatacagagaaac
cctgtctcggaaaaaaaaaaaagaaaacatagcttcacactgttttttat
tttttttttttgcatgtaatagacttttaacccacctgtcgtcagagcgt
atgcacacaactcaatgcgctcgggttttctctggatcggaagagctcat
gattatcggcacggagacaaagcgctgatagtgctcagcattctggatat
tttcttctttgcttactccatgaatatacgtctgaaagtccaggggaaag
gacagggtggggagaaggttgacaccaaaagtaaggaaactaagatcccc
cagggtcagagaggtctttccgctgtgcttggaactggactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_66053117_66054066
seq2: B6Ng01-131H20.b_42_996

seq1  GAATTCAAAATTAATACAAGGCATTTGCATACAATATAATACCTTAAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATTAATACAAGGCATTTGCATACAATATAATACCTTAAGAC  50

seq1  ACATCTCATAGATGTCTGGTATAAACAATAAAACTACTAGATAGAAATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCATAGATGTCTGGTATAAACAATAAAACTACTAGATAGAAATCA  100

seq1  GTTTGGCCTCTCCTAACCGCTAACTATATAGTGATCTTCTTCTACTAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGCCTCTCCTAACCGCTAACTATATAGTGATCTTCTTCTACTAGTT  150

seq1  TCTCTACTCTATGAAAAGCTGACTTAAGCAATATTTGTGACTTTAAGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACTCTATGAAAAGCTGACTTAAGCAATATTTGTGACTTTAAGGAG  200

seq1  TCAGGGATGTAGTTCAGTGGTAGAGCATTTGCCTAGTATCTAGCAACTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGATGTAGTTCAGTGGTAGAGCATTTGCCTAGTATCTAGCAACTAT  250

seq1  GAGTCCCTAGATTCCATCTCAACAGTTTCACAATACAATCATTACTTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCCTAGATTCCATCTCAACAGTTTCACAATACAATCATTACTTACA  300

seq1  TACAAGTATACATTCATACATGCATACATACCTAATTCCAAAAAAGCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGTATACATTCATACATGCATACATACCTAATTCCAAAAAAGCAAT  350

seq1  GTCAGCAAGTAAGGAGACTAATCTGTCCTGCTCCACAGCCCTCCACTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCAAGTAAGGAGACTAATCTGTCCTGCTCCACAGCCCTCCACTGTT  400

seq1  TCAGGTCTCGTGACTTTTACACTACAACAACACTATTGCTTATACCAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCTCGTGACTTTTACACTACAACAACACTATTGCTTATACCAGTT  450

seq1  GTTCCTCCCAAACAAGGGGTGAGATACCTCCTTCTGAGTTAGGGTTTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCCCAAACAAGGGGTGAGATACCTCCTTCTGAGTTAGGGTTTCAG  500

seq1  AAGCCCTAGAGTCATGTCTAACAACAGAGCATTTCCACTGCTCCTGACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCTAGAGTCATGTCTAACAACAGAGCATTTCCACTGCTCCTGACTG  550

seq1  CCCACGACAACTAGAGGGTAAAACTCTACCACTCAATATACCTTGGTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACGACAACTAGAGGGTAAAACTCTACCACTCAATATACCTTGGTTGA  600

seq1  AGGGGGGGGAAAAATCCAAGTTGGAATTGATGTGAAAACTTCCCTCCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGGGGAAAAATCCAAGTTGGAATTGATGTGAAAACTTCCCTCCTCC  650

seq1  ATAGCTAGCTTTCATAGTGCAGACAGCTGGGAGAGAAAAGTCACCAGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTAGCTTTCATAGTGCAGACAGCTGGGAGAGAAAAGTCACCAGTGT  700

seq1  TATTATACAGTGGTGAATCCTAAAGGCTGCAATGGTGTCATAAAAATTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATACAGTGGTGAATCCTAAAGGCTGCAATGGTGTCATAAAAATTAT  750

seq1  GAGGGTGGTCAACTGCTTTCTGGTTGGATCTGAGGCCTGTTCCAAGGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGGTCAACTGCTTTCTGGTTGGATCTGAGGCCTGTTCCAAGGAGA  800

seq1  GAATACATATGCAATATAATAAATCTGG-TTTGCAGCACATGGCTCAGAA  849
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAATACATATGCAATATAATAAATCTGGTTTTGCAGCACATGGCTCAGAA  850

seq1  ATTCATAAGC-CCTGAGGATGATAGGT-GGTAAGAACCCATTCTTGTTG-  896
      |||||||||| |||||||||||||||| ||||||||||||||||||||| 
seq2  ATTCATAAGCTCCTGAGGATGATAGGTGGGTAAGAACCCATTCTTGTTGT  900

seq1  TTTTGCTAAACTGTGGCCTCAGACTTTATGTTTATA-CCCACAGATCAGC  945
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTTTGCTAAACTGTGGCCTCAGACTTTATGTTTATACCCCACAGATCAGC  950

seq1  GCTGC  950
      |||||
seq2  GCTGC  955

seq1: chr5_66194545_66195688
seq2: B6Ng01-131H20.g_70_1211 (reverse)

seq1  GAGTTCAGTCCCAAGCACAGCAGAAAAGGACTTCT-GGACTTTGTGTGTT  49
      |||| |||| ||||||||||| ||||  ||| |||  |||  || | | |
seq2  GAGTCCAGTTCCAAGCACAGCGGAAA--GACCTCTCTGACCCTGGGGGAT  48

seq1  CTTTTGTTTTCTTTTCTTTTTTGTTGTCAACCTTCTTCCCA-CCTGT-CT  97
      | || |||| |||     ||||| |||||||||||| |||| ||||| ||
seq2  C-TTAGTTTCCTT---ACTTTTGGTGTCAACCTTCTCCCCACCCTGTCCT  94

seq1  CTCCCCTGGACTTTTCAGACGTAATATTCATGGAGTAAGCAAAG-AGAAA  146
       |||||||||| |||||||||| ||||||||||||||||||||| |||||
seq2  TTCCCCTGGAC-TTTCAGACGT-ATATTCATGGAGTAAGCAAAGAAGAAA  142

seq1  ATATCAAGAATGCTGGAGCACTATCAGCGCTTTGTCTCCGTGCCGATAAT  196
      ||||| |||||||| |||||||||||||||||||||||||||||||||||
seq2  ATATCCAGAATGCT-GAGCACTATCAGCGCTTTGTCTCCGTGCCGATAAT  191

seq1  CATGAGCTCTTCCGATCCAGAGAAAA-CCGAGCGCATTGAGTTGTGTGCA  245
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CATGAGCTCTTCCGATCCAGAGAAAACCCGAGCGCATTGAGTTGTGTGCA  241

seq1  TACGCTTCTGACGACAGGTGGGTT-AAAGTCTATTACATGC-AAAAAAAA  293
      ||||| |||||||||||||||||| |||||||||||||||| ||||||||
seq2  TACGC-TCTGACGACAGGTGGGTTAAAAGTCTATTACATGCAAAAAAAAA  290

seq1  AAATAAAAAACAGTGTGAAGCTATGTTTTC-TTTTTTTTTTTCCGAGACA  342
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAATAAAAAACAGTGTGAAGCTATGTTTTCTTTTTTTTTTTTCCGAGACA  340

seq1  GGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAG  390

seq1  GCTGGCCTTGAACTCAGAAATCCGTCTGCCTCTGCCTCCCGAGTGCTGGG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCTTGAACTCAGAAATCCGTCTGCCTCTGCCTCCCGAGTGCTGGG  440

seq1  ATTAAAGATGTATGCCACCACGCCTAGCTCCTATGGTTTCTTTTTTAATG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGATGTATGCCACCACGCCTAGCTCCTATGGTTTCTTTTTTAATG  490

seq1  ATAGCTTTGAAGACTTAAAATCACCACAGATAAACTAAAAATAAAGAGGT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTTTGAAGACTTAAAATCACCACAGATAAACTAAAAATAAAGAGGT  540

seq1  TTTATTTTCTATTTGATCAGTTTCACCTGAAGTCAGCTGAGGATGCTAGT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTCTATTTGATCAGTTTCACCTGAAGTCAGCTGAGGATGCTAGT  590

seq1  AAGAGAAGTAAGAATTCATGTGAAATATGATTTTTTTCCCCCTTTGAGCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGTAAGAATTCATGTGAAATATGATTTTTTTCCCCCTTTGAGCT  640

seq1  GAGGGTTTGTGATCTGCTGTTATACAGTGAATACACGCCTTTTTTGAGGA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTTTGTGATCTGCTGTTATACAGTGAATACACGCCTTTTTTGAGGA  690

seq1  TTTTCCTTTTTTCCTTTTTTCTTCATTGTTTTTGTTGCGTACATCTTTGT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTTTTTCCTTTTTTCTTCATTGTTTTTGTTGCGTACATCTTTGT  740

seq1  TACTTTTATTTCTTATTTTTAGTTTTTGTTTTTGTTTGTTTTGTAATGAG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTATTTCTTATTTTTAGTTTTTGTTTTTGTTTGTTTTGTAATGAG  790

seq1  GTTGATTGACCACTTTTCCCTTTTTTAGCTTTGTTTTTTGTTTTTTTGTT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATTGACCACTTTTCCCTTTTTTAGCTTTGTTTTTTGTTTTTTTGTT  840

seq1  TTTTCCATGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGAAGAGCAAT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCATGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGAAGAGCAAT  890

seq1  CGGTGCTCTTAACCACTAAGCCATCTCTCCAGCCTTTTTTTTTTTTTTTG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGCTCTTAACCACTAAGCCATCTCTCCAGCCTTTTTTTTTTTTTTTG  940

seq1  AGACAGGGTTTCTTTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGGTTTCTTTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAG  990

seq1  ACCAGGCTGGCCTTGAACTTAGAAATCTACCTGCCTCTGCCTCCCAAGTG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCTGGCCTTGAACTTAGAAATCTACCTGCCTCTGCCTCCCAAGTG  1040

seq1  CTAGGATTAAAGGCATGCACCACCATGCCTGGCAGTTTTTTTGTTTTTTT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGATTAAAGGCATGCACCACCATGCCTGGCAGTTTTTTTGTTTTTTT  1090

seq1  GTTTTTTAAATGTTTTAGTGAATGTACTCTTTAATTTTCACATAGAGAAT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTAAATGTTTTAGTGAATGTACTCTTTAATTTTCACATAGAGAAT  1140

seq1  TC  1144
      ||
seq2  TC  1142