This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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Search Result
BAC
Clone Name
B6Ng01-132L22
Chromosome
5 (Build37)
Map Location
19,415,606 - 19,416,160
singlet/doublet
singlet
Overlap gene
Magi2
Upstream gene
4921504A21Rik
Downstream gene
LOC100041850
,
Phtf2
,
LOC622367
,
Tmem60
,
Rsbn1l
Link
Open Mouse BAC browser
Click to get alignment info.
name
4921504A21Rik
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:70832
MGI:1918082
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST
name
Magi2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:50791
MGI:1354953
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 114 ESTs, 3 Proteins
name
LOC100041850
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100041850
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 2 Proteins
pseudo
: _no_value
name
Phtf2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:68770
MGI:1916020
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC622367
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:622367
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins
pseudo
: _no_value
name
Tmem60
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:212090
MGI:2673965
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Rsbn1l
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:242860
MGI:3036237
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
4921504A21Rik
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:149253602
GeneID:70832
MGI:1918082
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST
product
: RIKEN cDNA 4921504A21 gene
transcript_id
: XM_001477591.1
name
Magi2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:149253604
GeneID:50791
MGI:1354953
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 69 ESTs, 1 Protein
product
: membrane associated guanylate kinase, WW and PDZ domain containing 2, transcript variant 2
transcript_id
: XM_001000876.2
name
Magi2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:149253605
GeneID:50791
MGI:1354953
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 109 ESTs, 1 Protein
product
: membrane associated guanylate kinase, WW and PDZ domain containing 2, transcript variant 5
transcript_id
: XM_001000915.2
name
Phtf2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:34328396
GeneID:68770
MGI:1916020
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: putative homeodomain transcription factor 2
transcript_id
: NM_172992.2
name
Tmem60
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:113930706
GeneID:212090
MGI:2673965
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: transmembrane protein 60
transcript_id
: NM_177601.3
name
Rsbn1l
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:124430546
GeneID:242860
MGI:3036237
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: round spermatid basic protein 1-like
transcript_id
: NM_001080977.1
name
4921504A21Rik
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:149253603
GeneID:70832
MGI:1918082
definition
codon_start
: 1
product
: hypothetical protein LOC70832
protein_id
: XP_001477641.1
name
Magi2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:94374305
GeneID:50791
MGI:1354953
definition
codon_start
: 1
product
: membrane associated guanylate kinase, WW and PDZ domain containing 2 isoform 2
protein_id
: XP_001000876.1
name
Magi2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:94374307
GeneID:50791
MGI:1354953
definition
codon_start
: 1
product
: membrane associated guanylate kinase, WW and PDZ domain containing 2 isoform 5
protein_id
: XP_001000915.1
name
Phtf2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:34328397
GeneID:68770
MGI:1916020
definition
GO_component
: GO:0005634 - nucleus [Evidence IEA]
GO_function
: GO:0003677 - DNA binding [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
product
: putative homeodomain transcription factor 2
protein_id
: NP_766580.2
name
Tmem60
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:29243966
CCDS:CCDS19101.1
GeneID:212090
MGI:2673965
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
codon_start
: 1
product
: transmembrane protein 60
protein_id
: NP_808269.1
name
Rsbn1l
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:124430547
GeneID:242860
MGI:3036237
definition
codon_start
: 1
product
: round spermatid basic protein 1-like
protein_id
: NP_001074446.1
name
LOC622367
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:622367
definition
number
: 1
pseudo
: _no_value
name
LOC100041850
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149253606
GeneID:100041850
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 2 Proteins
product
: similar to mitochondrial ribosomal protein S36
pseudo
: _no_value
transcript_id
: XR_033320.1
clone name
MSMg01-172L02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-483L04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-538N19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-387G14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-457N15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-456H08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-191B12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-414O21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-380J23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-098G17
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-352C02
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-313G15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-487E16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-517K03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-393B23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-127G05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-120C16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-448G21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-233C01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-353D13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-503P21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-135B02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-539D17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-362I17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-425D16
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-341P19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-501L18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-298N01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-362N15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-305E05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-297I13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-297L18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-535E17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-374C17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-485A19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-311H15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-356H07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-484L20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-539O11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-346F12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-447F08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-353A12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-504O09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-131I21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-215K24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-499K10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-102K20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-192A17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-204G08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-144H14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-113F04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-380D13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-466B19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-181G19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-089E22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-125I17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-216D08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-182F23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-078O20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-279D20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-234M17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-415J24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-066C19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-046A06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-045M20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-535M16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-146I09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-520F14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-338M02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-279G04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-377N08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-054B02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-107A05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-410D10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-273I12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-218D17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-353D14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-463M04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-521F04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-046C07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-046F10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-146I21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-084B17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-483I11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-060F07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-156G08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-426K20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-236B15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-129N24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-121O16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-194O21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-291M19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-376B21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-490J20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-264G19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-387M10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-355E01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-338B07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-354K22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-335N03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-106N14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-458H12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-477E20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-468J16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-266O07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-421F02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-176B01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-434I14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-424J16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-105L21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-477P13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-149H15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-155N22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-164H11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-528H24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-186J06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-084M10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-109H19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-195D07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-350P11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-098P10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-201N18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-206F16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-218E14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-314F13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-243L16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-006G14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-085O12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-069N15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-067H03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-056H04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-104G13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-226K18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-245F19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-211D07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-242P21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-309J06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-004F18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-031N19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-047H12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-343E07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-212N13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-131N19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-154J01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-240C09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-085P03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-274P19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-276P21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-203M20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-062A09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-014F12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-230K09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-200L05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-302B23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-186J15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-039H02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-134A11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-268C07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-269E16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-034I01
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doublet
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B6Ng01-032I24
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doublet
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doublet
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doublet
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doublet
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B6Ng01-010I09
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B6Ng01-132L06
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B6Ng01-046D07
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