BAC Information

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BAC

Clone NameB6Ng01-133G12
Chromosome5 (Build37)
Map Location 66,172,224 - 66,297,361
singlet/doubletdoublet
Overlap geneB3bp, LOC100041809, Rhoh
Upstream geneKlf3, Tlr1, Tlr6, 9130005N14Rik, Tmem156, Klhl5, Wdr19, Rfc1, Klb, Rpl9, Lias, Ugdh, 1110003E01Rik, 4930589O11Rik, Hip2, 9030416H16Rik, 1700022K14Rik, LOC384261
Downstream geneLOC626641, EG666827, Chrna9, 9130230L23Rik, BC013481, LOC626714, LOC666854, LOC100042394, Nsun7, Apbb2, Uchl1, LOC100041876, 3732412D22Rik, LOC624662
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133G12.bB6Ng01-133G12.g
ACCDH933961DH933962
length1,125290
definitionDH933961|Mus musculus domesticus DNA, BAC clone: B6Ng01-133G12, 5' end.DH933962|Mus musculus domesticus DNA, BAC clone: B6Ng01-133G12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,296,227 - 66,297,361)(66,172,224 - 66,172,513)
sequence
gaattcctaaagttatatcagtgattattaagctcttttatggtgagact
gctattaggttctgatagtcaaaactgcaatgagaactctgtcagcctct
cgtgtgtcaccagttaattgctcttagatagtaaccagactttctcctac
tcagcacattctaagaggttgtaaaacaattaaaaagggaactaacgact
taatataggtgctaggacagaagacaaaatcttgactgcgtttgtcaata
caaagcttcactgataacttagttatggttttcgactttcagtgaacccg
tggagctgtgacaggtgatggatgtttagccacataattattcctagtgg
atatgcatgtaaacattctctgttgtaaatttctatttcaattcacgatt
taattttttgtatgaactttttaacatgtaatcatgtattccgaaagaag
tataaatactgagggcagagagatgagaaaagagaagaagtttttttccc
tttcctcacttagagtagaattttccccattccccacttaggatctttcc
gcttttccccttagatagctatcacaggatagttttttacaacttagtaa
tatacactataatcacttctcaaagggtccctttttcttcctgtgacatc
tgactagcaggccaaaaattagagcctcaaagttcctgccaatttagaac
aaaggtcacattacttaattcccacctctctccctctccctcaccctccc
cccccccccagcacctgctgtcaggctacaggtgtcaatcacctaagcca
gcagctttaaccctcagaaagagcaaggccgtttttaggactttttagaa
gttatcatcagcctttcggtacacttagagagctagaacatcgggagacc
ctcagactttaaagccccgccagagtcctactctgtgccccgctactatc
cttcaaagccccggaggctcccagcagtcagtgtgctttcaacagcatcc
acctgccactattgtccctcaccaccacagtttgaccagatgatcaaaga
accactgaaacctaaacttttgtctgtgagtagggtagccttttttttct
tttcttggaaataagacataataac
tctatgtaaactgggctgcctctaaactcacagagatatgcctgtttctg
cttctcagagtgctgggattgaaagcatgagccactgtgcctggctaaca
aatgtattttgtaaagtgcctaagaggtgtgtgtgtgtgtggtggggaag
gagttaagagctgctgctgaggtagcagcttccagtcctagcattctgcc
agtgaagctaacacaggtgctaagggatagcctaggaagtgagacattgt
cttaataacagtaacaacataatgattcttgtggtttggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_66296227_66297361
seq2: B6Ng01-133G12.b_47_1171 (reverse)

seq1  GTTATTATGTCATAATCTCAAAAGAAAAGAAAAAAAAAGGCTACCCCTAC  50
      ||||||||||| || |  |  |||||||| ||||||||||||| ||||||
seq2  GTTATTATGTCTTATTTCC--AAGAAAAG-AAAAAAAAGGCTA-CCCTAC  46

seq1  TCACAGGACAAAAGTTTAGGTTTTCCAGTGGTTCTGTGATCATCTGGTCA  100
      ||||| |||||||||||||||||  |||||||||| ||||||||||||||
seq2  TCACA-GACAAAAGTTTAGGTTT--CAGTGGTTCTTTGATCATCTGGTCA  93

seq1  AACTGTGGTGGTGAGGGACCAATAGTGGCAGGTGGATGCTGTTGAAAAGC  150
      |||||||||||||||||| ||||||||||||||||||||||||| |||||
seq2  AACTGTGGTGGTGAGGGA-CAATAGTGGCAGGTGGATGCTGTTG-AAAGC  141

seq1  ACACTGACTGCTGGGAGCCTCCGGGGCTTTGAAAGGATAGTAGCGGGGCA  200
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACACTGACTGCTGGGAGCCTCCGGGGCTTTG-AAGGATAGTAGCGGGGCA  190

seq1  CAGAGTAGGACTCTGGCGGGGCTTTAAAGTCTGAGGGTCTCCCGATGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTAGGACTCTGGCGGGGCTTTAAAGTCTGAGGGTCTCCCGATGTTC  240

seq1  TAGCTCTCTAAGTGTACCGAAAGGCTGATGATAACTTCTAAAAAGTCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTCTAAGTGTACCGAAAGGCTGATGATAACTTCTAAAAAGTCCTA  290

seq1  AAAACGGCCTTGCTCTTTCTGAGGGTTAAAGCTGCTGGCTTAGGTGATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGGCCTTGCTCTTTCTGAGGGTTAAAGCTGCTGGCTTAGGTGATTG  340

seq1  ACACCTGTAGCCTGACAGCAGGTGCTGGGGGGGGGGGGAGGGTGAGGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGTAGCCTGACAGCAGGTGCTGGGGGGGGGGGGAGGGTGAGGGAG  390

seq1  AGGGAGAGAGGTGGGAATTAAGTAATGTGACCTTTGTTCTAAATTGGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAGAGGTGGGAATTAAGTAATGTGACCTTTGTTCTAAATTGGCAG  440

seq1  GAACTTTGAGGCTCTAATTTTTGGCCTGCTAGTCAGATGTCACAGGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTGAGGCTCTAATTTTTGGCCTGCTAGTCAGATGTCACAGGAAGA  490

seq1  AAAAGGGACCCTTTGAGAAGTGATTATAGTGTATATTACTAAGTTGTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGACCCTTTGAGAAGTGATTATAGTGTATATTACTAAGTTGTAAA  540

seq1  AAACTATCCTGTGATAGCTATCTAAGGGGAAAAGCGGAAAGATCCTAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATCCTGTGATAGCTATCTAAGGGGAAAAGCGGAAAGATCCTAAGT  590

seq1  GGGGAATGGGGAAAATTCTACTCTAAGTGAGGAAAGGGAAAAAAACTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATGGGGAAAATTCTACTCTAAGTGAGGAAAGGGAAAAAAACTTCT  640

seq1  TCTCTTTTCTCATCTCTCTGCCCTCAGTATTTATACTTCTTTCGGAATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTCTCATCTCTCTGCCCTCAGTATTTATACTTCTTTCGGAATAC  690

seq1  ATGATTACATGTTAAAAAGTTCATACAAAAAATTAAATCGTGAATTGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTACATGTTAAAAAGTTCATACAAAAAATTAAATCGTGAATTGAAA  740

seq1  TAGAAATTTACAACAGAGAATGTTTACATGCATATCCACTAGGAATAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATTTACAACAGAGAATGTTTACATGCATATCCACTAGGAATAATT  790

seq1  ATGTGGCTAAACATCCATCACCTGTCACAGCTCCACGGGTTCACTGAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCTAAACATCCATCACCTGTCACAGCTCCACGGGTTCACTGAAAG  840

seq1  TCGAAAACCATAACTAAGTTATCAGTGAAGCTTTGTATTGACAAACGCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAAACCATAACTAAGTTATCAGTGAAGCTTTGTATTGACAAACGCAG  890

seq1  TCAAGATTTTGTCTTCTGTCCTAGCACCTATATTAAGTCGTTAGTTCCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGATTTTGTCTTCTGTCCTAGCACCTATATTAAGTCGTTAGTTCCCT  940

seq1  TTTTAATTGTTTTACAACCTCTTAGAATGTGCTGAGTAGGAGAAAGTCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTGTTTTACAACCTCTTAGAATGTGCTGAGTAGGAGAAAGTCTG  990

seq1  GTTACTATCTAAGAGCAATTAACTGGTGACACACGAGAGGCTGACAGAGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTATCTAAGAGCAATTAACTGGTGACACACGAGAGGCTGACAGAGT  1040

seq1  TCTCATTGCAGTTTTGACTATCAGAACCTAATAGCAGTCTCACCATAAAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTGCAGTTTTGACTATCAGAACCTAATAGCAGTCTCACCATAAAA  1090

seq1  GAGCTTAATAATCACTGATATAACTTTAGGAATTC  1135
      |||||||||||||||||||||||||||||||||||
seq2  GAGCTTAATAATCACTGATATAACTTTAGGAATTC  1125

seq1: chr5_66172224_66172513
seq2: B6Ng01-133G12.g_76_365

seq1  TCTATGTAAACTGGGCTGCCTCTAAACTCACAGAGATATGCCTGTTTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTAAACTGGGCTGCCTCTAAACTCACAGAGATATGCCTGTTTCTG  50

seq1  CTTCTCAGAGTGCTGGGATTGAAAGCATGAGCCACTGTGCCTGGCTAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAGAGTGCTGGGATTGAAAGCATGAGCCACTGTGCCTGGCTAACA  100

seq1  AATGTATTTTGTAAAGTGCCTAAGAGGTGTGTGTGTGTGTGGTGGGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATTTTGTAAAGTGCCTAAGAGGTGTGTGTGTGTGTGGTGGGGAAG  150

seq1  GAGTTAAGAGCTGCTGCTGAGGTAGCAGCTTCCAGTCCTAGCATTCTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAAGAGCTGCTGCTGAGGTAGCAGCTTCCAGTCCTAGCATTCTGCC  200

seq1  AGTGAAGCTAACACAGGTGCTAAGGGATAGCCTAGGAAGTGAGACATTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGCTAACACAGGTGCTAAGGGATAGCCTAGGAAGTGAGACATTGT  250

seq1  CTCAAAAACAGTAACAACAAAATGACTCTTGTGGTTTGGT  290
      || || ||||||||||||| ||||| ||||||||||||||
seq2  CTTAATAACAGTAACAACATAATGATTCTTGTGGTTTGGT  290