BAC Information

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BAC

Clone NameB6Ng01-136B02
Chromosome5 (Build37)
Map Location 38,719,115 - 38,841,221
singlet/doubletdoublet
Overlap gene4930487D11Rik, Slc2a9
Upstream geneEvc, Evc2, LOC100040355, LOC100040988, Stk32b, Cytl1, Msx1, Stx18, Nsg1, LOC100040397, Zfp509, Lyar, Tmem128, Otop1, Drd5
Downstream geneWdr1, 4930421P07Rik, 6820424L24Rik, Clnk, LOC384174
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136B02.bB6Ng01-136B02.g
ACCDH935948DH935949
length1,1021,140
definitionDH935948|Mus musculus domesticus DNA, BAC clone: B6Ng01-136B02, 5' end.DH935949|Mus musculus domesticus DNA, BAC clone: B6Ng01-136B02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,719,115 - 38,720,219)(38,840,073 - 38,841,221)
sequence
gaattcacaaatttgaagaatggaattcacggcccacagagggtgaagtt
tggaaagtgttatagggaacttgggtgagagacagaagtcagagctgcca
tgtggcagggagttccggggtggggtagcattaagagtcactgtcttgtg
tgtaataaagctttgctgcagggaaggagaaggtaagaggggagctggta
agaacagtttgtgttccaggtgtaaagatacctccgagtttctgtcaagc
tctcagcgtggtttccatcaaaggggactccttccagacatccattctgg
catccctgacttctggccagagcatcaccaactgacatttaggtctaaac
acgtctggcacctctggcctcctgacatgatgaggctcaagaatagttct
ggggaagggaagggcacctggaaaggggtaaagacagagaaaggggggac
agagaagaacagaaataaagagaagagagagaagagaggaagaggctgac
caggaacatgagcagggaaagagagaataggagatagatagaattgaggt
aacccagtattctctctagctgttgctaggtagctgttgggcggagccta
gcagaattgtctgtaagccaaaacatggagtgagggcttagaaccgttcc
agcttttgctactctgagatttttgcattattctcagtctctaagcctca
tgtgcatttctgttgagtcacccagtcttgcaaagctggaagggcagagc
catctaagccctcagacatggagctacaggaactgaagtttgacctgctg
gccttcaatcttgctttgctccagtgtttcctcattatgccccctttact
cccttttaaatggtgatgtttgctctgtactattgtatgatggaaagatg
caatttgcattttggtttaacagggggttacactacagattgtctcaagt
cctcagaaagactttgaatgcagacttttgaagttggactaaatgcattt
tgcattatatatgggcccttggcctatggggacagggatagactgtggtt
gagtgagagtgttcccccataggctcatatgtcgggaattctttgtctta
gt
gaattctgatggaaccacgtccctttgtttggcatcatctctactctgct
gtagccacagacctctctttctctcctgacacaggacaatatgtgttcag
ttcgcagacatggccacaggctcagcttcagctctgggcattgatgctgc
tggcacatgaactctccttgagtgagctctcaggcccacctggttcacag
tagcatggaaataaagtggtggcacgtgggtaagctgccaccgagactga
aggagatgctgggcataagatgctcatcctagaactgacaagagtcggcc
atcatgcttcccatggccatgtgagatgtgagcaccgtggtcacaatgaa
ctcttcctgatgtggatcgttggtgcttgaacagtatttgtgtggtgtgc
acgtgttttaaaccgtgttataattgtcctcattgcatgggtcattgaat
ctgactcttacctctagaaataggtaaaaacaagaaacaaagtaagaaaa
ctcacatgggctttgaaatcagatccttaatcagacctcagacaattcgt
gtgtcagaaccattgtcaggatgggggtggggcactatatatatatatat
atatacacacacacacacacacacacacacacacacacacacacacacac
acacacttgggttcgtgaacaagaaaagcgccattcctgaggtccagggc
tgccactgggaccgaggggtagtctgagaagttttatctgcaggctctca
tggtccctgtaagtactgagaatgagtaacaggctcagcaagaggctgct
ggtcccccaaggtgaaagtctaaattacagataagcaggattcaccccaa
aagagcagttgtgagggctgaacatgatgcaatttacgcaaacttacatg
gtgtcttgtgtcacttgggaagtcttggaatgcctgtcatggtgccaaat
caagttggctgtagcacccaagggaatttgtcggcaatcatgactatgtg
ggactcacagaaagtcacaagaaaccaattgatctgtcttttttctcatc
tctcagcctgctttctccttcatctttctgatggagggtcagctagacca
accagatctcctctcttataccttaccttaaaagcctagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_38719115_38720219
seq2: B6Ng01-136B02.b_47_1148

seq1  GAATTCACAAATTTGAAGAATGGAATTCACGGCCCACAGAGGGTGAAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAATTTGAAGAATGGAATTCACGGCCCACAGAGGGTGAAGTT  50

seq1  TGGAAAGTGTTATAGGGAACTTGGGTGAGAGACAGAAGTCAGAGCTGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGTGTTATAGGGAACTTGGGTGAGAGACAGAAGTCAGAGCTGCCA  100

seq1  TGTGGCAGGGAGTTCCGGGGTGGGGTAGCATTAAGAGTCACTGTCTTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCAGGGAGTTCCGGGGTGGGGTAGCATTAAGAGTCACTGTCTTGTG  150

seq1  TGTAATAAAGCTTTGCTGCAGGGAAGGAGAAGGTAAGAGGGGAGCTGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATAAAGCTTTGCTGCAGGGAAGGAGAAGGTAAGAGGGGAGCTGGTA  200

seq1  AGAACAGTTTGTGTTCCAGGTGTAAAGATACCTCCGAGTTTCTGTCAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGTTTGTGTTCCAGGTGTAAAGATACCTCCGAGTTTCTGTCAAGC  250

seq1  TCTCAGCGTGGTTTCCATCAAAGGGGACTCCTTCCAGACATCCATTCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCGTGGTTTCCATCAAAGGGGACTCCTTCCAGACATCCATTCTGG  300

seq1  CATCCCTGACTTCTGGCCAGAGCATCACCAACTGACATTTAGGTCTAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTGACTTCTGGCCAGAGCATCACCAACTGACATTTAGGTCTAAAC  350

seq1  ACGTCTGGCACCTCTGGCCTCCTGACATGATGAGGCTCAAGAATAGTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCTGGCACCTCTGGCCTCCTGACATGATGAGGCTCAAGAATAGTTCT  400

seq1  GGGGAAGGGAAGGGCACCTGGAAAGGGGTAAAGACAGAGAAAGGGGGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGGGAAGGGCACCTGGAAAGGGGTAAAGACAGAGAAAGGGGGGAC  450

seq1  AGAGAAGAACAGAAATAAAGAGAAGAGAGAGAAGAGAGGAAGAGGCTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGAACAGAAATAAAGAGAAGAGAGAGAAGAGAGGAAGAGGCTGAC  500

seq1  CAGGAACATGAGCAGGGAAAGAGAGAATAGGAGATAGATAGAATTGAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACATGAGCAGGGAAAGAGAGAATAGGAGATAGATAGAATTGAGGT  550

seq1  AACCCAGTATTCTCTCTAGCTGTTGCTAGGTAGCTGTTGGGCGGAGCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGTATTCTCTCTAGCTGTTGCTAGGTAGCTGTTGGGCGGAGCCTA  600

seq1  GCAGAATTGTCTGTAAGCCAAAACATGGAGTGAGGGCTTAGAACCGTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATTGTCTGTAAGCCAAAACATGGAGTGAGGGCTTAGAACCGTTCC  650

seq1  AGCTTTTGCTACTCTGAGATTTTTGCATTATTCTCAGTCTCTAAGCCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTGCTACTCTGAGATTTTTGCATTATTCTCAGTCTCTAAGCCTCA  700

seq1  TGTGCATTTCTGTTGAGTCACCCAGTCTTGCAAAGCTGGAAGGGCAGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATTTCTGTTGAGTCACCCAGTCTTGCAAAGCTGGAAGGGCAGAGC  750

seq1  CATCTAAGCCCTCAGACATGGAGCTACAGGAACTGAAGTTTGACCTGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAAGCCCTCAGACATGGAGCTACAGGAACTGAAGTTTGACCTGCTG  800

seq1  GCCTTCAATCTTGCTTTGCTCCAGTGTTTCCTCATTATGCCCCCTTTACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCAATCTTGCTTTGCTCCAGTGTTTCCTCATTATGCCCCCTTTACT  850

seq1  CCCTTTTAAATGGTGATGTTTGCTCTGTACTATTGTATGATGGAAAGATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTAAATGGTGATGTTTGCTCTGTACTATTGTATGATGGAAAGATG  900

seq1  CAATTTGCATTTTGGTTTAACAGGGGGTTACAACTACAAGATTGTCTCAA  950
      ||||||||||||||||||||||||||||||| ||||| ||||||||||||
seq2  CAATTTGCATTTTGGTTTAACAGGGGGTTAC-ACTAC-AGATTGTCTCAA  948

seq1  GT-CTCAGAAAAGACTTTGAATGCAGACTTTTGAAGTTGGACTAAATGCA  999
      || ||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCAG-AAAGACTTTGAATGCAGACTTTTGAAGTTGGACTAAATGCA  997

seq1  TTTTGCATTATAATAT-GGCCCTTGGCCTATGGGGGACAGGGATTAGAAT  1048
      ||||||||||| |||| |||||||||||||| ||||||||||| |||| |
seq2  TTTTGCATTAT-ATATGGGCCCTTGGCCTAT-GGGGACAGGGA-TAGACT  1044

seq1  GTGGTTGAGTGAGAGTG-TCCCCCATAGGCTCATATGT-TGGAATTCTTG  1096
      ||||||||||||||||| ||||||||||||||||||||  ||||||||| 
seq2  GTGGTTGAGTGAGAGTGTTCCCCCATAGGCTCATATGTCGGGAATTCTTT  1094

seq1  GTCCTTAGT  1105
      || ||||||
seq2  GT-CTTAGT  1102

seq1: chr5_38840073_38841221
seq2: B6Ng01-136B02.g_69_1208 (reverse)

seq1  CCTAGCACTTTTAAGGTAAGTATTAAGAGA-GAGATCTGTGTTGGTCTAT  49
      |||||  |||||||||||||   ||||||| |||||||| ||||||||| 
seq2  CCTAG-GCTTTTAAGGTAAGGTATAAGAGAGGAGATCTG-GTTGGTCTA-  47

seq1  GCTGACCCTCCATCAGAAAGATTGACAGGAGGAAAGCAGGGCTGAGAGAT  99
      ||||||||||||||||||||| ||| |||| ||||||| |||||||||||
seq2  GCTGACCCTCCATCAGAAAGA-TGA-AGGA-GAAAGCA-GGCTGAGAGAT  93

seq1  GGAGAAAAAAGACAGATCAATTTGGTTTCCTTGTGACTTTCTGTGAGTCC  149
       ||||||||||||||||||| ||||||| |||||||||||||||||||||
seq2  -GAGAAAAAAGACAGATCAA-TTGGTTT-CTTGTGACTTTCTGTGAGTCC  140

seq1  AACATAAGTCATGTGTGCCGACAAATTCCCTTGGGTGCTACAGCCAACTT  199
       |||| |||||||  |||||||||||||||||||||||||||||||||||
seq2  CACAT-AGTCATGATTGCCGACAAATTCCCTTGGGTGCTACAGCCAACTT  189

seq1  GATTTGGGCACCATGACAGGCATTCAAAGACTTCCCAAGTGACACAAGAC  249
      ||||| ||||||||||||||||||| ||||||||||||||||||||||||
seq2  GATTT-GGCACCATGACAGGCATTCCAAGACTTCCCAAGTGACACAAGAC  238

seq1  ACCATGTAAGTTTGCGTAAATTGCATCATGTTCAGCCCTCACAACTGCTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTAAGTTTGCGTAAATTGCATCATGTTCAGCCCTCACAACTGCTC  288

seq1  -TTTGGGGTGAATCCTGCTTATCTGTAATTTAGACTTTCACCTTGGGGGA  348
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGGTGAATCCTGCTTATCTGTAATTTAGACTTTCACCTTGGGGGA  338

seq1  CCAGCAGCCTCTTGCTGAGCCTGTTACTCATTCTCAGTACTTACAGGGAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGCCTCTTGCTGAGCCTGTTACTCATTCTCAGTACTTACAGGGAC  388

seq1  CATGAGAGCCTGCAGAT-AAACTTCTCAGACTACCCCTCGGTCCCAGTGG  447
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CATGAGAGCCTGCAGATAAAACTTCTCAGACTACCCCTCGGTCCCAGTGG  438

seq1  CAGCCCTGGACCTCAGGAATGGCGCTTTTCTTGTTCACGAACCCAAGTGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTGGACCTCAGGAATGGCGCTTTTCTTGTTCACGAACCCAAGTGT  488

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAT  538

seq1  ATATATATATATATATAGTGCCCCACCCCCATCCTGACAATGGTTCTGAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATAGTGCCCCACCCCCATCCTGACAATGGTTCTGAC  588

seq1  ACACGAATTGTCTGAGGTCTGATTAAGGATCTGATTTCAAAGCCCATGTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGAATTGTCTGAGGTCTGATTAAGGATCTGATTTCAAAGCCCATGTG  638

seq1  AGTTTTCTTACTTTGTTTCTTGTTTTTACCTATTTCTAGAGGTAAGAGTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCTTACTTTGTTTCTTGTTTTTACCTATTTCTAGAGGTAAGAGTC  688

seq1  AGATTCAATGACCCATGCAATGAGGACAATTATAACACGGTTTAAAACAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCAATGACCCATGCAATGAGGACAATTATAACACGGTTTAAAACAC  738

seq1  GTGCACACCACACAAATACTGTTCAAGCACCAACGATCCACATCAGGAAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACACCACACAAATACTGTTCAAGCACCAACGATCCACATCAGGAAG  788

seq1  AGTTCATTGTGACCACGGTGCTCACATCTCACATGGCCATGGGAAGCATG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATTGTGACCACGGTGCTCACATCTCACATGGCCATGGGAAGCATG  838

seq1  ATGGCCGACTCTTGTCAGTTCTAGGATGAGCATCTTATGCCCAGCATCTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCGACTCTTGTCAGTTCTAGGATGAGCATCTTATGCCCAGCATCTC  888

seq1  CTTCAGTCTCGGTGGCAGCTTACCCACGTGCCACCACTTTATTTCCATGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTCTCGGTGGCAGCTTACCCACGTGCCACCACTTTATTTCCATGC  938

seq1  TACTGTGAACCAGGTGGGCCTGAGAGCTCACTCAAGGAGAGTTCATGTGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGAACCAGGTGGGCCTGAGAGCTCACTCAAGGAGAGTTCATGTGC  988

seq1  CAGCAGCATCAATGCCCAGAGCTGAAGCTGAGCCTGTGGCCATGTCTGCG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCATCAATGCCCAGAGCTGAAGCTGAGCCTGTGGCCATGTCTGCG  1038

seq1  AACTGAACACATATTGTCCTGTGTCAGGAGAGAAAGAGAGGTCTGTGGCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAACACATATTGTCCTGTGTCAGGAGAGAAAGAGAGGTCTGTGGCT  1088

seq1  ACAGCAGAGTAGAGATGATGCCAAACAAAGGGACGTGGTTCCATCAGAAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGAGTAGAGATGATGCCAAACAAAGGGACGTGGTTCCATCAGAAT  1138

seq1  TC  1149
      ||
seq2  TC  1140