BAC Information

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BAC

Clone NameB6Ng01-134E20
Chromosome5 (Build37)
Map Location 14,958,871 - 14,959,984
singlet/doubletsinglet
Overlap geneSpeer8-ps1
Upstream geneSema3e, LOC100042957, Pclo, ENSMUSG00000033219, LOC624245
Downstream geneSpeer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134E20.bB6Ng01-134E20.g
ACCDH934635DH934636
length9971,092
definitionDH934635|Mus musculus domesticus DNA, BAC clone: B6Ng01-134E20, 5' end.DH934636|Mus musculus domesticus DNA, BAC clone: B6Ng01-134E20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttgggcaacgctgggttctgcagactttggatacctgggtttgc
aacactggccgccctcctgtaccccctgaccaaggaaggtgaaaaattta
gatggacatcagaacatcagaaagcctttaaaaatattaaggaggccttg
ctgaatgcgccagccttggcatcgccagatctaaccaagcccttcttcct
ctatgttgatgagaggacgggggtggccagaggagttcttactcaggctc
tagggccgtggaagaggccggtggcatatttgtctaagaagctggaccca
gtggccagcggatggcccacacatttaaaggccgttgctacagtagccct
actcgttaaggatgctgacaaattaactctgggacagcaaataactgtgg
tagccccccactctcttgaaagcattatccgtcagccctcagaccgatgg
atgacaaatgcctggatgactcactaccataggctgctgctgactgaacg
ggtcgtgtttgctcctcctgctattctcaatactgcctgcaaagtgatct
acgtgaccagccgtggccaggtgttccaaactggtacacagacagaagca
gtttcctagtagaagtttttgtagatacctttttgagatgggtggaggcc
tacccaacaaaaaagaaactgccaatgttgtggttaagaaaatccaaaag
aaatttttcctcggtttggaatacctaaggtaatagggtctgacaatgaa
cccagctttgttgcccaagtaagtcagggactggccatccaactggggat
tgattagaaattacattgtgtttatagaccccagagttctggctacgtag
aacgaaaaaaaaaaaaaacttgactaaattaatcttagagaccggcggga
atgactggacagccctccttcccttttctttgtccgtgttaggacacacc
aggaaatttaagcttacccattatgaaatcctgtatggtggggggag

gaattctgcactaaacccatctgttcctgggatttgtttgtttgggagac
tattaatgactgcttctaattctttaagggttatgggacagccttagctc
aggggcatagatagagacccaaccttaccagttctcctgtctagtggcac
agtccactttgccccacaatgaaatgtggatgttgtagattaaagaatat
attgaaatatgagcagtaaaatgaaaatcattcattgagagaaaaaaaaa
ttgtcttcaagtggtcattcttaatccaacctttttacaaaaccttaata
aatattcttacaaaataagcatgaaattaattgtaaaagaagaaagaaat
gtttctggcctcttgccataattgattttcaaattttttcttattaattt
taattagacattcagagaaagtagacttgagaaacagtttctagttgata
tgtaaatggtacttaacaggtcacagagatggctgaaggagcaaggacct
agaggatattcaaagaatggttcattattggccaagttgtgcttaacact
ctcataagtaacttctctcacctctaatcatgtaactatggttctatact
atatgtaatccatatctgtttctttttatcaatatcctttaagactaccc
agcactatatattttcaatgtaataattgagcaatatgctcaagtgtctt
gttgcattacgtgtaaaaatttgcaataatctttgagaataagaaaaatt
ttattttttcccagatatatgtcttagttagggttttgctgctgtaaaca
gacactatgaccatggcaactcttaaaaggagaccatttaattgggcctg
tcctacaggttcagaggttcagtccattatcatcaaggcaggagcatggc
agtgccagagcagcatgttcagagagctgagagttctacatcttcatctg
aagccagttggagagactggcttccagaagctaggaggagttctcaagca
tgacgacttctttctcaacagcatactactcaaacctcctaacagtgcat
ctggcagcatattcagccaccccaactacttccttgtctata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_14958871_14959984
seq2: B6Ng01-134E20.g_67_1158

seq1  GAATTCAGCACTAAACCCATCTGTTCCTGGGATTTGTTCGGTTGGGTGAC  50
      |||||| ||||||||||||||||||||||||||||||| | ||||| |||
seq2  GAATTCTGCACTAAACCCATCTGTTCCTGGGATTTGTTTGTTTGGGAGAC  50

seq1  TATTAATGACTGCTTCTAATTCTTTAAGGGTTATGGGACAGCCTTAGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATGACTGCTTCTAATTCTTTAAGGGTTATGGGACAGCCTTAGCTC  100

seq1  AGGGGCATAGATAGAGACCCAACCTTACCAGTTCTCCTGTCTGGTGGCAC  150
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGGGGCATAGATAGAGACCCAACCTTACCAGTTCTCCTGTCTAGTGGCAC  150

seq1  AGTCCACTTTGCCCCACAATGAAATGTGGATGTTGTAGATTAAAGAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCACTTTGCCCCACAATGAAATGTGGATGTTGTAGATTAAAGAATAT  200

seq1  ATTGAAATATGAGCAGTAAAATGAAAATCATTCATTGAGAG--AAAAAAA  248
      |||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  ATTGAAATATGAGCAGTAAAATGAAAATCATTCATTGAGAGAAAAAAAAA  250

seq1  TTGTCTCCAAGTGGTCATTCTTAATCCAACCTTTTTACAAAACCTTAATA  298
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTCAAGTGGTCATTCTTAATCCAACCTTTTTACAAAACCTTAATA  300

seq1  AATATTCTTACAAAATAAGCATGAAATTAATTGTAAAAGAAGAAAGAAAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCTTACAAAATAAGCATGAAATTAATTGTAAAAGAAGAAAGAAAT  350

seq1  GTTTCTGGCCTCTTGCCATAATTGATTTTCAATTTTTTTCTTATTAATTT  398
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTTTCTGGCCTCTTGCCATAATTGATTTTCAAATTTTTTCTTATTAATTT  400

seq1  TAATTAGACATTCAGAGAAAGTAGACTTGAGAAACAGTTTCTAGTTGATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGACATTCAGAGAAAGTAGACTTGAGAAACAGTTTCTAGTTGATA  450

seq1  TGTAAATGGTACTTAACAGGTCACAGAGATGACTGAAGGAGCAAGGACCT  498
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGTAAATGGTACTTAACAGGTCACAGAGATGGCTGAAGGAGCAAGGACCT  500

seq1  AGAGGATATTCAAAGAATGGTTCATTATTGGCCAAGTGGTGCTTAACACT  548
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGAGGATATTCAAAGAATGGTTCATTATTGGCCAAGTTGTGCTTAACACT  550

seq1  CTCATAAGTAACTTCTCTCACCTCTAATCATGTAACTATGGTTCTATACT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAAGTAACTTCTCTCACCTCTAATCATGTAACTATGGTTCTATACT  600

seq1  ATATGTAATCCATATCTGTTTCTTTTTATCAATATCCTTTAAGACTACCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAATCCATATCTGTTTCTTTTTATCAATATCCTTTAAGACTACCC  650

seq1  AGCACTATATATTTTCAATGTAATAATTGAGCAATATGCTCAAGTGTCTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTATATATTTTCAATGTAATAATTGAGCAATATGCTCAAGTGTCTT  700

seq1  GTTGCATTATGTGTAAAAATTTGCAATAATCTTTGAGAATAAGAAAAATT  748
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCATTACGTGTAAAAATTTGCAATAATCTTTGAGAATAAGAAAAATT  750

seq1  TTATTTTTGCCCAGATATAATATGTCTTAGTTAGGGTTTTGCTGCTGTAA  798
      |||||||| |||||||   |||||||||||||||||||||||||||||||
seq2  TTATTTTTTCCCAGAT---ATATGTCTTAGTTAGGGTTTTGCTGCTGTAA  797

seq1  ACAGACACTATGACCATGGCAACTCTTAAAAGGAGACCATTTAATTGGGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACACTATGACCATGGCAACTCTTAAAAGGAGACCATTTAATTGGGC  847

seq1  CTGTCCTACAGGTTCAGAGGTTCAGTCCATTATCATCAAGGCAGGAGCAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTACAGGTTCAGAGGTTCAGTCCATTATCATCAAGGCAGGAGCAT  897

seq1  GGCAGTGCCAGGGCAGGCATGGTTCAGGAGGAGCTGAGAGTTCTACATCT  948
      ||||||||||| ||| |||| ||||||   ||||||||||||||||||||
seq2  GGCAGTGCCAGAGCA-GCAT-GTTCAG--AGAGCTGAGAGTTCTACATCT  943

seq1  TCATCTGAAGGCCAGTTGGAGAAGACTGGCATCCAGGAAGCTAGGAGGGA  998
      ||||||||| ||||||||||| |||||||| |||| |||||||||| |||
seq2  TCATCTGAA-GCCAGTTGGAG-AGACTGGCTTCCA-GAAGCTAGGA-GGA  989

seq1  GGTCTCAAAGCATGACAGACTTCCTTCCTCCAACAAGGCCATACCTACTC  1048
      | |||| ||||||||| |||||| |||   |||||    |||| ||||| 
seq2  GTTCTC-AAGCATGAC-GACTTCTTTC--TCAACA---GCATA-CTACT-  1030

seq1  CATACCTCCTAACAGTGCCATCCTGGGCCAAGCATATTCAAGCCACCAC-  1097
      || |||||||||||||| ||| ||||    ||||||||| ||||||| | 
seq2  CAAACCTCCTAACAGTG-CAT-CTGG---CAGCATATTC-AGCCACCCCA  1074

seq1  ACTAC-TACTTGTCTATA  1114
      ||||| | ||||||||||
seq2  ACTACTTCCTTGTCTATA  1092


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