BAC Information

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BAC

Clone NameB6Ng01-136A14
Chromosome5 (Build37)
Map Location 49,292,090 - 49,438,133
singlet/doubletdoublet
Overlap geneLOC100041668
Upstream geneLOC100040876, Slit2, 4933428G09Rik, Kcnip4
Downstream geneLOC100041659, EG433885, LOC666223, Gpr125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136A14.bB6Ng01-136A14.g
ACCDH935924DH935925
length9881,166
definitionDH935924|Mus musculus domesticus DNA, BAC clone: B6Ng01-136A14, 5' end.DH935925|Mus musculus domesticus DNA, BAC clone: B6Ng01-136A14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,292,090 - 49,292,731)(49,436,947 - 49,438,133)
sequence
gaattcacaagaaacaacacagaaatttgataactcccacaatggaggct
gccaacaactagtcatgacatagagatgagattggtgaactataggtact
ggaagcccaagtagaccactccagtactggggtactcattaaccagtgga
aaaaaagacagcattttcaacaaatggttcaactggatattagcatgtag
aagaatgcaaattgatccattcttatcttcatgtacaaagctcaagtcca
agtggatcaaggacctccatataaaaccagatacactgaaagtaatagaa
gagaaagtggggaagaatctcaaatccatgggcacaggggaaattttcct
gaacagaacaccaatagcttgtactctaagatcaagaatcgacaaatggg
acatcatagaattgcaaagcttctgtaaggcaaaggacactgttaaaagg
acaaaatggcaaccagcaagttgggagaagatccttaccaaccatacttc
ccatagaaagataatatctaatctatacaaagaactcaagaagttagact
ccagagaaccaaagaaccctattaaaaatggggtacagagctaaacgaag
aattctcagctgaggaatactgaatggatgagaagcacctaaagaaatat
tcaacatgcttagtcatcagggaaatgcaaatcaaacaaccttaagattc
cacctcacaacaaatagaatggctaagataaaaaaactcaggggacagga
gatggtggcgaggatgtggagaaagaggaacactcctccattgctagtgg
gattacaaactggtacaatcactctggaaatcagtctggcagttcctcag
aaaattgaacatagcactacctgaggacccagctataccactcttgggca
tataaccaaaagatgctccaacatataacaaggacacatgctccattgtg
ttcatagcagccttattataatagtcaaaggtgggaag
gaattcttctgcctcccagatgttccaccttgtatttcctgcctaagcta
taggccataggcattttgattgacacgtgatgctttcatataatccccaa
gatattctttctacagtgtggagaatcaaagaagaaagattatgaatggg
cattaattagtccccatacctaaaatgtaccactgggtttacctccactt
cattcttgtgtgttattcatttcgccatatttactgttatattccattgg
aaagtgttcccaaagtgtccattggaaggtgtatccaagaatgacatatg
tagatgatttcaaaatagatttgagataggcatatgcattaccaagagac
gcgggttaaaagggagatggaagaggacatgaccaggtgaagagtttgtt
cttactgcaattttttgttttcatttgtactttttgatcatttactaaca
agaacctggctgtatccctgggcctctcctaaaaacatgtgctatttaca
tttttttaattggtagtttccctaacatatgctcaaatgtatatgtaaat
tagcacaataatgtaaaatagctaaaagtaattaacctcctatataaaag
aacttcaacctgaattaattttatttacatgctagcatcagattgaacat
ctgatttctggaatatcactaatactttattgttgttatcatttttacat
atcaccatataggttgtcgtgaaaatgtgctttggatttttccgttttta
ttattaagacaattatacataggcaagatttctcacatttgtcacagcta
gtcattccagataataaatattcaaataaagatatattgagtgatattta
acagggaaagattacagtaatgcatttttaagtgttttatagaagtgaca
aaaatacagtgtttttgttttaaagttaaagtgatcttatattttacgaa
gacattctatttagctggctcattatccttagaaataacttagagattaa
acataacactaattcactcatacacaatgacctataatacattttgccat
ggggctcattacttcaggatcagtaatttatttaaggagcttctgatgga
tgggcaaccaagttatggaagatttggacgttgctgtaggtgactaatcc
tttgaactgcaaggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_49292090_49292731
seq2: B6Ng01-136A14.b_46_687

seq1  GAATTCACAAGAAACAACACAGAAATTTGATAACTCCCACAATGGAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAGAAACAACACAGAAATTTGATAACTCCCACAATGGAGGCT  50

seq1  GCCAACAACTAGTCATGACATAGAGATGAGATTGGTGAACTATAGGTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACAACTAGTCATGACATAGAGATGAGATTGGTGAACTATAGGTACT  100

seq1  GGAAGCCCAAGTAGACCACTCCAGTACTGGGGTACTCATTAACCAGTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCCAAGTAGACCACTCCAGTACTGGGGTACTCATTAACCAGTGGA  150

seq1  AAAAAAGACAGCATTTTCAACAAATGGTTCAACTGGATATTAGCATGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGACAGCATTTTCAACAAATGGTTCAACTGGATATTAGCATGTAG  200

seq1  AAGAATGCAAATTGATCCATTCTTATCTTCATGTACAAAGCTCAAGTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGCAAATTGATCCATTCTTATCTTCATGTACAAAGCTCAAGTCCA  250

seq1  AGTGGATCAAGGACCTCCATATAAAACCAGATACACTGAAAGTAATAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGATCAAGGACCTCCATATAAAACCAGATACACTGAAAGTAATAGAA  300

seq1  GAGAAAGTGGGGAAGAATCTCAAATCCATGGGCACAGGGGAAATTTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGTGGGGAAGAATCTCAAATCCATGGGCACAGGGGAAATTTTCCT  350

seq1  GAACAGAACACCAATAGCTTGTACTCTAAGATCAAGAATCGACAAATGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAACACCAATAGCTTGTACTCTAAGATCAAGAATCGACAAATGGG  400

seq1  ACATCATAGAATTGCAAAGCTTCTGTAAGGCAAAGGACACTGTTAAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATAGAATTGCAAAGCTTCTGTAAGGCAAAGGACACTGTTAAAAGG  450

seq1  ACAAAATGGCAACCAGCAAGTTGGGAGAAGATCCTTACCAACCATACTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATGGCAACCAGCAAGTTGGGAGAAGATCCTTACCAACCATACTTC  500

seq1  CCATAGAAAGATAATATCTAATCTATACAAAGAACTCAAGAAGTTAGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGAAAGATAATATCTAATCTATACAAAGAACTCAAGAAGTTAGACT  550

seq1  CCAGAGAACCAAAGAACCCTATTAAAAATGGGGTACAGAGCTAAACGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAACCAAAGAACCCTATTAAAAATGGGGTACAGAGCTAAACGAAG  600

seq1  AATTCTCAGCTGAGGAATACTGAATGGATGAGAAGCACCTAA  642
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCAGCTGAGGAATACTGAATGGATGAGAAGCACCTAA  642

seq1: chr5_49436947_49438133
seq2: B6Ng01-136A14.g_68_1233 (reverse)

seq1  TGCCTTGACAGTTCCAAAGGATATGCTCACCTCACAGCAACACTTTCCAA  50
      ||||||| ||||| |||||||| |  |||||| ||||||||    |||||
seq2  TGCCTTG-CAGTT-CAAAGGAT-TAGTCACCT-ACAGCAAC---GTCCAA  43

seq1  A-CTCCCAT-ACTTGTTTTGCCCATCCATTCCAGACAGCTTTCTTAAAAT  98
      | || |||| |||||  ||||||||||||  |||| |||  || | ||||
seq2  ATCTTCCATAACTTG-GTTGCCCATCCAT--CAGA-AGC--TCCTTAAAT  87

seq1  AAATAACCTGATCCTGGAAGGTTAAAGAAGGCCCATGGCAAAAGGTATTA  148
      |||| | |||||||| ||||  ||| | || |||||||||||| ||||||
seq2  AAATTA-CTGATCCT-GAAG--TAATG-AGCCCCATGGCAAAATGTATTA  132

seq1  TAGGTCATTGTGGTATGAGTGGAATTAGTGTTTATGTTTAATCTCTAAAG  198
      ||||||||||| |||||||| ||||||||| |||||||||||||||||  
seq2  TAGGTCATTGT-GTATGAGT-GAATTAGTG-TTATGTTTAATCTCTAA--  177

seq1  GTATTTTCTAAGGATAATGAGCCAGCTTAAATAGAATGTCTTCGTAAAAT  248
      ||  |||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTTATTTCTAAGGATAATGAGCCAGC-TAAATAGAATGTCTTCGTAAAAT  226

seq1  ATAAGATCACTTTAAACTTTAAAAC-AAAACACTGTA-TTTTGTCACTTC  296
      ||||||||||||| ||||||||||| ||||||||||| ||||||||||||
seq2  ATAAGATCACTTT-AACTTTAAAACAAAAACACTGTATTTTTGTCACTTC  275

seq1  TATAAAACACTTAAAAATGCATTACTGTAATCTTTCCCTGTTAAATATCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAACACTTAAAAATGCATTACTGTAATCTTTCCCTGTTAAATATCA  325

seq1  CTCAATATATCTTTATTTGAATATTTATTATCTGGAATGACTAGCTGTGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATATATCTTTATTTGAATATTTATTATCTGGAATGACTAGCTGTGA  375

seq1  CAAATGTGAGAAATCTTGCCTATGTATAATTGTCTTAATAATAAAAACGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTGAGAAATCTTGCCTATGTATAATTGTCTTAATAATAAAAACGG  425

seq1  AAAAATCCAAAGCACATTTTCACGACAACCTATATGGTGATATGTAAAAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCCAAAGCACATTTTCACGACAACCTATATGGTGATATGTAAAAA  475

seq1  TGATAACAACAATAAAGTATTAGTGATATTCCAGAAATCAGATGTTCAAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAACAACAATAAAGTATTAGTGATATTCCAGAAATCAGATGTTCAAT  525

seq1  CTGATGCTAGCATGTAAATAAAATTAATTCAGGTTGAAGTTCTTTTATAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGCTAGCATGTAAATAAAATTAATTCAGGTTGAAGTTCTTTTATAT  575

seq1  AGGAGGTTAATTACTTTTAGCTATTTTACATTATTGTGCTAATTTACATA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTTAATTACTTTTAGCTATTTTACATTATTGTGCTAATTTACATA  625

seq1  TACATTTGAGCATATGTTAGGGAAACTACCAATTAAAAAAATGTAAATAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTGAGCATATGTTAGGGAAACTACCAATTAAAAAAATGTAAATAG  675

seq1  CACATGTTTTTAGGAGAGGCCCAGGGATACAGCCAGGTTCTTGTTAGTAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTTTTTAGGAGAGGCCCAGGGATACAGCCAGGTTCTTGTTAGTAA  725

seq1  ATGATCAAAAAGTACAAATGAAAACAAAAAATTGCAGTAAGAACAAACTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCAAAAAGTACAAATGAAAACAAAAAATTGCAGTAAGAACAAACTC  775

seq1  TTCACCTGGTCATGTCCTCTTCCATCTCCCTTTTAACCCGCGTCTCTTGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTGGTCATGTCCTCTTCCATCTCCCTTTTAACCCGCGTCTCTTGG  825

seq1  TAATGCATATGCCTATCTCAAATCTATTTTGAAATCATCTACATATGTCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCATATGCCTATCTCAAATCTATTTTGAAATCATCTACATATGTCA  875

seq1  TTCTTGGATACACCTTCCAATGGACACTTTGGGAACACTTTCCAATGGAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGATACACCTTCCAATGGACACTTTGGGAACACTTTCCAATGGAA  925

seq1  TATAACAGTAAATATGGCGAAATGAATAACACACAAGAATGAAGTGGAGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACAGTAAATATGGCGAAATGAATAACACACAAGAATGAAGTGGAGG  975

seq1  TAAACCCAGTGGTACATTTTAGGTATGGGGACTAATTAATGCCCATTCAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCCAGTGGTACATTTTAGGTATGGGGACTAATTAATGCCCATTCAT  1025

seq1  AATCTTTCTTCTTTGATTCTCCACACTGTAGAAAGAATATCTTGGGGATT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTCTTCTTTGATTCTCCACACTGTAGAAAGAATATCTTGGGGATT  1075

seq1  ATATGAAAGCATCACGTGTCAATCAAAATGCCTATGGCCTATAGCTTAGG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAAGCATCACGTGTCAATCAAAATGCCTATGGCCTATAGCTTAGG  1125

seq1  CAGGAAATACAAGGTGGAACATCTGGGAGGCAGAAGAATTC  1187
      |||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAATACAAGGTGGAACATCTGGGAGGCAGAAGAATTC  1166