BAC Information

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BAC

Clone NameB6Ng01-134K20
Chromosome5 (Build37)
Map Location 79,257,046 - 79,399,511
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039398, Mthfr-ps1, EG384187
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134K20.bB6Ng01-134K20.g
ACCDH934914DH934915
length1,0111,175
definitionDH934914|Mus musculus domesticus DNA, BAC clone: B6Ng01-134K20, 5' end.DH934915|Mus musculus domesticus DNA, BAC clone: B6Ng01-134K20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,257,046 - 79,258,006)(79,398,331 - 79,399,511)
sequence
gaattcaattctcatgatgcataccgtggaaaaaattacctctaaaataa
tgtaccatatataccatgattggagagcacagtacacacaaacacacaca
cacacacacacacagacacacacacacacaaaatacccatacacacaaac
acaaaaacattcacagaaaaataagtaaatttcatttggaaaaacagtaa
tatttttcctttattctaaaatatcaagtagacaaaggatgtttttttct
atatttctacattatatgttctacattactctgaaatgtattctggacaa
ttcatattgtaaagtcataaaattcttgtcttttcttaaagaagcgtaca
cagagataagctacgagttataaaaataatcaagaaagacaaaacacaaa
aagtggttcattcattggaattcttcaaaagcacaattcaaggaaagtca
aatacgtgattgtactatagagctcatgggaatatatctaaattatctcc
tttactccaggaatatttgcttatccatatcagtaagtgtctagtctaat
aatcagaaattgaaagaaactgagatatttttgtgtgtcaactaatggat
gagaatttgataactcaaaagtgaaaccattacaccaagaaatattattt
agctgttaaaaattaaattatgaagattaaatgtagatgaataggtacta
gaagaaaaatcatcctgactgagttatcactgcccccaaaagacaaatgt
tgcttgtttttgttccttctatatgaatgttagcaattaatatttagata
agtgtgttcctattagaccatggagtttaactagatactaaaagatcaag
gaagagaaagggattcttccaagttagggccaatagaatatagtgctata
aagagatacatggtaaactggagaaagggatagagagaagggaatggaca
ggcaggatgaaagagggaatttgagtagggtgaataacactaaaggtctg
taggactgtaa
gaattctaacaaagtgacaatttgtcacaggaaacactttcgtgttctat
aggaaatggatagctaagtggtttctgaaaaaaatgaattcagtgattcc
tatattattatctactcatgaaagacatttaacactgtgccgttgctagt
acagggaatgacaaagaacagatgcacgggcattggaagtccaagcagta
ggaatgaacaggttttcttttggatgatctctgaaaggaagcaccttatt
tatttatgaggcagattaagcactaaattgctttttttgtgtttaattca
caaaagtttgtatactaataactgaaaaaccatggtagattttgcttaaa
tttaagatgtttcaatattttcattattttaaattttgtgtatgtgaaca
cacccaggtagggggatatgcattagaatgaaggcacacattgaagtcag
aggatcaaggtctcctggccatagagctacaggcatttatgagtcaccca
acagtaattcatgacaacagaaatatgagattttgaagggtaacatgagc
ccttaactcccaacacaagcacatttctttaacttccttctgttattata
gttagttgttcatttaggatagtctcttctatgaacagcgtgtaaagggc
atggcttttatgctcaaggattaaaagaaagaataatgaattttaataaa
tgactaatgtattttatgcaagaatcaacttttaaatgacaaatatttgg
gttgaataatgaacagtggcacttagtacaattcaaagactattccccct
ctagaaatttatagctttggctgataaatcattagtgtaatcaccaaagc
cactaatatagaaagacttgatagggaaagatgagttccagaaataaagg
gtaaatattaaagagtaaataagttactctagcctcatgcctgctccatc
atttgtcaactgactctttttaagaattctgacctaagattaaagacatt
ggcatatggaagttctgcaataagatgccaggaaggaaactgttggaagc
tgactagagggaaaagttctcagccagcaaataaaagaaaatttaaggga
cttcttcctcaggtaatcttcaaatagaatatggcttcacctttcatcct
gccgtggaggtttatgttcagacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_79257046_79258006
seq2: B6Ng01-134K20.b_49_1007

seq1  GAATTCAATTCTCATGATGCATACCGTGGAAAAAATTACCTCTAAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCTCATGATGCATACCGTGGAAAAAATTACCTCTAAAATAA  50

seq1  TGTACCATATATACCATGATTGGAGAGCACAGTACACACAAACACACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCATATATACCATGATTGGAGAGCACAGTACACACAAACACACACA  100

seq1  CACACACACACACAGACACACACACACACAAAATACCCATACACACAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACAGACACACACACACACAAAATACCCATACACACAAAC  150

seq1  ACAAAAACATTCACAGAAAAATAAGTAAATTTCATTTGGAAAAACAGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACATTCACAGAAAAATAAGTAAATTTCATTTGGAAAAACAGTAA  200

seq1  TATTTTTCCTTTATTCTAAAATATCAAGTAGACAAAGGATGTTTTTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCCTTTATTCTAAAATATCAAGTAGACAAAGGATGTTTTTTTCT  250

seq1  ATATTTCTACATTATATGTTCTACATTACTCTGAAATGTATTCTGGACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTACATTATATGTTCTACATTACTCTGAAATGTATTCTGGACAA  300

seq1  TTCATATTGTAAAGTCATAAAATTCTTGTCTTTTCTTAAAGAAGCGTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATTGTAAAGTCATAAAATTCTTGTCTTTTCTTAAAGAAGCGTACA  350

seq1  CAGAGATAAGCTACGAGTTATAAAAATAATCAAGAAAGACAAAACACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATAAGCTACGAGTTATAAAAATAATCAAGAAAGACAAAACACAAA  400

seq1  AAGTGGTTCATTCATTGGAATTCTTCAAAAGCACAATTCAAGGAAAGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGTTCATTCATTGGAATTCTTCAAAAGCACAATTCAAGGAAAGTCA  450

seq1  AATACGTGATTGTACTATAGAGCTCATGGGAATATATCTAAATTATCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACGTGATTGTACTATAGAGCTCATGGGAATATATCTAAATTATCTCC  500

seq1  TTTACTCCAGGAATATTTGCTTATCCATATCAGTAAGTGTCTAGTCTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCCAGGAATATTTGCTTATCCATATCAGTAAGTGTCTAGTCTAAT  550

seq1  AATCAGAAATTGAAAGAAACTGAGATATTTTTGTGTGTCAACTAATGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGAAATTGAAAGAAACTGAGATATTTTTGTGTGTCAACTAATGGAT  600

seq1  GAGAATTTGATAACTCAAAAGTGAAACCATTACACCAAGAAATATTATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTTGATAACTCAAAAGTGAAACCATTACACCAAGAAATATTATTT  650

seq1  AGCTGTTAAAAATTAAATTATGAAGATTAAATGTAGATGAATAGGTACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTAAAAATTAAATTATGAAGATTAAATGTAGATGAATAGGTACTA  700

seq1  GAAGAAAAATCATCCTGACTGAGTTATCACTGCCCCCAAAAGACAAATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAAATCATCCTGACTGAGTTATCACTGCCCCCAAAAGACAAATGT  750

seq1  TGCTTGTTTTTGTTCCTTCTATATGAATGTTAGCAATTAATATTTAGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTTTTTGTTCCTTCTATATGAATGTTAGCAATTAATATTTAGATA  800

seq1  AGTGTGTTCCTATTAGACCATGGAGTTTAACTAGATACTAAAAGATCAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTTCCTATTAGACCATGGAGTTTAACTAGATACTAAAAGATCAAG  850

seq1  GAAGAG-AAGGGATTCTTCCAAGTTAGGGCCAATAGAATATAGTGCTATA  899
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAAAGGGATTCTTCCAAGTTAGGGCCAATAGAATATAGTGCTATA  900

seq1  AAGAGATACATGGTAAACTGGAGAAAGGGAATAGAAGAAGAAGGGAATGG  949
      ||||||||||||||||||||||||||||| |||||   ||||||||||||
seq2  AAGAGATACATGGTAAACTGGAGAAAGGG-ATAGA--GAGAAGGGAATGG  947

seq1  ACAGGCAGGATG  961
      ||||||||||||
seq2  ACAGGCAGGATG  959

seq1: chr5_79398331_79399511
seq2: B6Ng01-134K20.g_68_1242 (reverse)

seq1  TTGTCTGAACTAAAACCT-CACAGCAGATGGAAAAGTGAAAGCCAATATC  49
      ||||||||||  |||||| ||| ||||   |||| ||| ||||| |||| 
seq2  TTGTCTGAACATAAACCTCCACGGCAGGATGAAAGGTG-AAGCC-ATATT  48

seq1  TTATTTGAAGATTACCTGAGGAGGAAAGTCCCTTAAATTTTCTTTTTATT  99
       ||||||||||||||||||||| | ||||||||||||||||| |||||||
seq2  CTATTTGAAGATTACCTGAGGAAG-AAGTCCCTTAAATTTTC-TTTTATT  96

seq1  TGCTGGCTGAGAACTTTT-CCTCTAGTCAGCTTCCCAACAGTTTCCTTCC  148
      |||||||||||||||||| |||||||||||||| ||||||||||||||||
seq2  TGCTGGCTGAGAACTTTTCCCTCTAGTCAGCTT-CCAACAGTTTCCTTCC  145

seq1  TGGCATCTTATTGCAGAACTTCCAATATGCCAATGTCTTTAAATCTTAGG  198
      ||||||||||||||||||||||| |||||||||||||||| |||||||||
seq2  TGGCATCTTATTGCAGAACTTCC-ATATGCCAATGTCTTT-AATCTTAGG  193

seq1  TCAGAATTCTTAAAAAGAGTCAGTTGACAAATGATGGAGCAGGCATGAGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATTCTTAAAAAGAGTCAGTTGACAAATGATGGAGCAGGCATGAGG  243

seq1  CTAGAGTAACTTATTTTACTCTTTAATATTTACCCTTTATTTCTGGAACT  298
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTAGAGTAACTTA-TTTACTCTTTAATATTTACCCTTTATTTCTGGAACT  292

seq1  CATCTTTCCCTATCAAGTCTTTCTATATTAGTGGCTTTGGTGATTACACT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTCCCTATCAAGTCTTTCTATATTAGTGGCTTTGGTGATTACACT  342

seq1  AATGATTTATCAGCCAAAGCTATAAATTTCTAGAGGGGGAATAGTCTTTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTTATCAGCCAAAGCTATAAATTTCTAGAGGGGGAATAGTCTTTG  392

seq1  AATTGTACTAAGTGCCACTGTTCATTATTCAACCCAAATATTTGTCATTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTACTAAGTGCCACTGTTCATTATTCAACCCAAATATTTGTCATTT  442

seq1  AAAAGTTGATTCTTGCATAAAATACATTAGTCATTTATTAAAATTCATTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTGATTCTTGCATAAAATACATTAGTCATTTATTAAAATTCATTA  492

seq1  TTCTTTCTTTTAATCCTTGAGCATAAAAGCCATGCCCTTTACACGCTGTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTTAATCCTTGAGCATAAAAGCCATGCCCTTTACACGCTGTT  542

seq1  CATAGAAGAGACTATCCTAAATGAACAACTAACTATAATAACAGAAGGAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAAGAGACTATCCTAAATGAACAACTAACTATAATAACAGAAGGAA  592

seq1  GTTAAAGAAATGTGCTTGTGTTGGGAGTTAAGGGCTCATGTTACCCTTCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGAAATGTGCTTGTGTTGGGAGTTAAGGGCTCATGTTACCCTTCA  642

seq1  AAATCTCATATTTCTGTTGTCATGAATTACTGTTGGGTGACTCATAAATG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCATATTTCTGTTGTCATGAATTACTGTTGGGTGACTCATAAATG  692

seq1  CCTGTAGCTCTATGGCCAGGAGACCTTGATCCTCTGACTTCAATGTGTGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAGCTCTATGGCCAGGAGACCTTGATCCTCTGACTTCAATGTGTGC  742

seq1  CTTCATTCTAATGCATATCCCCCTACCTGGGTGTGTTCACATACACAAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTCTAATGCATATCCCCCTACCTGGGTGTGTTCACATACACAAAA  792

seq1  TTTAAAATAATGAAAATATTGAAACATCTTAAATTTAAGCAAAATCTACC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATAATGAAAATATTGAAACATCTTAAATTTAAGCAAAATCTACC  842

seq1  ATGGTTTTTCAGTTATTAGTATACAAACTTTTGTGAATTAAACACAAAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTTTCAGTTATTAGTATACAAACTTTTGTGAATTAAACACAAAAA  892

seq1  AAGCAATTTAGTGCTTAATCTGCCTCATAAATAAATAAGGTGCTTCCTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATTTAGTGCTTAATCTGCCTCATAAATAAATAAGGTGCTTCCTTT  942

seq1  CAGAGATCATCCAAAAGAAAACCTGTTCATTCCTACTGCTTGGACTTCCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATCATCCAAAAGAAAACCTGTTCATTCCTACTGCTTGGACTTCCA  992

seq1  ATGCCCGTGCATCTGTTCTTTGTCATTCCCTGTACTAGCAACGGCACAGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCGTGCATCTGTTCTTTGTCATTCCCTGTACTAGCAACGGCACAGT  1042

seq1  GTTAAATGTCTTTCATGAGTAGATAATAATATAGGAATCACTGAATTCAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATGTCTTTCATGAGTAGATAATAATATAGGAATCACTGAATTCAT  1092

seq1  TTTTTTCAGAAACCACTTAGCTATCCATTTCCTATAGAACACGAAAGTGT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCAGAAACCACTTAGCTATCCATTTCCTATAGAACACGAAAGTGT  1142

seq1  TTCCTGTGACAAATTGTCACTTTGTTAGAATTC  1181
      |||||||||||||||||||||||||||||||||
seq2  TTCCTGTGACAAATTGTCACTTTGTTAGAATTC  1175