BAC Information

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BAC

Clone NameB6Ng01-132P23
Chromosome5 (Build37)13 (Build37)
Map Location 49,252,787 - 49,253,91910,855,925 - 10,856,441
singlet/doubletsingletsinglet
Overlap geneKcnip4
Upstream geneLOC100040876, Slit2, 4933428G09Rik
Downstream geneLOC100041668, LOC100041659, EG433885
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132P23.bB6Ng01-132P23.g
ACCDH933663DH933664
length1,1161,157
definitionDH933663|Mus musculus domesticus DNA, BAC clone: B6Ng01-132P23, 5' end.DH933664|Mus musculus domesticus DNA, BAC clone: B6Ng01-132P23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(49,252,787 - 49,253,919)(10,855,925 - 10,856,441)
sequence
gaattccacaactttaggtgaaatagaattagatgactatcagatgtagt
cgaggttcccttaggcattcttccaaaccaagttttgaagatcaggttcc
tacatagggagaagcggtgccttctgaaacttggaagtttgagatcaaag
agtcagcagagttgtgactgaatattaatttcatagtctacaagagctta
tttcttaatggtgtctatttataggcacagatgtgaatgacaaggttgac
cacatgctaattgtaatcactattctctcaggttatttcatttctgtttt
agtggatgtagcagcattatttgatcgaggaagagctctagaattacagt
tctgtctgtctctagtacataaatgagaggtgcacatggagtttccaaac
aatattagcttccaccacagcagtgtacagagatggttgacaaaagtttc
tatagagaacatagtttgaatcttttgtcaatatatagagttcgtctgtg
tttggagatcctcttgtctgtaaatgataaaccatgctgtattacaagca
cacttgcatgcaactccagtattttacttatacccagctattacaggaag
ttcataactggtatttaggtaatgactatcataattataaacagcaacaa
tttcctgctttgagtgcctatgtgttcttttatcattagtaggctgagct
catgcagttcaggctttttagatgttcttttctctgatggtggtggggta
tcaataagcttgtagtttggactcacaaaagtttatacagaacataggca
tacagataggtgactatctaacctgcatggttgtatgctttaaacctgat
tggagacagttctctataggctagaagcacagttcagataatctaaggga
cacgcttctctttcatgcttcaacattttcatctatgaagtcaaagattg
attgaaatccttagattatatatagaaaacacacacacacacacacacac
acatgtaatctactatcagaattactatcatctagtatgtacaagtgaca
ccaggttcgaacttatcttgtttaatactaagtcatgtctttcaccatgg
aaatattcacctactt
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtagatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaattagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccag
atggatggacctagagggcatcatcctgagtgaagtaacacatcacaaag
gaactcacacaatatgtactcactgataagtggatattagcccaaaacct
aggatacccaagatataagatacaatttcctaaacacatgaaacttaaga
aaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaac
aaaacacccttggaaggagttacagagacaaagtttggagctgagatgaa
aggatggaccacgtagagactgccatatccagggatccaccccataatca
gcatccaaacgctgacaccattgcatacactagcaagattttatcgaaag
gacccagatgtagctgtctcttgtgagactatgcccggggcctagcaaac
acagaagtggatgctcacagtcaggtaatggatggatcacagggctccca
atgaggagctagagaaagtacccaggagctaaagggatctgcaaccctat
aggtggaacaacatatgactaacagtaccccgagctctgactcttagctg
catattatcaaaagatggcctagtcggcatcactgaagggagccattgga
cgcacttatatgctccagtaaggacgccagcgaagggatgtgtgtgttag
ggggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_49252787_49253919
seq2: B6Ng01-132P23.b_48_1163 (reverse)

seq1  AAGTAGTTGAAATATTTTCCCATGGTGTGAAGCATGACTTAGTTATTTAA  50
      |||||| || |||||||  ||||||||  |  |||||||||||   ||||
seq2  AAGTAGGTG-AATATTT--CCATGGTGAAAGACATGACTTAGT--ATTAA  45

seq1  ACAAGAT-AGTTCTGAACCCTGGTGTCACTTGTACCATACTAAGAATGAT  99
      ||||||| ||||| ||| |||||||||||||||| |||||||   |||| 
seq2  ACAAGATAAGTTC-GAA-CCTGGTGTCACTTGTA-CATACTA--GATGA-  89

seq1  TAGTAATTCTGATATGTAGATTTACATTGTGTGTGTGTGTGTGTGTGTTG  149
      |||||||||||||| ||||| ||||| |||||||||||||||||||| ||
seq2  TAGTAATTCTGATA-GTAGA-TTACA-TGTGTGTGTGTGTGTGTGTG-TG  135

seq1  TGTTTTCTATATATAATCTAAGGATTTTCAATTCAATCTTTTGACTTCAT  199
      |||||||||||||||||||||||| |||||| |||||| |||||||||||
seq2  TGTTTTCTATATATAATCTAAGGA-TTTCAA-TCAATC-TTTGACTTCAT  182

seq1  AGATGAAAATGTTGAAGCATGAAAGAGAAGCGTGTCCCTTAGATTATCTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAAATGTTGAAGCATGAAAGAGAAGCGTGTCCCTTAGATTATCTG  232

seq1  AACTGTGCTTCTAGCCTATAGAGAACTGTCTCCAATCAGGTTTAAAGCAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGCTTCTAGCCTATAGAGAACTGTCTCCAATCAGGTTTAAAGCAT  282

seq1  ACAACCATGCAGGTTAGATAGTCACCTATCTGTATGCCTATGTTCTGTAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCATGCAGGTTAGATAGTCACCTATCTGTATGCCTATGTTCTGTAT  332

seq1  AAACTTTTGTGAGTCCAAACTACAAGCTTATTGATACCCCACCACCATCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTTGTGAGTCCAAACTACAAGCTTATTGATACCCCACCACCATCA  382

seq1  GAGAAAAGAACATCTAAAAAGCCTGAACTGCATGAGCTCAGCCTACTAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAGAACATCTAAAAAGCCTGAACTGCATGAGCTCAGCCTACTAAT  432

seq1  GATAAAAGAACACATAGGCACTCAAAGCAGGAAATTGTTGCTGTTTATAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAAGAACACATAGGCACTCAAAGCAGGAAATTGTTGCTGTTTATAA  482

seq1  TTATGATAGTCATTACCTAAATACCAGTTATGAACTTCCTGTAATAGCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGATAGTCATTACCTAAATACCAGTTATGAACTTCCTGTAATAGCTG  532

seq1  GGTATAAGTAAAATACTGGAGTTGCATGCAAGTGTGCTTGTAATACAGCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAAGTAAAATACTGGAGTTGCATGCAAGTGTGCTTGTAATACAGCA  582

seq1  TGGTTTATCATTTACAGACAAGAGGATCTCCAAACACAGACGAACTCTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTATCATTTACAGACAAGAGGATCTCCAAACACAGACGAACTCTAT  632

seq1  ATATTGACAAAAGATTCAAACTATGTTCTCTATAGAAACTTTTGTCAACC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGACAAAAGATTCAAACTATGTTCTCTATAGAAACTTTTGTCAACC  682

seq1  ATCTCTGTACACTGCTGTGGTGGAAGCTAATATTGTTTGGAAACTCCATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGTACACTGCTGTGGTGGAAGCTAATATTGTTTGGAAACTCCATG  732

seq1  TGCACCTCTCATTTATGTACTAGAGACAGACAGAACTGTAATTCTAGAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCTCTCATTTATGTACTAGAGACAGACAGAACTGTAATTCTAGAGC  782

seq1  TCTTCCTCGATCAAATAATGCTGCTACATCCACTAAAACAGAAATGAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCGATCAAATAATGCTGCTACATCCACTAAAACAGAAATGAAAT  832

seq1  AACCTGAGAGAATAGTGATTACAATTAGCATGTGGTCAACCTTGTCATTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGAGAGAATAGTGATTACAATTAGCATGTGGTCAACCTTGTCATTC  882

seq1  ACATCTGTGCCTATAAATAGACACCATTAAGAAATAAGCTCTTGTAGACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGTGCCTATAAATAGACACCATTAAGAAATAAGCTCTTGTAGACT  932

seq1  ATGAAATTAATATTCAGTCACAACTCTGCTGACTCTTTGATCTCAAACTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATTAATATTCAGTCACAACTCTGCTGACTCTTTGATCTCAAACTT  982

seq1  CCAAGTTTCAGAAGGCACCGCTTCTCCCTATGTAGGAACCTGATCTTCAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTTTCAGAAGGCACCGCTTCTCCCTATGTAGGAACCTGATCTTCAA  1032

seq1  AACTTGGTTTGGAAGAATGCCTAAGGGAACCTCGACTACATCTGATAGTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGTTTGGAAGAATGCCTAAGGGAACCTCGACTACATCTGATAGTC  1082

seq1  ATCTAATTCTATTTCACCTAAAGTTGTGGAATTC  1133
      ||||||||||||||||||||||||||||||||||
seq2  ATCTAATTCTATTTCACCTAAAGTTGTGGAATTC  1116

seq1: chr13_10855925_10856441
seq2: B6Ng01-132P23.g_927_1222 (reverse)

seq1  TTTCCCCCTAACACACACCCTGTTTCTAGGACAGACTTCCTTATAAATGT  50
                                                        
seq2  --------------------------------------------------  0

seq1  CCTAAGGTTGTATATTAAGGTTTAGCCAGACAGGTGTGAGAAAAATGAGT  100
                                                        
seq2  --------------------------------------------------  0

seq1  TTCCTAGTTTAGTATCTTTTTTTTTTAAGTATTTTTTTATTACGTATTTT  150
                                                        
seq2  --------------------------------------------------  0

seq1  CTTCAATTACATTTCCAATTCTATCCCAAAAGTCCCCCCCCCCCTACTCC  200
                                             |||||||    
seq2  ------------------------------------TTTCCCCCTA---A  11

seq1  CCTACCCATCCATTCCCATTTTTTGGCCCTGGCGTTCCCCTGTACTGGGG  250
      |  || ||||| ||            | |||||||   ||| |||||| |
seq2  CACACACATCCCTT------------CGCTGGCGT---CCT-TACTGGAG  45

seq1  CATATAAAGTTTGCCTGACCAATGGGTCTCTCTTTCCAGTGATGGCCGAC  300
      |||||||    |||  | |||||||  ||| |||  ||||||| ||||||
seq2  CATATAA---GTGC--GTCCAATGG--CTCCCTT--CAGTGAT-GCCGAC  85

seq1  TAGGCCATCTTTTGATACATATGCAGCT-AGAGTCAAGAGCTCTGGGGTA  349
      ||||||||||||||||| |||||||||| |||||| ||||||| ||||||
seq2  TAGGCCATCTTTTGATA-ATATGCAGCTAAGAGTC-AGAGCTC-GGGGTA  132

seq1  CTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCTCTTTAG  399
      || ||||| |||| ||||||||||||||||||||||||||||| ||||||
seq2  CT-GTTAG-TCAT-ATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAG  179

seq1  CTCCTTGGATACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATC  449
      |||| ||| ||||||||||||||||| ||||||| |||||||||||||||
seq2  CTCC-TGGGTACTTTCTCTAGCTCCT-CATTGGGAGCCCTGTGATCCATC  227

seq1  CAATAGTTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCC-GGCCT  498
      || ||  ||||||||||||||||||||||||||||||||||||| ||| |
seq2  CATTACCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGGCAT  277

seq1  AGTCTCACAAGGAACAGCT  517
      |||||||||||  ||||||
seq2  AGTCTCACAAGAGACAGCT  296