BAC Information

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BAC

Clone NameB6Ng01-135B18
Chromosome5 (Build37)
Map Location 39,474,606 - 39,589,326
singlet/doubletdoublet
Overlap genenone
Upstream geneStx18, Nsg1, LOC100040397, Zfp509, Lyar, Tmem128, Otop1, Drd5, 4930487D11Rik, Slc2a9, Wdr1, 4930421P07Rik, 6820424L24Rik, Clnk
Downstream geneLOC384174, Hs3st1, EG665839
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135B18.bB6Ng01-135B18.g
ACCDH935234DH935235
length1,0231,090
definitionDH935234|Mus musculus domesticus DNA, BAC clone: B6Ng01-135B18, 5' end.DH935235|Mus musculus domesticus DNA, BAC clone: B6Ng01-135B18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,588,796 - 39,589,326)(39,474,606 - 39,475,697)
sequence
gaattccaacattgaaacaggagattcagccatgagaataaggagctgag
tagtgatgaaggaaaagcttgcccagagatgttgaagcaatggaagagag
aagcaattgaccagtgggttaaggagaacgagatgatgttcagaattcag
gtggagcaaatcatagggaatttctcaactctccacagtcagcttgaact
ttgttctccacaagatgagaagatacctacttaagaagtagactgattgg
aactggctttttagtagtcactataaagagaatatcaagagtagactaga
gatcttcagctccagacagccggccaccttcctggtgagagcacgggggt
ctgcccggcctgagaggtttgtggcacaggcgccggcgggagccttcttg
gctccgggactccgcggagggcaggctgcacgggtgaccgtgtggaatac
agagtgccagccgtttctgggacgggcgagagtcgcagagcttctgggtg
gcgccatcttcaactccagacaaccagccaccttcccggcaagagccaca
gagcttctgaggcagcgccatcctcagctccagacggccggcctccttcc
ggacaagagccacagagcttctcaggcggcgacatcttcgactccagaca
actggccaccttcctggccaaagcaacacagcttctgggaaagatcctgt
ttggggccttcaccttcagccaggaggaggtccaaacaccagataactgt
acaccttccctgaaagaggagagcttgcctacagagactgctctgaccac
tgaaactcagagaagagagcttgtctcccacgtatgctgatagagggtaa
caaaatcaacagaggaacaatctcttaacaaagacaactataacaactaa
ccccagagattgccagatggcaaaaggtaaacgtaagaatcctactaaca
gaagccaggacactcacatcatcagacccagaacgcccacttcgcccaat
ccaggacacctaacacacctgaa
gaattcataatcctcaaggaggctgctttgaatgttccaacatgaaattg
actttaaaatttgatttgggcaaggggcaggaaggcaacaccttaaatcc
cgagataccacagaaattttgcattaattagtctgcttaattttcagaga
gacttagacatgggcaataatgtcctcattttaccaaggaacatagatgg
gtgttcttgttttgcttattgatccaacatcaagtctactgtccagacat
gggtgggaggctcaagaacaatggcaaaatttccattacagaccaggttt
tctgaactctccacttgacccaggcttctacctgaacttgtgaagctctg
ctattgactctgctaactgtaacccagcagaacctcagctggagtctgtg
taaacaacatcttccaatagagtctgtcaacttctgtgcaagagaagaga
ctgtttaaaaaagtattccccacttgcttttgtttgtttgtttgtttgtt
tgttttttctttttggttttttcgagacagggtttctctgtatagccctg
gctgtcctggagctcactttgtagaccaggctggcctcgaactcagacat
ctgcctgcctctgcctcccgagtgctgggattaaaggcgtgcgccaccac
gcccgcccggcgcttttttttttgaaaagtttctttttctcctaacttcc
tgcttactaattaacattcctttggaggattataaagggggggataccat
ggcccatgaagctccccgacacagtatgaagttgagatccatgtttcggc
ttcattccagttaacttaggaaaaagaaaacacaatcaatgattgacaag
ccaattcgtcagaattatttaaaatattgatagcttttatgtgtgtgtat
tttgcccaaacttcagagtgttagcatttcacaagcaactggggacttca
atgttatcatctggagggcttgaggcagctgagtcctactcattctgtca
gaaagaaagaatgtctccatgtccccacaaggaacctcacctattgaagc
taatagggcagccaattcttttttgggaaaaaaaaaatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_39588796_39589326
seq2: B6Ng01-135B18.b_47_577 (reverse)

seq1  GTGGCTGGTTGTCTGGAGTTGAAGATGGCGCCACCCAGAAGCTCTGCGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGGTTGTCTGGAGTTGAAGATGGCGCCACCCAGAAGCTCTGCGAC  50

seq1  TCTCGCCCGTCCCAGAAACGGCTGGCACTCTGTATTCCACACGGTCACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGCCCGTCCCAGAAACGGCTGGCACTCTGTATTCCACACGGTCACCC  100

seq1  GTGCAGCCTGCCCTCCGCGGAGTCCCGGAGCCAAGAAGGCTCCCGCCGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGCCTGCCCTCCGCGGAGTCCCGGAGCCAAGAAGGCTCCCGCCGGC  150

seq1  GCCTGTGCCACAAACCTCTCAGGCCGGGCAGACCCCCGTGCTCTCACCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGCCACAAACCTCTCAGGCCGGGCAGACCCCCGTGCTCTCACCAG  200

seq1  GAAGGTGGCCGGCTGTCTGGAGCTGAAGATCTCTAGTCTACTCTTGATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGGCCGGCTGTCTGGAGCTGAAGATCTCTAGTCTACTCTTGATAT  250

seq1  TCTCTTTATAGTGACTACTAAAAAGCCAGTTCCAATCAGTCTACTTCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTATAGTGACTACTAAAAAGCCAGTTCCAATCAGTCTACTTCTTA  300

seq1  AGTAGGTATCTTCTCATCTTGTGGAGAACAAAGTTCAAGCTGACTGTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGTATCTTCTCATCTTGTGGAGAACAAAGTTCAAGCTGACTGTGGA  350

seq1  GAGTTGAGAAATTCCCTATGATTTGCTCCACCTGAATTCTGAACATCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGAGAAATTCCCTATGATTTGCTCCACCTGAATTCTGAACATCATC  400

seq1  TCGTTCTCCTTAACCCACTGGTCAATTGCTTCTCTCTTCCATTGCTTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTCTCCTTAACCCACTGGTCAATTGCTTCTCTCTTCCATTGCTTCAA  450

seq1  CATCTCTGGGCAAGCTTTTCCTTCATCACTACTCAGCTCCTTATTCTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTGGGCAAGCTTTTCCTTCATCACTACTCAGCTCCTTATTCTCAT  500

seq1  GGCTGAATCTCCTGTTTCAATGTTGGAATTC  531
      |||||||||||||||||||||||||||||||
seq2  GGCTGAATCTCCTGTTTCAATGTTGGAATTC  531

seq1: chr5_39474606_39475697
seq2: B6Ng01-135B18.g_68_1157

seq1  GAATTCATAATCCTCAAGGAGGCTGCTTTGAATGTTCCAACATGAAATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAATCCTCAAGGAGGCTGCTTTGAATGTTCCAACATGAAATTG  50

seq1  ACTTTAAAATTTGATTTGGGCAAGGGGCAGGAAGGCAACACCTTAAATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAAATTTGATTTGGGCAAGGGGCAGGAAGGCAACACCTTAAATCC  100

seq1  CGAGATACCACAGAAATTTTGCATTAATTAGTCTGCTTAATTTTCAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGATACCACAGAAATTTTGCATTAATTAGTCTGCTTAATTTTCAGAGA  150

seq1  GACTTAGACATGGGCAATAATGTCCTCATTTTACCAAGGAACATAGATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAGACATGGGCAATAATGTCCTCATTTTACCAAGGAACATAGATGG  200

seq1  GTGTTCTTGTTTTGCTTATTGATCCAACATCAAGTCTACTGTCCAGACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTTGTTTTGCTTATTGATCCAACATCAAGTCTACTGTCCAGACAT  250

seq1  GGGTGGGAGGCTCAAGAACAATGGCAAAATTTCCATTACAGACCAGGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGAGGCTCAAGAACAATGGCAAAATTTCCATTACAGACCAGGTTT  300

seq1  TCTGAACTCTCCACTTGACCCAGGCTTCTACCTGAACTTGTGAAGCTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACTCTCCACTTGACCCAGGCTTCTACCTGAACTTGTGAAGCTCTG  350

seq1  CTATTGACTCTGCTAACTGTAACCCAGCAGAACCTCAGCTGGAGTCTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGACTCTGCTAACTGTAACCCAGCAGAACCTCAGCTGGAGTCTGTG  400

seq1  TAAACAACATCTTCCAATAGAGTCTGTCAACTTCTGTGCAAGAGAAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAACATCTTCCAATAGAGTCTGTCAACTTCTGTGCAAGAGAAGAGA  450

seq1  CTGTTTAAAAAAGTATTCCCCACTTGCTTTTGTTTGTTTGTTTGTTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTAAAAAAGTATTCCCCACTTGCTTTTGTTTGTTTGTTTGTTTGTT  500

seq1  TGTTTTTTCTTTTTGGTTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTCTTTTTGGTTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTG  550

seq1  GCTGTCCTGGAGCTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCTGGAGCTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGACAT  600

seq1  CTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCAC  650

seq1  GCCCGCCCGGCGCTTTTTTTTTTGAAAAGTTTCTTTTTCTCCTAACTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGCCCGGCGCTTTTTTTTTTGAAAAGTTTCTTTTTCTCCTAACTTCC  700

seq1  TGCTTACTAATTAACATTCCTTTGGAGGATTATAAAGGGGGGGATACCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACTAATTAACATTCCTTTGGAGGATTATAAAGGGGGGGATACCAT  750

seq1  GGCCCATGAAGCTCCCCGACACAGTATGAAGTTGAGATCCATG-TTCGGC  799
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGCCCATGAAGCTCCCCGACACAGTATGAAGTTGAGATCCATGTTTCGGC  800

seq1  TTCATTCCAGTTAACTTAGGAAAAAGAAAACACAATCAATGATTGACAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTCATTCCAGTTAACTTAGGAAAAAGAAAACACAATCAATGATTGAC-AA  849

seq1  GCCAATTCGTCAGAATTATTTTAAAATATTGATAGCTTTTATGTGTGTGT  899
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCCAATTCGTCAGAATTA-TTTAAAATATTGATAGCTTTTATGTGTGTGT  898

seq1  ATTTTGCCCAAACTTCAGAGTGTTAGCATTTCACAAGCAACTGGGGACTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCCCAAACTTCAGAGTGTTAGCATTTCACAAGCAACTGGGGACTT  948

seq1  CAATGTTATCATCT-GAGGGCTTGAGGCCAGCTGAGTCCTACTTCATTCT  998
      |||||||||||||| |||||||||||| |||||||||||||| |||||||
seq2  CAATGTTATCATCTGGAGGGCTTGAGG-CAGCTGAGTCCTAC-TCATTCT  996

seq1  GTCAGAAAGAAAGAATGTCTCAGTGT-CACACAAAGAAACTCA-CTATTA  1046
      |||||||||||||||||||||  ||| | ||||| ||| |||| ||||| 
seq2  GTCAGAAAGAAAGAATGTCTCCATGTCCCCACAAGGAACCTCACCTATTG  1046

seq1  AGGCAAAAATAGGCAGGGCAATTCTTTTTTGGGAAAAAAAAAATGT  1092
      | ||   ||||||   | ||||||||||||||||||||||||||||
seq2  AAGC--TAATAGGGCAGCCAATTCTTTTTTGGGAAAAAAAAAATGT  1090