BAC Information

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BAC

Clone NameB6Ng01-132P06
Chromosome5 (Build37)
Map Location 33,857,755 - 34,022,546
singlet/doubletdoublet
Overlap gene2410018C17Rik, Slbp, Tmem129, Tacc3
Upstream geneLOC675983, Yes1, LOC100039775, Pisd, C330019G07Rik, LOC100040141, Depdc5, Ywhah, LOC100040169, Slc5a1, Spon2, Ctbp1, Maea, 4933407H18Rik, LOC672284
Downstream geneFgfr3, Letm1, LOC100040332, Whsc1, Whsc2, Gm1673, LOC100040427, Nat8l, Poln, BC023882, Mxd4, Zfyve28, EG433874, A830049F12Rik, LOC100040061, Rnf4, BC037112, LOC100040480, Tnip2, Sh3bp2, Add1, 0610009O03Rik, Nol14, Gprk2l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132P06.bB6Ng01-132P06.g
ACCDH933629DH933630
length1,150692
definitionDH933629|Mus musculus domesticus DNA, BAC clone: B6Ng01-132P06, 5' end.DH933630|Mus musculus domesticus DNA, BAC clone: B6Ng01-132P06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,857,755 - 33,858,912)(34,021,855 - 34,022,546)
sequence
gaattcacagaaatcacacccctgcccatgacatgctactagagaatgag
cctcgctttggttgagtcctgccctgaactcactcctcacctatcaaggg
accttttccacccttcacactggtcaaagacctcaagagaataggattgg
cccagcttgaaggcaactgggatcagagcaaagacattagaagaaactgt
acctcagctgtgctgttaggaactctgttaaacaggcagtaaacacacaa
gaaggaaggttctatacactttctgaaaatagttcatggatgggagtgaa
aagcatgttaaatttttgaaaataaaagttattgtgctgggcggtggtgg
cgcacgcctgtaatcttagcacttgggaggcagaggcaggcggatttctg
agttcgaggccagcctggtctacagagtgagttccaggacagccagggct
atacagaaaccctgtctcaaaaaaccaaaaaaaaaaaaaaaagttattgt
attgggtgcacaccccagcattctagctacagaggcaggagggctacata
ataaaactctatcatgaaaaacaaaaaaataaaaaataaaatgtcaccta
ttatcaactcccagggcccatgttaaaaagtaaggtctttgtggacatgg
gtcctggtgagatccaagcgtgtcttcatagaaaacgtttggacatgggt
atccatgaaaacacaaaggcagatgtcagggtgatgtttctacagaccag
ggattgccagcttcctccatgagctggagggaggccaggtgtagagtccc
ttgaacttgaccctggcccttggcatccagagttccttaggcgagttctg
tgtgcgggagagtgcctctggtgggcagcatcccacagtgtgcttctgtc
tccaggttgtggggaaggacttggattgcctgtcatccttcctgggctgt
ggggccctgacacccatggagctgtgagctctcactgcctatgtcgttag
tgtagtaacctggcttcttatggtcattagaagccttttcaatgaaggaa
ctttgttccttgatcagccttgaagcaatcaatcttcatttggttggtga
atgttttctgttcatagcatggaaattaaaggctgccgagaggacagtca

gaattcacccttttctttctaccctggtccttgcagcatgtcctgttaac
atgtcccaaaggtgtctgcttttctcttctttctcagcctggaagagagg
gggtgctcacaagtgacacaggaacaaaggtcaaacatgtcaggatacat
agaggcttggggtccagccctcatttatgacgagaacactgggtttctgg
tgagggtctatgcctggccctggctgattccagccctggacaaggattga
cattttctgatctctagccagccttgctgtctggacattcaccctggagc
ttgaggagtgtgaggagactttctgaagactctagacccaggtcctctag
gccagggtagttagtaagacttagcacaatggtaaatgggctgatatgtc
tctggtggacaggagctggaagactggaagacccaacagtcgttgtcatt
gagtcccctcattccccaaccttatgtgactgtgagtaagttgttctagg
gctgggtgggagacgctgttgatattgtgtggaagaatagccccaaggct
gggccagatatcccaggcagagggctagtcctatcaggcttcagacccca
cctaaaacatatgcagtgctggcctcatgggttcagctctggaattacca
cagttaggctcagagagttttctcggggtgggggtggggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_33857755_33858912
seq2: B6Ng01-132P06.b_49_1198

seq1  GAATTCACAGAAATCACACCCCTGCCCATGACATGCTACTAGAGAATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAAATCACACCCCTGCCCATGACATGCTACTAGAGAATGAG  50

seq1  CCTCGCTTTGGTTGAGTCCTGCCCTGAACTCACTCCTCACCTATCAAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGCTTTGGTTGAGTCCTGCCCTGAACTCACTCCTCACCTATCAAGGG  100

seq1  ACCTTTTCCACCCTTCACACTGGTCAAAGACCTCAAGAGAATAGGATTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTCCACCCTTCACACTGGTCAAAGACCTCAAGAGAATAGGATTGG  150

seq1  CCCAGCTTGAAGGCAACTGGGATCAGAGCAAAGACATTAGAAGAAACTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTTGAAGGCAACTGGGATCAGAGCAAAGACATTAGAAGAAACTGT  200

seq1  ACCTCAGCTGTGCTGTTAGGAACTCTGTTAAACAGGCAGTAAACACACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGCTGTGCTGTTAGGAACTCTGTTAAACAGGCAGTAAACACACAA  250

seq1  GAAGGAAGGTTCTATACACTTTCTGAAAATAGTTCATGGATGGGAGTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGGTTCTATACACTTTCTGAAAATAGTTCATGGATGGGAGTGAA  300

seq1  AAGCATGTTAAATTTTTGAAAATAAAAGTTATTGTGCTGGGCGGTGGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGTTAAATTTTTGAAAATAAAAGTTATTGTGCTGGGCGGTGGTGG  350

seq1  CGCACGCCTGTAATCTTAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACGCCTGTAATCTTAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTG  400

seq1  AGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCT  450

seq1  ATACAGAAACCCTGTCTCAAAAAACCAAAAAAAAAAAAAAAAGTTATTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAAACCCTGTCTCAAAAAACCAAAAAAAAAAAAAAAAGTTATTGT  500

seq1  ATTGGGTGCACACCCCAGCATTCTAGCTACAGAGGCAGGAGGGCTACATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGTGCACACCCCAGCATTCTAGCTACAGAGGCAGGAGGGCTACATA  550

seq1  ATAAAACTCTATCATGAAAAACAAAAAAATAAAAAATAAAATGTCACCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTCTATCATGAAAAACAAAAAAATAAAAAATAAAATGTCACCTA  600

seq1  TTATCAACTCCCAGGGCCCATGTTAAAAAGTAAGGTCTTTGTGGACATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAACTCCCAGGGCCCATGTTAAAAAGTAAGGTCTTTGTGGACATGG  650

seq1  GTCCTGGTGAGATCCAAGCGTGTCTTCATAGAAAACGTTTGGACATGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGTGAGATCCAAGCGTGTCTTCATAGAAAACGTTTGGACATGGGT  700

seq1  ATCCATGAAAACACAAAGGCAGATGTCAGGGTGATGTTTCTACAGACCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGAAAACACAAAGGCAGATGTCAGGGTGATGTTTCTACAGACCAG  750

seq1  GGATTGCCAGCTTCCTCCATGAGCTGGAGGGAGGCCAGGTGTAGAGTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGCCAGCTTCCTCCATGAGCTGGAGGGAGGCCAGGTGTAGAGTCCC  800

seq1  TTGAACTTGACCCTGGCCCTTGGCATCCAGAGTTCCTTAGGCGAGTTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTTGACCCTGGCCCTTGGCATCCAGAGTTCCTTAGGCGAGTTCTG  850

seq1  TGTGC-GGAGAGTGCCTCTGGTGGGCAGCATCCCACAGTGTGC-TCTGTC  898
      ||||| ||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGTGCGGGAGAGTGCCTCTGGTGGGCAGCATCCCACAGTGTGCTTCTGTC  900

seq1  TCCAGGTTGTGGGGAAGGACTT-GACTGCCTGTCATCCTTCCCTGGGCTG  947
      |||||||||||||||||||||| || |||||||||||||| |||||||||
seq2  TCCAGGTTGTGGGGAAGGACTTGGATTGCCTGTCATCCTT-CCTGGGCTG  949

seq1  TGGGGCCCTGACACCCCATGGAGCTGTGAGCTCTCCACTGCCTATGTCGT  997
      ||||||||||||| |||||||||||||||||||| |||||||||||||||
seq2  TGGGGCCCTGACA-CCCATGGAGCTGTGAGCTCT-CACTGCCTATGTCGT  997

seq1  TAGTGGTAGTAACCTGGC-TCTTATGGTCATTAG-AGCCTTTTCCAATGC  1045
      |||| ||||||||||||| ||||||||||||||| |||||||| ||||| 
seq2  TAGT-GTAGTAACCTGGCTTCTTATGGTCATTAGAAGCCTTTT-CAATG-  1044

seq1  AGGGAACCTTGTCCCCTGACCAGCCTTGAGGCCAAATCATACTTTCATT-  1094
      | ||||| |||| || ||| ||||||||| ||  ||||| |  |||||| 
seq2  AAGGAACTTTGTTCCTTGATCAGCCTTGAAGC--AATCA-ATCTTCATTT  1091

seq1  -GTTGTGTGAATGTTTTCTGTTCAGTAAGCATGAGAATAGAAAGCCTGCC  1143
       |||| ||||||||||||||||||   |||||| |||   |||| |||||
seq2  GGTTG-GTGAATGTTTTCTGTTCA--TAGCATG-GAAATTAAAGGCTGCC  1137

seq1  GGAGCAGGACAGTCA  1158
       ||| ||||||||||
seq2  -GAG-AGGACAGTCA  1150

seq1: chr5_34021855_34022546
seq2: B6Ng01-132P06.g_68_759 (reverse)

seq1  CCACCCCACCCCCACCCCGAGAAAACTCTCTGAGCCTAACTGTGGTAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCACCCCCACCCCGAGAAAACTCTCTGAGCCTAACTGTGGTAATT  50

seq1  CCAGAGCTGAACCCATGAGGCCAGCACTGCATATGTTTTAGGTGGGGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCTGAACCCATGAGGCCAGCACTGCATATGTTTTAGGTGGGGTCT  100

seq1  GAAGCCTGATAGGACTAGCCCTCTGCCTGGGATATCTGGCCCAGCCTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTGATAGGACTAGCCCTCTGCCTGGGATATCTGGCCCAGCCTTGG  150

seq1  GGCTATTCTTCCACACAATATCAACAGCGTCTCCCACCCAGCCCTAGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATTCTTCCACACAATATCAACAGCGTCTCCCACCCAGCCCTAGAAC  200

seq1  AACTTACTCACAGTCACATAAGGTTGGGGAATGAGGGGACTCAATGACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTACTCACAGTCACATAAGGTTGGGGAATGAGGGGACTCAATGACAA  250

seq1  CGACTGTTGGGTCTTCCAGTCTTCCAGCTCCTGTCCACCAGAGACATATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTGTTGGGTCTTCCAGTCTTCCAGCTCCTGTCCACCAGAGACATATC  300

seq1  AGCCCATTTACCATTGTGCTAAGTCTTACTAACTACCCTGGCCTAGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATTTACCATTGTGCTAAGTCTTACTAACTACCCTGGCCTAGAGGA  350

seq1  CCTGGGTCTAGAGTCTTCAGAAAGTCTCCTCACACTCCTCAAGCTCCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTCTAGAGTCTTCAGAAAGTCTCCTCACACTCCTCAAGCTCCAGG  400

seq1  GTGAATGTCCAGACAGCAAGGCTGGCTAGAGATCAGAAAATGTCAATCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATGTCCAGACAGCAAGGCTGGCTAGAGATCAGAAAATGTCAATCCT  450

seq1  TGTCCAGGGCTGGAATCAGCCAGGGCCAGGCATAGACCCTCACCAGAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGGGCTGGAATCAGCCAGGGCCAGGCATAGACCCTCACCAGAAAC  500

seq1  CCAGTGTTCTCGTCATAAATGAGGGCTGGACCCCAAGCCTCTATGTATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTTCTCGTCATAAATGAGGGCTGGACCCCAAGCCTCTATGTATCC  550

seq1  TGACATGTTTGACCTTTGTTCCTGTGTCACTTGTGAGCACCCCCTCTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGTTTGACCTTTGTTCCTGTGTCACTTGTGAGCACCCCCTCTCTT  600

seq1  CCAGGCTGAGAAAGAAGAGAAAAGCAGACACCTTTGGGACATGTTAACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGAGAAAGAAGAGAAAAGCAGACACCTTTGGGACATGTTAACAG  650

seq1  GACATGCTGCAAGGACCAGGGTAGAAAGAAAAGGGTGAATTC  692
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGCTGCAAGGACCAGGGTAGAAAGAAAAGGGTGAATTC  692