BAC Information

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BAC

Clone NameB6Ng01-131M06
Chromosome5 (Build37)
Map Location 17,171,220 - 17,268,338
singlet/doubletdoublet
Overlap geneSema3c
Upstream geneEG668131, LOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927
Downstream geneCd36, Gnat3, Gnai1, LOC100041818, LOC668167
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131M06.bB6Ng01-131M06.g
ACCDH932740DH932741
length1,0781,088
definitionDH932740|Mus musculus domesticus DNA, BAC clone: B6Ng01-131M06, 5' end.DH932741|Mus musculus domesticus DNA, BAC clone: B6Ng01-131M06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,171,220 - 17,172,308)(17,267,248 - 17,268,338)
sequence
gaattcttaggaagtagatgaagagtcttatttcttatttcttcttgaaa
tagatcattcatatttcacccctgtagactgtaactagactgtaatcagg
atcatggagaggagatgatgccaagtggtgaaggagtgagccactagaga
ccatctaggctattttatcagttcctcctctgccagcactgtcttatcca
gggaaatcagctcctgcctctaggaccacaagcaagattattcgattttc
ctgcttcctttcagttttataattattttcttcataaagcagatgtgtta
ggtgtcaggaggctgaatttccattctgtttttatcttcacttagctatt
attgccttgggataactccccctatatcatacttcatctatcaaaagcaa
actaatattttctacaagtaaagaaaacttctggctatgtattttgtcct
catttaataaagccatttctaactagcctctcaactctgattaccatgat
gcaaactctcttacattttaaattggttttgccatgaccattgaggtcaa
cgaaggtcaaatgattgtcatctactacccagattttataaaattaaaat
ataattacacaatttccctctttctcgtcttcctgatacttctccgatgt
tcccctctgctacaacctctcaattttatggcctccttttatttagctac
ttttatttcatgtacaaataaatcttgaaaacatattccacaaaaattaa
atagcaacatggagctttagggtttttaaaaattattttatttatttata
tcctagtaggtggccgatttgtcctattcatggtgttttttgccttacag
aagcttttcagtttctgaggtcccactttatcaattgttgatcttacaga
ctgagccactgctgttctgttcacgaaaatttcccatgtgccaatgactt
taaggctctttgccgcttctttttatagatttgtatgcctggttagtttg
agatctgatccactgaactgagctttgtgcaggaagtaaatacgacctat
ttgattttctacaatacagactgccagt
gaattcagaagagccacagatggtaattaatactgtaaacactaaacaga
agagagtccatatgcactcaattaatcaaagcatatttattgaatatctg
ctgtgtctagattcatcttatttgctatggaggaaataagaggcatataa
taatactttctagaaagtattttactagtcagtgaggtaagacaaaatta
ccaaagacattctggagaggcaatagatcgcttgcccattaccctaaaaa
aggctataaaaatcggaaatgatccatgtaaatggctcaaaaacattttc
actagtagtagtcttgggtggaaatagaaggaattggggagacagaatgc
aaatatcagaacaaaggatggataaatctagatttaacatgcaatctaag
aactacagtgaatgctctatcaagaattttagttgagattttagcttctc
ctgtcactaacaaagtggtagctatggtgtggcttgtttctctatagtga
ccattttatcagcatgcattatttgacatatttaaggtatgtgttgcata
ccttaaataatgattcattaataaatactttaacaaactgggcatttatt
atttatgagttagtattaagtatgcctacccaaaaaagcaaagactctat
ttttatgtcttaatgcaagaattatatacacataagtattcactgactga
aacaaaaatataagattgttaaaattagagagattaactgctaacatgta
tctattggtttccatcatacacacacacacacacacacacacacacacac
acacacatatatatatatatatatatatatatatatatatatttcatata
tatttatatgtatttcacacacacatgtatatgtatatgtatactattgc
tccttagtgttttcaaatgcagacttttactttttccagtggtctataga
aataacactatattaaatttgccttgagccatagagtaaattatagtaga
attatttttttgtttttattttaccccaaggctcaactttagtaattttt
gtttggtcaaatagttagggcttttttgttctaataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_17171220_17172308
seq2: B6Ng01-131M06.b_47_1124

seq1  GAATTCTTAGGAAGTAGATGAAGAGTCTTATTTCTTATTTCTTCTTGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGGAAGTAGATGAAGAGTCTTATTTCTTATTTCTTCTTGAAA  50

seq1  TAGATCATTCATATTTCACCCCTGTAGACTGTAACTAGACTGTAATCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCATTCATATTTCACCCCTGTAGACTGTAACTAGACTGTAATCAGG  100

seq1  ATCATGGAGAGGAGATGATGCCAAGTGGTGAAGGAGTGAGCCACTAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGAGAGGAGATGATGCCAAGTGGTGAAGGAGTGAGCCACTAGAGA  150

seq1  CCATCTAGGCTATTTTATCAGTTCCTCCTCTGCCAGCACTGTCTTATCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTAGGCTATTTTATCAGTTCCTCCTCTGCCAGCACTGTCTTATCCA  200

seq1  GGGAAATCAGCTCCTGCCTCTAGGACCACAAGCAAGATTATTCGATTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATCAGCTCCTGCCTCTAGGACCACAAGCAAGATTATTCGATTTTC  250

seq1  CTGCTTCCTTTCAGTTTTATAATTATTTTCTTCATAAAGCAGATGTGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCCTTTCAGTTTTATAATTATTTTCTTCATAAAGCAGATGTGTTA  300

seq1  GGTGTCAGGAGGCTGAATTTCCATTCTGTTTTTATCTTCACTTAGCTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCAGGAGGCTGAATTTCCATTCTGTTTTTATCTTCACTTAGCTATT  350

seq1  ATTGCCTTGGGATAACTCCCCCTATATCATACTTCATCTATCAAAAGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCTTGGGATAACTCCCCCTATATCATACTTCATCTATCAAAAGCAA  400

seq1  ACTAATATTTTCTACAAGTAAAGAAAACTTCTGGCTATGTATTTTGTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATATTTTCTACAAGTAAAGAAAACTTCTGGCTATGTATTTTGTCCT  450

seq1  CATTTAATAAAGCCATTTCTAACTAGCCTCTCAACTCTGATTACCATGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAATAAAGCCATTTCTAACTAGCCTCTCAACTCTGATTACCATGAT  500

seq1  GCAAACTCTCTTACATTTTAAATTGGTTTTGCCATGACCATTGAGGTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACTCTCTTACATTTTAAATTGGTTTTGCCATGACCATTGAGGTCAA  550

seq1  CGAAGGTCAAATGATTGTCATCTACTACCCAGATTTTATAAAATTAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGGTCAAATGATTGTCATCTACTACCCAGATTTTATAAAATTAAAAT  600

seq1  ATAATTACACAATTTCCCTCTTTCTCGTCTTCCTGATACTTCTCCGATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTACACAATTTCCCTCTTTCTCGTCTTCCTGATACTTCTCCGATGT  650

seq1  TCCCCTCTGCTACAACCTCTCAATTTTATGGCCTCCTTTTATTTAGCTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCTGCTACAACCTCTCAATTTTATGGCCTCCTTTTATTTAGCTAC  700

seq1  TTTTATTTCATGTACAAATAAATCTTGAAAACATATTCCACAAAAATTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTCATGTACAAATAAATCTTGAAAACATATTCCACAAAAATTAA  750

seq1  ATAGCAACATGGAGCTTTAGGGTTTTTAAAAATTATTTTATTTATTTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAACATGGAGCTTTAGGGTTTTTAAAAATTATTTTATTTATTTATA  800

seq1  TCCTAGTAGGTGGCCGATTTGTCCTATTCATGGTGTTTTTTGCCTTACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTAGGTGGCCGATTTGTCCTATTCATGGTGTTTTTTGCCTTACAG  850

seq1  AAGCTTTTCAGTTTCCTGAGGTCCCAC-TTATCAATTGTTGATCTTACAG  899
      |||||||||||||| |||||||||||| ||||||||||||||||||||||
seq2  AAGCTTTTCAGTTT-CTGAGGTCCCACTTTATCAATTGTTGATCTTACAG  899

seq1  ACTGAGCCACTGCTGTTCTGTTCACGAAAATTTCCCATGTGCCAATGACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCCACTGCTGTTCTGTTCACGAAAATTTCCCATGTGCCAATGACT  949

seq1  TTAAGGCTCTTTGCCGCTTTCTTTTTTAATAGATTTGTATGCCTGGTTTA  999
      ||||||||||||||||| ||||||||  |||||||||||||||||| |||
seq2  TTAAGGCTCTTTGCCGC-TTCTTTTT--ATAGATTTGTATGCCTGG-TTA  995

seq1  GTTTGAGATTCTTGATCCACTTGAACTTGAGCTTTGTGCAAGGTAGTAAA  1049
      |||||||||   |||||||| ||||| |||||||||||| ||| ||||||
seq2  GTTTGAGAT--CTGATCCAC-TGAAC-TGAGCTTTGTGC-AGGAAGTAAA  1040

seq1  TACAGACCTATTTTGATTTTTCTAC-ATACAGACTGCCAGT  1089
      ||| |||||| ||||| |||||||| |||||||||||||||
seq2  TAC-GACCTA-TTTGA-TTTTCTACAATACAGACTGCCAGT  1078

seq1: chr5_17267248_17268338
seq2: B6Ng01-131M06.g_68_1155 (reverse)

seq1  TTTATTAGAAC-AAAAAGCCCT-ACATTTTGACCAAAC-AAAATTACT-A  46
      ||||||||||| |||||||||| ||  ||||||||||| ||||||||| |
seq2  TTTATTAGAACAAAAAAGCCCTAACTATTTGACCAAACAAAAATTACTAA  50

seq1  AGTTGAGCCTTGGGGTAAAAATGAAAAC-AAAAAATAATTCTTACTATAA  95
      |||||||||||||||| ||||| ||||| |||||||||||| ||||||||
seq2  AGTTGAGCCTTGGGGT-AAAATAAAAACAAAAAAATAATTC-TACTATAA  98

seq1  TTTACTCTATGGCTCAAGGCAAATTTAATATAGTGTTATTTCTATAGACC  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCTATGGCTCAAGGCAAATTTAATATAGTGTTATTTCTATAGACC  148

seq1  ACTGGAAAAAAGTAAAAGTCTGCATTTTGAAAACACTAAGGAGCAATAGT  195
      ||||| |||||||||||||||||| |||||||||||||||||||||||||
seq2  ACTGG-AAAAAGTAAAAGTCTGCA-TTTGAAAACACTAAGGAGCAATAGT  196

seq1  ATACATATACATATACATGTGTGTGTGAAATACATATAAATATATATGAA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATACATATACATGTGTGTGTGAAATACATATAAATATATATGAA  246

seq1  ATATATATATATATATATATATATATATATATATATATATGTGTGTGTGT  295
          ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ----ATATATATATATATATATATATATATATATATATATGTGTGTGTGT  292

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTATGATGGAAACCAATAGATACA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTATGATGGAAACCAATAGATACA  342

seq1  TGTTAGCAGTTAATCTCTCTAATTTTAACAATCTTATATTTTTGTTTCAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGCAGTTAATCTCTCTAATTTTAACAATCTTATATTTTTGTTTCAG  392

seq1  TCAGTGAATACTTATGTGTATATAATTCTTGCATTAAGACATAAAAATAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGAATACTTATGTGTATATAATTCTTGCATTAAGACATAAAAATAG  442

seq1  AGTCTTTGCTTTTTTGGGTAGGCATACTTAATACTAACTCATAAATAATA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTGCTTTTTTGGGTAGGCATACTTAATACTAACTCATAAATAATA  492

seq1  AATGCCCAGTTTGTTAAAGTATTTATTAATGAATCATTATTTAAGGTATG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCCAGTTTGTTAAAGTATTTATTAATGAATCATTATTTAAGGTATG  542

seq1  CAACACATACCTTAAATATGTCAAATAATGCATGCTGATAAAATGGTCAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACATACCTTAAATATGTCAAATAATGCATGCTGATAAAATGGTCAC  592

seq1  TATAGAGAAACAAGCCACACCATAGCTACCACTTTGTTAGTGACAGGAGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGAAACAAGCCACACCATAGCTACCACTTTGTTAGTGACAGGAGA  642

seq1  AGCTAAAATCTCAACTAAAATTCTTGATAGAGCATTCACTGTAGTTCTTA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAAATCTCAACTAAAATTCTTGATAGAGCATTCACTGTAGTTCTTA  692

seq1  GATTGCATGTTAAATCTAGATTTATCCATCCTTTGTTCTGATATTTGCAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCATGTTAAATCTAGATTTATCCATCCTTTGTTCTGATATTTGCAT  742

seq1  TCTGTCTCCCCAATTCCTTCTATTTCCACCCAAGACTACTACTAGTGAAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCCCCAATTCCTTCTATTTCCACCCAAGACTACTACTAGTGAAA  792

seq1  ATGTTTTTGAGCCATTTACATGGATCATTTCCGATTTTTATAGCCTTTTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTTGAGCCATTTACATGGATCATTTCCGATTTTTATAGCCTTTTT  842

seq1  TAGGGTAATGGGCAAGCGATCTATTGCCTCTCCAGAATGTCTTTGGTAAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTAATGGGCAAGCGATCTATTGCCTCTCCAGAATGTCTTTGGTAAT  892

seq1  TTTGTCTTACCTCACTGACTAGTAAAATACTTTCTAGAAAGTATTATTAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTACCTCACTGACTAGTAAAATACTTTCTAGAAAGTATTATTAT  942

seq1  ATGCCTCTTATTTCCTCCATAGCAAATAAGATGAATCTAGACACAGCAGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCTTATTTCCTCCATAGCAAATAAGATGAATCTAGACACAGCAGA  992

seq1  TATTCAATAAATATGCTTTGATTAATTGAGTGCATATGGACTCTCTTCTG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAATAAATATGCTTTGATTAATTGAGTGCATATGGACTCTCTTCTG  1042

seq1  TTTAGTGTTTACAGTATTAATTACCATCTGTGGCTCTTCTGAATTC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGTTTACAGTATTAATTACCATCTGTGGCTCTTCTGAATTC  1088