BAC Information

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BAC

Clone NameB6Ng01-133G17
Chromosome5 (Build37)5 (Build37)
Map Location 15,020,498 - 15,021,42715,112,601 - 15,113,387
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSema3e, LOC100042957, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1
Downstream geneSpeer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133G17.bB6Ng01-133G17.g
ACCDH933971DH933972
length1,133719
definitionDH933971|Mus musculus domesticus DNA, BAC clone: B6Ng01-133G17, 5' end.DH933972|Mus musculus domesticus DNA, BAC clone: B6Ng01-133G17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(15,020,498 - 15,021,427)(15,112,601 - 15,113,387)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctggtttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgatatgcccaattcttatgagacagcgaggaaagaaa
ggacttaagagagttggggagagagggcagattgcagagacaggttacag
gtgaggacagaacaagccaaagaataagaagagaccagacagaaggttag
aacagattgatagagttagtttgagggtaaacagactaagactaattcag
tcagaaatcaagagaaaccagtttgaaacagtttggaaaggggtttgggg
cacaatcaaagaattgaaccagaccaagttcaggaagcactagaaggata
agcctccaagatgacagttacatctggtgaataagttacttttagagtcc
tggtagttctcttacatgattatgatgttatatactgtaatgactaagag
tctaggattgtgcttaataaaaaagaagaaagtctatgtcttcatggtct
ccagaaaggacagttttgaacccattcaccccaaacagtgataaaagaaa
tccttatttttaactggtaaactagaagaccatgatcacctggcagagat
gtccataaaatggtaggatccgtaggaaaagatctactcagaaagcagtt
cttaggtcatagtctgggggcttggcagagtagagaaattctttggggaa
cttgggttcagatccagacatggctccgtcatgatttctgttgtcccaga
gcttgtagctccctgcttcatatctagcacatcatttggttggtgaataa
tgcttttcctgtgcaccctggtcatttatttctgattgttgtgacagtgt
ctttcacaatatgagtgaccacctgtgatagactgcattacttgaacagt
taaggactccccgttaattccgagtgtaacatatttatcctaaagaaatt
aagcaggacatcccaaggatatcctgaacttac
gaattcctcctctcaggtacaactgggtctttgtcaagttgataaaatgc
aagaaacatatcgtgcaaatgaaacggaagcagcattgaaagtctgagta
gccggtgggcatccctgcacatgtgcctgtgggtagctgacagatcagct
ggtttaaaagcaaggctggtggtctagtcaatcatggtcgctgttctggt
gctaaaccagattctggagaaagctctattgttgttaagacttgagagga
gcttggtggctgattatgggatggatccctgggtggggtagtctctggat
ggtccatcctctcgtcttagctttgtctccgtaactccttccatgagaat
tttgtcccctattctgatactactgcatatgccagcaagattttgctgaa
aggaccttgatatagctgtcttgtgaggctatgccagtacctggcaaaca
gaagtggatgctcacagtcatttataggatggagcacagggcctctaatg
gagaagctagagaaagcacccaaggagctgaagggatctgcaaccctata
ggtggaacaacaatatgaactaaccagtacccccagagcttgtgtctcta
gctgcatatgtagcagaagatggcctcgtcagccatcattggaaagagag
gcccctaggtcttgcaaactttatatgccacagtacagggccaagaaatg
ggagtgggtgggtggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15020498_15021427
seq2: B6Ng01-133G17.b_257_1176

seq1  GATATGCCCAATTCTTATGAGGACATCTAGGAAAGAAAGGACTTAAGAGA  50
      |||||||||||||||||||| |||| | ||||||||||||||||||||||
seq2  GATATGCCCAATTCTTATGA-GACAGCGAGGAAAGAAAGGACTTAAGAGA  49

seq1  GCTGGGGAGGGAGGGCAGATTACAGAGACAGGTTACAGGTGAAGACAGAA  100
      | ||||||| ||||||||||| |||||||||||||||||||| |||||||
seq2  GTTGGGGAGAGAGGGCAGATTGCAGAGACAGGTTACAGGTGAGGACAGAA  99

seq1  CAAGCCAGAGAATAAGAAGAGACCAGACAGAAGGTTAGAACAGATTGATA  150
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCAAAGAATAAGAAGAGACCAGACAGAAGGTTAGAACAGATTGATA  149

seq1  GAGTTAGTTTGAGGGTAAACAGACTAAGACTAATTCAGTCAGAAGTCAAG  200
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAGTTAGTTTGAGGGTAAACAGACTAAGACTAATTCAGTCAGAAATCAAG  199

seq1  AGAAACCAGTTTGAATCAGTCAGTTTGGAGAGGGGTTTGGGCCACAAGCA  250
      |||||||||||||||     ||||||||| ||||||||||| ||||| ||
seq2  AGAAACCAGTTTGAA----ACAGTTTGGAAAGGGGTTTGGGGCACAATCA  245

seq1  AAGAATTGAACCAGACCAAGTTCAGGAAGCACTAGAAGGACAAGCCTCCG  300
      |||||||||||||||||||||||||||||||||||||||| |||||||| 
seq2  AAGAATTGAACCAGACCAAGTTCAGGAAGCACTAGAAGGATAAGCCTCCA  295

seq1  AGATGACAATTACATCTGGTGAATAAGTTACCTTTAGAGTCCTGGTAGTT  350
      |||||||| |||||||||||||||||||||| ||||||||||||||||||
seq2  AGATGACAGTTACATCTGGTGAATAAGTTACTTTTAGAGTCCTGGTAGTT  345

seq1  CTCTTACGTGATTATGATGCTATATACTGTAATGACTAAGAGTCTAGGAT  400
      ||||||| ||||||||||| ||||||||||||||||||||||||||||||
seq2  CTCTTACATGATTATGATGTTATATACTGTAATGACTAAGAGTCTAGGAT  395

seq1  TGTGCTTAATCAAAAAGAAGCAAGTCTATGTCTTCATGGTCTCCAGAAAG  450
      |||||||||| ||||||||| |||||||||||||||||||||||||||||
seq2  TGTGCTTAATAAAAAAGAAGAAAGTCTATGTCTTCATGGTCTCCAGAAAG  445

seq1  GACAG-TTTGAACCCATTCACCCCAAACGGTGATAAAAGAAATCCTTATT  499
      ||||| |||||||||||||||||||||| |||||||||||||||||||||
seq2  GACAGTTTTGAACCCATTCACCCCAAACAGTGATAAAAGAAATCCTTATT  495

seq1  TTTAACTGGTAAACTAGAAGACCATGATCACCTGGCAGAGATGTCCATAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTGGTAAACTAGAAGACCATGATCACCTGGCAGAGATGTCCATAA  545

seq1  AATGGAAGGATCTGTAGG-AAAGATCTACTCAGAAAGCAGTTCTTAGGTT  598
      ||||| |||||| ||||| |||||||||||||||||||||||||||||| 
seq2  AATGGTAGGATCCGTAGGAAAAGATCTACTCAGAAAGCAGTTCTTAGGTC  595

seq1  ATAGTCTGGGAGCTTGGCAGAGTAGAGAAACTCTTTGGGGAACTT-GGTT  647
      |||||||||| ||||||||||||||||||| |||||||||||||| ||||
seq2  ATAGTCTGGGGGCTTGGCAGAGTAGAGAAATTCTTTGGGGAACTTGGGTT  645

seq1  CAGATCCAGACATGGCTCTGTCATGATTTCTGTTGTCCCAGAGCTTGTAG  697
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CAGATCCAGACATGGCTCCGTCATGATTTCTGTTGTCCCAGAGCTTGTAG  695

seq1  CT-CCTGATTCATATCTAGCATATCATTTGGTTTTGTGAATAAAGCTTTT  746
      || |||| ||||||||||||| ||||||||| || |||||||| ||||||
seq2  CTCCCTGCTTCATATCTAGCACATCATTTGG-TTGGTGAATAATGCTTTT  744

seq1  CCTGTTCA-CCTGGTCACTTATTTCTGTATTGTCTGTGACAGCGTCTTTC  795
      ||||| || |||||||| ||||||||| ||||| |||||||| |||||||
seq2  CCTGTGCACCCTGGTCATTTATTTCTG-ATTGT-TGTGACAGTGTCTTTC  792

seq1  ACAATAAGAGTTGAGCGACTGTGATAGACCTGACATTTACATGAACAGTT  845
      |||||| ||| ||| |  |||||||||| ||| || |||| |||||||||
seq2  ACAATATGAG-TGACCACCTGTGATAGA-CTG-CA-TTACTTGAACAGTT  838

seq1  TATGGAACTCCCCAGTTAATTTCGTAAGTGCTACCAATATTAT-CTAAAA  894
       |  | ||||||| ||||||| ||  |||| || ||   |||| ||||| 
seq2  AA--GGACTCCCC-GTTAATTCCG--AGTG-TAACATATTTATCCTAAAG  882

seq1  TATTTTAGCAGGAC-TCCCAAGGATATCCTG-ACTTAC  930
       | || |||||||| |||||||||||||||| ||||||
seq2  AAATTAAGCAGGACATCCCAAGGATATCCTGAACTTAC  920

seq1: chr5_15112601_15113387
seq2: B6Ng01-133G17.g_1_785

seq1  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN  50
                                                        
seq2  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN  50

seq1  NNNNNNNNNNNNNNNNGAATTCCTCTTCTCAGGTACAACTGGGTCTTTGT  100
                      ||||||||| ||||||||||||||||||||||||
seq2  NNNNNNNNNNNNNNNNGAATTCCTCCTCTCAGGTACAACTGGGTCTTTGT  100

seq1  CAAGTTGATAAAATGCAAGAAACATATCGTGCAAATGAAACGGAAGCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTGATAAAATGCAAGAAACATATCGTGCAAATGAAACGGAAGCAGC  150

seq1  ATTGAAAGTCTGAGTAGCCGGTGGGCATCCCTGCACATGTGCCTGTGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAGTCTGAGTAGCCGGTGGGCATCCCTGCACATGTGCCTGTGGGT  200

seq1  AGCTGACAGATCAGCTGGTTTAAAAGCAAGGCTGGTGGTCTAGTCAATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACAGATCAGCTGGTTTAAAAGCAAGGCTGGTGGTCTAGTCAATCA  250

seq1  TGGTCGCTGTTCTAGTGCTAAACCAGATTCTGGAGAAAGCTCTATTGTTG  300
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGGTCGCTGTTCTGGTGCTAAACCAGATTCTGGAGAAAGCTCTATTGTTG  300

seq1  TTAAGACTTGAGAGGAGCTTGGTGGCTGATTATGGGATGGATCATCGGGT  350
      |||||||||||||||||||||||||||||||||||||||||||   ||||
seq2  TTAAGACTTGAGAGGAGCTTGGTGGCTGATTATGGGATGGATCCCTGGGT  350

seq1  GGGGTAGTCTCTGGATGGTCCATCCTTTCTTCTTAGCTTTGTCTCCGTAA  400
      |||||||||||||||||||||||||| || ||||||||||||||||||||
seq2  GGGGTAGTCTCTGGATGGTCCATCCTCTCGTCTTAGCTTTGTCTCCGTAA  400

seq1  CTCCTTCCATGGCTTTTTTGTTCCCTATTCTGACACTACTGCATATGCCA  450
      |||||||||||    |||||| ||||||||||| ||||||||||||||||
seq2  CTCCTTCCATGAGAATTTTGTCCCCTATTCTGATACTACTGCATATGCCA  450

seq1  GCAAGATTTTGCTGAAAGGACCTTGATATAGCTGTCTTGTGAGGCTATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGATTTTGCTGAAAGGACCTTGATATAGCTGTCTTGTGAGGCTATGC  500

seq1  CAGTGCCTGGCAAACACAGAAGTGGATGCTCACAGTCATCTATAGGATGG  550
      |||| ||||||||  |||||||||||||||||||||||| ||||||||||
seq2  CAGTACCTGGCAA--ACAGAAGTGGATGCTCACAGTCATTTATAGGATGG  548

seq1  AGCACAGGGCCTCCAATGGAGAAGCTAGAGAAAGCACCCAAGGAGCTGAA  600
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGCACAGGGCCTCTAATGGAGAAGCTAGAGAAAGCACCCAAGGAGCTGAA  598

seq1  GGGATCTGCAACCCTATAAGTGGAACAACAATATGAACTAACCAGTACCC  650
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGGATCTGCAACCCTATAGGTGGAACAACAATATGAACTAACCAGTACCC  648

seq1  CCAGAGCTTGTGTCTCTAGCTGCATATGTAGCAGAAGATGGCCTAGTCAG  700
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCAGAGCTTGTGTCTCTAGCTGCATATGTAGCAGAAGATGGCCTCGTCAG  698

seq1  CCAGCATTGGGAAGAGAGGCCCCTAGGTCTTGCAAACTTTATATGCCGCA  750
      ||| |||||| |||||||||||||||||||||||||||||||||||| ||
seq2  CCATCATTGGAAAGAGAGGCCCCTAGGTCTTGCAAACTTTATATGCCACA  748

seq1  GTACAGGGCCAAGAAATAGGAGTGGGTGGGTGGGGGA  787
      ||||||||||||||||| |||||||||||||||||||
seq2  GTACAGGGCCAAGAAATGGGAGTGGGTGGGTGGGGGA  785