BAC Information

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BAC

Clone NameB6Ng01-135A17
Chromosome5 (Build37)
Map Location 101,021,700 - 101,203,195
singlet/doubletdoublet
Overlap geneCoq2, Hpse, Hel308
Upstream geneA930011G23Rik, LOC100040738, LOC666364, LOC100040763, LOC100040774, Hnrpd, 4930524J08Rik, Hnrpdl, Enoph1, BC062109, LOC666417, Sec31a, LOC100041797, Lin54, Cops4, Plac8
Downstream geneMrps18c, Ccdc98, A230097K15Rik, LOC100041888, LOC100040902, Cycs-ps2, LOC100040920, Nkx6-1, Cds1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135A17.bB6Ng01-135A17.g
ACCDH935190DH935191
length1,0281,073
definitionDH935190|Mus musculus domesticus DNA, BAC clone: B6Ng01-135A17, 5' end.DH935191|Mus musculus domesticus DNA, BAC clone: B6Ng01-135A17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,021,700 - 101,022,590)(101,202,117 - 101,203,195)
sequence
gaattccatcttctactggatgaataagatcaaagtgaaaccttcgggcc
tcgttcttagggtttctgacattttgtagctgctgtgtggagagaacaag
cctccctgttatgtgcacttctgtcaataaatcttctctagagttttgag
gctgtcattctatcctaccatctgatgtggctgacagaaattctattatt
ttctctccagagctgcgatcagacgcaagggcctcgggcattgccctgga
tgtttttgatgttctagctgtgaatccttcccccaacacataccctttca
cgatgctgggccccctcaaggatctttgcagtcagactcatgtcccttca
tcttgagggataagctatttctttcagttactctgattcaagttgtgctg
gatagttttatgtcaatttgacacaagctaaagaggaggtagcctcaatt
aagaaagtgtctccaaagatgagcccgaagggcatttttttaaattggtg
attgttgggggagggcatagccccttctggatggttccaaccttgggttg
tagttctggattctatacataaaagcagggagagcaatccagatggagca
ggccactaaggggcaccctccatgacctctgcatcaactcctgtctccag
gttccagccttacttgagttcctatcctgacttctgtagtgagaattttg
gtttcttgaaaaacccggtgacattatgtgagtatgtttttgtttttatc
ccagagtggagtaagaggctgctttacagcagtgattgtgatttgcctca
tgcacttgcaggggtgtgattttttttctccagctgcagacagtttaatt
ctggagaatctggagaagcgttcaaacaggagagccccaagaggggctgg
aagatggctgctattcccttcttgccacttctgtttgctgttgttgtggt
tggtagggggtgtaagcaaagagataagttaagggatatcctgatgacaa
agatcacattattctcaagaactgaagg
gaattctttcagatcgcagcaagtcttggtgacatatatcagtttatgag
tggtacattttttggtgttcagcaaaagattttattgaaagaaaaaagtc
tctgggaaataactgttgacgctcttgaacacctgacagagaaaggactt
ctacagaaagacagctgtggcgacaatgaggggttagagtgtcacttccg
gattacgaaactgggccaagcttcttttaagggtaagtttgcctaaatct
cagtattttctaaggggatgtattggaaataatagaagttaagtgatttt
ctttctttaaattggatttgtgatttcatattagaagcgttactcttacg
agctatgtccgctttcagaagttgaatagacttagaattgtaagcaagtg
cacactagagggaagctggccttgccgcctccccactccgaccctcagca
gcagcacagagcctggaataacgcctatctgtgtgttttacttcaactcg
caggccatgctgtagacacattcaaattttgttttaaacaaatatttact
gttgtatttctggagcttgctttttgcttaatctatagattgtatctgaa
cagagaattaattaaatttgctttttttttttaagacagggtttttcttc
gtagccttggttatccaggaaggatttatttcttaatgagtaatttactc
attgaaaactatctgctctttaaaaacaaaaacaaaaccttaggttaggg
tgacgtcttattcagtaaagtcagtaaaaccataaagagcaacctgagtt
cagactcccagcacccacataagaagccaggcgtggctgagcatggcggc
atgtgtctaccatcccagcaggaaggagttggaggcagctgggcccgtgg
agctcgctgatcagctgcctagccaaatagtgagtccttggttcaggcaa
agaattacgagaggagtgacatcctcttgtaacacgtgcgtgcgcacgtg
taccccacacacatacactcgggatatgtaagcagaagccacacacctgg
tccagtccatctctgggagcctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_101021700_101022590
seq2: B6Ng01-135A17.b_40_931

seq1  GAATTCCATCTTCTACTGGATGAATAAGATCAAAGTGAAACCTTCGGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTTCTACTGGATGAATAAGATCAAAGTGAAACCTTCGGGCC  50

seq1  TCGTTCTTAGGGTTTCTGACATTTTGTAGCTGCTGTGTGGAGAGAACAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTCTTAGGGTTTCTGACATTTTGTAGCTGCTGTGTGGAGAGAACAAG  100

seq1  CCTCCCTGTTATGTGCACTTCTGTCAATAAATCTTCTCTAGAGTTTTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTGTTATGTGCACTTCTGTCAATAAATCTTCTCTAGAGTTTTGAG  150

seq1  GCTGTCATTCTATCCTACCATCTGATGTGGCTGACAGAAATTCTATTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCATTCTATCCTACCATCTGATGTGGCTGACAGAAATTCTATTATT  200

seq1  TTCTCTCCAGAGCTGCGATCAGACGCAAGGGCCTCGGGCATTGCCCTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCCAGAGCTGCGATCAGACGCAAGGGCCTCGGGCATTGCCCTGGA  250

seq1  TGTTTTTGATGTTCTAGCTGTGAATCCTTCCCCCAACACATACCCTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGATGTTCTAGCTGTGAATCCTTCCCCCAACACATACCCTTTCA  300

seq1  CGATGCTGGGCCCCCTCAAGGATCTTTGCAGTCAGACTCATGTCCCTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGCTGGGCCCCCTCAAGGATCTTTGCAGTCAGACTCATGTCCCTTCA  350

seq1  TCTTGAGGGATAAGCTATTTCTTTCAGTTACTCTGATTCAAGTTGTGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGGGATAAGCTATTTCTTTCAGTTACTCTGATTCAAGTTGTGCTG  400

seq1  GATAGTTTTATGTCAATTTGACACAAGCTAAAGAGGAGGTAGCCTCAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTTTTATGTCAATTTGACACAAGCTAAAGAGGAGGTAGCCTCAATT  450

seq1  AAGAAAGTGTCTCCAAAGATGAGCCCGAAGGGCATTTTTTTAAATTGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGTGTCTCCAAAGATGAGCCCGAAGGGCATTTTTTTAAATTGGTG  500

seq1  ATTGTTGGGGGAGGGCATAGCCCCTTCTGGATGGTTCCAACCTTGGGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGGGGGAGGGCATAGCCCCTTCTGGATGGTTCCAACCTTGGGTTG  550

seq1  TAGTTCTGGATTCTATACATAAAAGCAGGGAGAGCAATCCAGATGGAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTGGATTCTATACATAAAAGCAGGGAGAGCAATCCAGATGGAGCA  600

seq1  GGCCACTAAGGGGCACCCTCCATGACCTCTGCATCAACTCCTGTCTCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACTAAGGGGCACCCTCCATGACCTCTGCATCAACTCCTGTCTCCAG  650

seq1  GTTCCAGCCTTACTTGAGTTCCTATCCTGACTTCTGTAGTGAGAATTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGCCTTACTTGAGTTCCTATCCTGACTTCTGTAGTGAGAATTTTG  700

seq1  GTTTCTTGAAAAACCCGGTGACATTATGTGAGTATGTTTTTGTTTTAATC  750
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTTTCTTGAAAAACCCGGTGACATTATGTGAGTATGTTTTTGTTTTTATC  750

seq1  CCAGAGTGGAGTAAGAGGCTGCTTTACAGCAGGTGATTGTGATTTGCCTC  800
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCAGAGTGGAGTAAGAGGCTGCTTTACAGCA-GTGATTGTGATTTGCCTC  799

seq1  ATGCACTTGCAGGGGTGTGA-TTTTTTTCTCCAGCTGCAGACAGTTTAAT  849
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATGCACTTGCAGGGGTGTGATTTTTTTTCTCCAGCTGCAGACAGTTTAAT  849

seq1  TCTGGAGAATCTGGAG-AGCGTTCAAACAGGAGAGCCCCAAGA  891
      |||||||||||||||| ||||||||||||||||||||||||||
seq2  TCTGGAGAATCTGGAGAAGCGTTCAAACAGGAGAGCCCCAAGA  892

seq1: chr5_101202117_101203195
seq2: B6Ng01-135A17.g_68_1140 (reverse)

seq1  GAGGCTCCCCAGGAGTGGACTGGGACAGGTGTGTGGGCTTCTGCTAACAT  50
      |||||| |||||   ||||||||  ||||||||| |||||||||| ||||
seq2  GAGGCT-CCCAGAGATGGACTGGACCAGGTGTGT-GGCTTCTGCTTACAT  48

seq1  AATCCCGAGTGTATGTGTGTGTGTGTACACGTGCGCACGCACGTGTGTAC  100
       |||||||||||||||||||| | |||||||||||||||||||||| |||
seq2  -ATCCCGAGTGTATGTGTGTG-GGGTACACGTGCGCACGCACGTGT-TAC  95

seq1  AGGAGGATGTCACTCCTCTCGTTAATTCTTTGGCTGAACCAAGGACTCAC  150
      | ||||||||||||||||||| |||||||||| |||||||||||||||||
seq2  AAGAGGATGTCACTCCTCTCG-TAATTCTTTGCCTGAACCAAGGACTCAC  144

seq1  TATTTGGCTAGGCAGCTGATCAGCGAGCTCCACGGGCCCAGCTGCCTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGCTAGGCAGCTGATCAGCGAGCTCCACGGGCCCAGCTGCCTCCA  194

seq1  CCTCCTTCCTGCTGGGATGGTAGACACATGCCGCCATGCTCAGCCACGCC  250
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTCCTGCTGGGATGGTAGACACATGCCGCCATGCTCAGCCACGCC  244

seq1  TGGCTTCTTATGTGGGTGCTGGGAGTCTGAACTCAGGTTGCTCTTTATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCTTATGTGGGTGCTGGGAGTCTGAACTCAGGTTGCTCTTTATGG  294

seq1  TTTTACTGACTTTACTGAATAAGACGTCACCCTAACCTAAGGTTTTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTGACTTTACTGAATAAGACGTCACCCTAACCTAAGGTTTTGTTT  344

seq1  TTGTTTTTAAAGAGCAGATAGTTTTCAATGAGTAAATTACTCATTAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTAAAGAGCAGATAGTTTTCAATGAGTAAATTACTCATTAAGAA  394

seq1  ATAAATCCTTCCTGGATAACCAAGGCTACGAAGAAAAACCCTGTCTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCCTTCCTGGATAACCAAGGCTACGAAGAAAAACCCTGTCTTAAA  444

seq1  AAAAAAAAGCAAATTTAATTAATTCTCTGTTCAGATACAATCTATAGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGCAAATTTAATTAATTCTCTGTTCAGATACAATCTATAGATT  494

seq1  AAGCAAAAAGCAAGCTCCAGAAATACAACAGTAAATATTTGTTTAAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAAAGCAAGCTCCAGAAATACAACAGTAAATATTTGTTTAAAACA  544

seq1  AAATTTGAATGTGTCTACAGCATGGCCTGCGAGTTGAAGTAAAACACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGAATGTGTCTACAGCATGGCCTGCGAGTTGAAGTAAAACACACA  594

seq1  GATAGGCGTTATTCCAGGCTCTGTGCTGCTGCTGAGGGTCGGAGTGGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGCGTTATTCCAGGCTCTGTGCTGCTGCTGAGGGTCGGAGTGGGGA  644

seq1  GGCGGCAAGGCCAGCTTCCCTCTAGTGTGCACTTGCTTACAATTCTAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGCAAGGCCAGCTTCCCTCTAGTGTGCACTTGCTTACAATTCTAAGT  694

seq1  CTATTCAACTTCTGAAAGCGGACATAGCTCGTAAGAGTAACGCTTCTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCAACTTCTGAAAGCGGACATAGCTCGTAAGAGTAACGCTTCTAAT  744

seq1  ATGAAATCACAAATCCAATTTAAAGAAAGAAAATCACTTAACTTCTATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATCACAAATCCAATTTAAAGAAAGAAAATCACTTAACTTCTATTA  794

seq1  TTTCCAATACATCCCCTTAGAAAATACTGAGATTTAGGCAAACTTACCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAATACATCCCCTTAGAAAATACTGAGATTTAGGCAAACTTACCCT  844

seq1  TAAAAGAAGCTTGGCCCAGTTTCGTAATCCGGAAGTGACACTCTAACCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAAGCTTGGCCCAGTTTCGTAATCCGGAAGTGACACTCTAACCCC  894

seq1  TCATTGTCGCCACAGCTGTCTTTCTGTAGAAGTCCTTTCTCTGTCAGGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTCGCCACAGCTGTCTTTCTGTAGAAGTCCTTTCTCTGTCAGGTG  944

seq1  TTCAAGAGCGTCAACAGTTATTTCCCAGAGACTTTTTTCTTTCAATAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGAGCGTCAACAGTTATTTCCCAGAGACTTTTTTCTTTCAATAAAA  994

seq1  TCTTTTGCTGAACACCAAAAAATGTACCACTCATAAACTGATATATGTCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGCTGAACACCAAAAAATGTACCACTCATAAACTGATATATGTCA  1044

seq1  CCAAGACTTGCTGCGATCTGAAAGAATTC  1079
      |||||||||||||||||||||||||||||
seq2  CCAAGACTTGCTGCGATCTGAAAGAATTC  1073