BAC Information

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BAC

Clone NameB6Ng01-135K20
Chromosome5 (Build37)
Map Location 117,053,046 - 117,204,604
singlet/doubletdoublet
Overlap geneLOC433943, Gm1684
Upstream geneGcn1l1, LOC100042199, Rab35, Ccdc64, LOC665032, Cit, Prkab1, LOC545798, Ccdc60, 4930562A09Rik, Hspb8, 1500001A10Rik
Downstream geneLOC665073, Suds3, Taok3, Pebp1, LOC100042313, LOC100039359, BC023744, LOC667175, Wsb2, Rfc5, Ksr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135K20.bB6Ng01-135K20.g
ACCDH935654DH935655
length90876
definitionDH935654|Mus musculus domesticus DNA, BAC clone: B6Ng01-135K20, 5' end.DH935655|Mus musculus domesticus DNA, BAC clone: B6Ng01-135K20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,204,515 - 117,204,604)(117,053,046 - 117,053,967)
sequence
gaattcatctcagtaattctctggttgcatctcaagcttgggattttttt
aagtacctggggtgaggggagggggcaggggtggggtgga
gaattcagttttgcatttaaaagcttccttccttccttcttccttccttc
cttcttttctttctttctttctttctttctttctttctttctttctttct
ttctttctttctttctttctttctttctttcttccttccttccttccttc
cttccttccttccttccttccttcctctctctctctctctctctctctct
ctctcttcctttctttctagttcatccttggctcccctctgtgtgtgtag
ctaggggaggttgtgtgtgtacatatttggcatggcctcaagtgcttttt
gctattatggacagactgcagtttctgaatgcagctagcttggtcatgtg
tgctatttcctctccactgaaaagaatacagaattcactcccagaatgct
ttgaggcagaagacaatggcaactgacctttggtttagggaggaaaaaag
aaagaatgcagaatctcaaactgtggctgtatgtatgccaggtacacagg
gaagatcttgggacagaattgaactcctgtcctctggagccagagaattg
tgtggctggttttctgcatcagacctgtcctcctccttgtgcctggtgga
cactgcagatgtaattaccaagcaatcaatagtcatgttgtggtctgagc
atccttagtaatgcatcgttgctcctggaactaggttgtgtcacatcaga
acagaagcgctgcaggtccagtcaccagcagctcagatatgtcaggcatt
atctaccagaacaagctctacgacagaatctgttcttctctctgttcctt
gagcaagctcagctagaagttcagcactgagtgagtcagagagtctgtct
gtcaagttacatcctgactttctttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_117204515_117204604
seq2: B6Ng01-135K20.b_44_133 (reverse)

seq1  TCCACCCCACCCCTGCCCCCTCCCCTCACCCCAGGTACTTAAAAAAATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCCACCCCTGCCCCCTCCCCTCACCCCAGGTACTTAAAAAAATCC  50

seq1  CAAGCTTGAGATGCAACCAGAGAATTACTGAGATGAATTC  90
      ||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTGAGATGCAACCAGAGAATTACTGAGATGAATTC  90

seq1: chr5_117053046_117053967
seq2: B6Ng01-135K20.g_70_945

seq1  GAATTCAGTTTTGCATTTAAAAGCTTCCTTCCTTCCTTCTTCCTTCCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTTGCATTTAAAAGCTTCCTTCCTTCCTTCTTCCTTCCTTC  50

seq1  CTTCT----TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  96
      |||||    |||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  100

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTTCCTTCCTTCCTTC  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTTCCTTCCTTCCTTC  150

seq1  CTTCCTTCCTTCCTTCCTTCCTTCCTCTCTCTCTCTCTCTCTCTCTCTCT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCCTTCCTTCCTTCCTTCCTCTCTCTCTCTCTCTCTCTCTCTCT  200

seq1  CTCTCTTCCTTTCTTTCTAGTTCATCCTTGGCTCCCCTCTGTGTGTGTAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTCCTTTCTTTCTAGTTCATCCTTGGCTCCCCTCTGTGTGTGTAG  250

seq1  CTAGGGGAGGTTGTGTGTGTACATATTTGGCATGGCCTCAAGTGCTTTTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGGAGGTTGTGTGTGTACATATTTGGCATGGCCTCAAGTGCTTTTT  300

seq1  GCTATTATGGACAGACTGCAGTTTCTGAATGCAGCTAGCTTGGTCATGTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTATGGACAGACTGCAGTTTCTGAATGCAGCTAGCTTGGTCATGTG  350

seq1  TGCTATTTCCTCTCCACTGAAAAGAATACAGAATTCACTCCCAGAATGCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTTCCTCTCCACTGAAAAGAATACAGAATTCACTCCCAGAATGCT  400

seq1  TTGAGGCAGAAGACAATGGCAACTGACCTTTGGTTTAGGGAGGAAAAAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTGAGGCAGAAGACAATGGCAACTGACCTTTGGTTTAGGGAGGAAAAAA-  449

seq1  GAAAAGAATGCAGAAATCTCAAACTGTGGCTGTATGTATGCCCAGGTACA  496
        ||||||||||| |||||||||||||||||||||||||| |||||||||
seq2  -GAAAGAATGCAG-AATCTCAAACTGTGGCTGTATGTATG-CCAGGTACA  496

seq1  CAGGGAAGATCTTGGGGACAGAATTGAAACTCCTGTCCTCTGGAGCCAGA  546
      ||||||||||||| |||||||||||| |||||||||||||||||||||||
seq2  CAGGGAAGATCTT-GGGACAGAATTG-AACTCCTGTCCTCTGGAGCCAGA  544

seq1  GAAATTTGTGTGGCTGGTTTTTTCTGCATCAGAACCTGTCCTCCCTCCTT  596
      |||  ||||||||||||  ||||||||||||| ||||||||| |||||||
seq2  GAA--TTGTGTGGCTGG--TTTTCTGCATCAG-ACCTGTCCT-CCTCCTT  588

seq1  GTGCCTGGGTTGGACACTGCAGATGTAATTACCAAGCAAATCAATAGTCC  646
      ||||||||  ||||||||||||||||||||||||||| |||||||||| |
seq2  GTGCCTGG--TGGACACTGCAGATGTAATTACCAAGC-AATCAATAGT-C  634

seq1  ATGTTGTGGTCTGAGCATCCTTAGTAATGCATCGTTTTGCTCCTGGGAAC  696
      ||||||||||||||||||||||||||||||||||  |||||||| |||||
seq2  ATGTTGTGGTCTGAGCATCCTTAGTAATGCATCG--TTGCTCCT-GGAAC  681

seq1  TTAGTTTGTGTCACATTCAGAACAGAAGCGCTGCAGGTCCCAGTCCACCC  746
       ||| |||||||||| |||||||||||||||||||||| ||||||   ||
seq2  -TAGGTTGTGTCACA-TCAGAACAGAAGCGCTGCAGGT-CCAGTC--ACC  726

seq1  AGCAGCTCAGAATAATGTCCAGAGCATTTAATCTTTCCCGTGAACAAGCT  796
      |||||||||||   |||| ||| |||||  ||||    |  |||||||||
seq2  AGCAGCTCAGA--TATGT-CAG-GCATT--ATCT---ACCAGAACAAGCT  767

seq1  CTTTACGAACAGAATCCTGTTCGTTCTCTCTGTTTCCCTTTGAAGCAGGC  846
      |  |||| ||||||| |||||| |||||||||||  ||||   |||| ||
seq2  C--TACG-ACAGAAT-CTGTTC-TTCTCTCTGTT--CCTT--GAGCAAGC  808

seq1  TCAGCTAGAAG-TCAGGGGACTGAAGTGAGGTCAGAGAGCCGGCCTGTCA  895
      ||||||||||| |||  | |||| ||||| ||||||||| | | ||||||
seq2  TCAGCTAGAAGTTCA--GCACTG-AGTGA-GTCAGAGAGTCTGTCTGTCA  854

seq1  AGGGTACCTTTCTCTGACTTTTCTTTG  922
      | | ||| |    ||||| ||||||||
seq2  A-GTTACAT---CCTGAC-TTTCTTTG  876