BAC Information

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BAC

Clone NameB6Ng01-131K01
Chromosome6 (Build37)5 (Build37)
Map Location 100,587,198 - 100,588,34151,610,026 - 51,610,581
singlet/doubletsingletsinglet
Overlap geneShq1
Upstream geneEif4e3, Gpr27, Prok2, LOC384466, LOC626503, LOC100043703, Rybp, LOC625221
Downstream geneBC049816, Ppp4r2, EG545870, LOC100043321, Pdzrn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131K01.bB6Ng01-131K01.g
ACCDH932636DH932637
length1,145867
definitionDH932636|Mus musculus domesticus DNA, BAC clone: B6Ng01-131K01, 5' end.DH932637|Mus musculus domesticus DNA, BAC clone: B6Ng01-131K01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(100,587,198 - 100,588,341)(51,610,026 - 51,610,581)
sequence
gaattctggatgtagaaagcaaaatcagagctatttatccttaacactgc
atataaggcactttcttaaaggaggtgtctccagctttattaagagccat
gcatctgtttaaaccttccagacctttccctcctatcataacactgatac
acttaggacatttcaatagcagtttctcacttaatctttttcctaaggtt
tatccttattattttaaagtatgcgtacatgagcatacacatgtgcttct
atgtgtatgtggccatttgcacatgagtgcaggaggctggaggtgccaat
aaagacaattatgcgccacctgacatggatgccggtcaatctgatggggc
ctttgtgttaactgagctacccacttcccaaatgactctagcttgtgtca
agctgacataaattaccagcacacctacctacacatacttcccgtcctgc
ctgggaataaagttagcaatgattttcccattccgtcccagtttaatgga
tttaagtgagcatggtaagatttccaagatgacaccaaagagggacacca
cttcctatgtgggatagatcctgtcaggtgattctgtccagcacagtatg
gcaaagatgacaggacaatcactgccaggctcacattccagggtgtccta
actggtatagccctttggtgaggtggcccgtggaaaggctgtgtggcggg
tacttctgagacctctacaatctgaagatttaagagcaggcaagaaagtg
gggccacggttttacagctcctgagaagtgaattctgtcaataatggtat
gagcctggagaaaaactgtagcaaatgacacctagtttttaagagagatg
ggcatatttggctggtaagcatgtccaaccttttaacattgcaaaatgat
gctggtgtgtcatgatgatcatcacatccaaggaaccaaactatatagct
acaaaagatcactaaaagggctcatcatgttttatttaaatttagggttt
tgtgttgggctgcatcaagttctcaccccccaccggccacaggctgggca
attctgagcttcctaggtctccaaggcctggagcttgagaaccatcggag
tacctgccctgtaatggatggactggggaagaacacagggtgtgg
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttgaat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcattttcttattttgttaa
attaggatttttgtccctgtgccctttagtgagtctagctaagggtttat
ctatcttgttgattttctcaaagaaccaactcctcatttggttaattctt
tgaatagtcttgtttccactttgttgattttcccccctgagttgaataat
ttcctgccgtctactcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_100587198_100588341
seq2: B6Ng01-131K01.b_46_1190

seq1  GAATTCTGGATGTAGAAAGCAAAATCAGAGCTATTTATCCTTAACACTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGATGTAGAAAGCAAAATCAGAGCTATTTATCCTTAACACTGC  50

seq1  ATATAAGGCACTTTCTTAAAGGAGGTGTCTCCAGCTTTATTAAGAGCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGGCACTTTCTTAAAGGAGGTGTCTCCAGCTTTATTAAGAGCCAT  100

seq1  GCATCTGTTTAAACCTTCCAGACCTTTCCCTCCTATCATAACACTGATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGTTTAAACCTTCCAGACCTTTCCCTCCTATCATAACACTGATAC  150

seq1  ACTTAGGACATTTCAATAGCAGTTTCTCACTTAATCTTTTTCCTAAGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGACATTTCAATAGCAGTTTCTCACTTAATCTTTTTCCTAAGGTT  200

seq1  TATCCTTATTATTTTAAAGTATGCGTACATGAGCATACACATGTGCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTATTATTTTAAAGTATGCGTACATGAGCATACACATGTGCTTCT  250

seq1  ATGTGTATGTGGCCATTTGCACATGAGTGCAGGAGGCTGGAGGTGCCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTATGTGGCCATTTGCACATGAGTGCAGGAGGCTGGAGGTGCCAAT  300

seq1  AAAGACAATTATGCGCCACCTGACATGGATGCCGGTCAATCTGATGGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAATTATGCGCCACCTGACATGGATGCCGGTCAATCTGATGGGGC  350

seq1  CTTTGTGTTAACTGAGCTACCCACTTCCCAAATGACTCTAGCTTGTGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGTTAACTGAGCTACCCACTTCCCAAATGACTCTAGCTTGTGTCA  400

seq1  AGCTGACATAAATTACCAGCACACCTACCTACACATACTTCCCGTCCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACATAAATTACCAGCACACCTACCTACACATACTTCCCGTCCTGC  450

seq1  CTGGGAATAAAGTTAGCAATGATTTTCCCATTCCGTCCCAGTTTAATGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAATAAAGTTAGCAATGATTTTCCCATTCCGTCCCAGTTTAATGGA  500

seq1  TTTAAGTGAGCATGGTAAGATTTCCAAGATGACACCAAAGAGGGACACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTGAGCATGGTAAGATTTCCAAGATGACACCAAAGAGGGACACCA  550

seq1  CTTCCTATGTGGGATAGATCCTGTCAGGTGATTCTGTCCAGCACAGTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTATGTGGGATAGATCCTGTCAGGTGATTCTGTCCAGCACAGTATG  600

seq1  GCAAAGATGACAGGACAATCACTGCCAGGCTCACATTCCAGGGTGTCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGATGACAGGACAATCACTGCCAGGCTCACATTCCAGGGTGTCCTA  650

seq1  ACTGGTATAGCCCTTTGGTGAGGTGGCCCGTGGAAAGGCTGTGTGGCGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTATAGCCCTTTGGTGAGGTGGCCCGTGGAAAGGCTGTGTGGCGGG  700

seq1  TACTTCTGAGACCTCTACAATCTGAAGATTTAAGAGCAGGCAAGAAAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTGAGACCTCTACAATCTGAAGATTTAAGAGCAGGCAAGAAAGTG  750

seq1  GGGCCACGGTTTTACAGCTCCTGAGAAGTGAATTCTGTCAATAATGGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCACGGTTTTACAGCTCCTGAGAAGTGAATTCTGTCAATAATGGTAT  800

seq1  GAGCCTGGAGAAAAACTGTAGCAAATGACACCTAGTTTTTAAGAGAGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGGAGAAAAACTGTAGCAAATGACACCTAGTTTTTAAGAGAGATG  850

seq1  GGCATATTTGGCTGGTAAGCATGTCCAACCTTTTAACATTGCAAAATGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATATTTGGCTGGTAAGCATGTCCAACCTTTTAACATTGCAAAATGAT  900

seq1  GCTGTTGTGTCATGATGATCATCACATCCAAGGAACCAAACTATATAGCT  950
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGTGTCATGATGATCATCACATCCAAGGAACCAAACTATATAGCT  950

seq1  ACAAAAAAGATCACTAAAAGGGCTCATCATGTTTTATTTAAATTTAGGGT  1000
      ||  ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AC--AAAAGATCACTAAAAGGGCTCATCATGTTTTATTTAAATTTAGGGT  998

seq1  TTTGTGTTGGGCTGCATTCATAGTTCTCA-CCCCCACCGGCCACAGGCTG  1049
      |||||||||||||||| ||| |||||||| ||||||||||||||||||||
seq2  TTTGTGTTGGGCTGCA-TCA-AGTTCTCACCCCCCACCGGCCACAGGCTG  1046

seq1  GGCACATCTGAGC-TCCTA-GTCTCCCAAGGCCCTGAGC-TGAGAACCCA  1096
      ||||  ||||||| ||||| |||| ||||||||  |||| |||||| |||
seq2  GGCAATTCTGAGCTTCCTAGGTCT-CCAAGGCCTGGAGCTTGAGAA-CCA  1094

seq1  TCGGAGTTACCTGCCCTGTAATGGATGGACTGTG--AGAACACA--GTGT  1142
      |||||| ||||||||||||||||||||||||| |  ||||||||  ||||
seq2  TCGGAG-TACCTGCCCTGTAATGGATGGACTGGGGAAGAACACAGGGTGT  1143

seq1  GG  1144
      ||
seq2  GG  1145

seq1: chr5_51610026_51610581
seq2: B6Ng01-131K01.g_380_935 (reverse)

seq1  GGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTG-AAATCAACCAAGT  49
      ||||||||||||||||||| ||  |||||||||| | |||||||| ||||
seq2  GGAGTAGACGGCAGGAAATTATTCAACTCAGGGGGGAAAATCAACAAAGT  50

seq1  GGAAACAAGAAGAACTATTCAAAGAATTAACCAAATGAGGAGTTGGTTCT  99
      |||||||||    |||||||||||||||||||||||||||||||||||||
seq2  GGAAACAAG----ACTATTCAAAGAATTAACCAAATGAGGAGTTGGTTCT  96

seq1  TTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGG  146

seq1  CACAGGGAC-AAAATCCTAA-TTAACAAAATCAG-AAATGAAAAGGGAGA  196
      ||||||||| |||||||||| |||||||||| || |||||||||||||||
seq2  CACAGGGACAAAAATCCTAATTTAACAAAATAAGAAAATGAAAAGGGAGA  196

seq1  CATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACA  246

seq1  AAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTT  296

seq1  CTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCT  346

seq1  AAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCC  396

seq1  CAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAG  446

seq1  ACCTTCAAAGAAAATCTAATTCCAGTTCTGCACAAACTATTTCACAAAAT  496
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAAT  496

seq1  AGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTC  546

seq1  TGATACCTAA  556
      ||||||||||
seq2  TGATACCTAA  556