BAC Information

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BAC

Clone NameB6Ng01-136E14
Chromosome5 (Build37)
Map Location 139,306,292 - 139,494,331
singlet/doubletdoublet
Overlap genePdgfa, Prkar1b
Upstream genePilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244
Downstream geneHeatr2, Unc84a, 1110007L15Rik, Centa1, Cox19, Cyp2w1, 3110082I17Rik, D830046C22Rik, Gpr146, C130050O18Rik, Gpr30, Zfand2a, Uncx4.1, LOC100041200, LOC100041209, LOC100041217, Micall2, Ints1, Mafk, BC019731, 1810042K04Rik, A930017N06Rik, LOC100041270, Mad1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136E14.bB6Ng01-136E14.g
ACCDH936100DH936101
length9781,062
definitionDH936100|Mus musculus domesticus DNA, BAC clone: B6Ng01-136E14, 5' end.DH936101|Mus musculus domesticus DNA, BAC clone: B6Ng01-136E14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,306,292 - 139,306,891)(139,493,274 - 139,494,331)
sequence
gaattcttctccagctacctgccatagtcattctctattgggttatggca
agtggctacagtcggatacctccagctgatacccatcagtccttggggct
ccattcacctgggaaatgtctatataattctagctacactggtatataaa
atagacacaaaattttaaatttattgataataaattataggtaagcctat
tctcaaacaagtctttggtatacatataatatttatacacacacatatat
atacatatatatgtgtatatatatatacatatatatatcacatatagcaa
tactatattggcatatataataatttaccttttgatgaagattaaacaaa
tttgcatactagtgagatggtattattatataaatggtattgctgtttgt
tttgttttgttttgtttgtttgttttgttttgttttgtttttgagaccaa
gtctctctgtacatccctggctatcctagaactcattctgtagactaggt
tgtcctccagctcagaggcctagcagtctctgcctcccgagtgctgggac
taatttaaagtagtgcaccacctagcacagctacgtttgtttgtttttac
ataaaatcttaatggaatacttgatacttcaggatacagaaatgacttca
acatttttcagagttggtcaatattttgattttatgatcgtccttgctga
ggacagtgaaccacatacatgtgaaggagacatagcagaagtgttttgag
ggccatttcagaaactgtttacatggtcaatcttaatcccaagccaaaat
ttactgaatgttttcacatgggactcaggtcaacaaactcaaatgggagt
tttaaaatcaaaatgctaatacaaactaaaccaaagatatgctaattgat
acttgcacccagggatgatgggaggaaaacattaaacgttccttctgtat
taaactattacgaccctgcagaagaatg
gaattcttgtctgatccccatacttgaactggccctgtgtcctgccaggt
ctcaagagtggggctgtggccacccttgtagctttcccccagagctggga
gttaatcagaacactgtccctggttcttgtaagattctctggtctaggcc
caagtgtaaaacagattgtgacaaatggagatgtcctcaaatgagcactc
aagctgagagaagaaacagaggttgaaaggcattcttggtccctgcgcac
tgtccccaactctcagaaggacccctgaaggacccaaattgatcctagcc
tcctatccagagactaagctatggccccagaaagtcaggaggtggtggct
gagccctctctactctcacagcgcttgggaagtccatttccgggtaggcc
aggcaccctgacctcatgtcaggacagttggccaagcccgtgacccctta
ctggctggacgcccagattgggcaggaagtgtggctgacggcggggcttt
ccaaacgtggtgagtctgggctgagtccccatctcctggagaccaggagc
catgactctgtcaacctgcctattggagaccccaaggaacagcaagcaac
tccaactttgctagttaaagttgtagttttgagccttcccagactctctc
tgtaaagcccgaatccctgtcccttgacttccaaacacctctcacccgag
tctctctgttcccttacaagaggggataatgtactgaaaccaggcttgac
cccacatccctaaaccatccaccgtggagtgtgatatgagccagccagac
ccaagggccacatgagtgtccacaactgcttagtgtcccctggggtgacg
gcatgtcatgagacagtgtgatcaacctttttcttgccccgctgtgcacg
tctaaggtgaccctttcagctgaccatcagctcccccttgtggggccctt
ggcctgggtgtcctgcctgccctggtggactatctgtggattctgtgggc
cctgcttctccatcccctatttttgtaccaggcgcggcatgaactattaa
agtgcaagtgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_139306292_139306891
seq2: B6Ng01-136E14.b_50_649

seq1  GAATTCTTCTCCAGCTACCTGCCATAGTCATTCTCTATTGGGTTATGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTCCAGCTACCTGCCATAGTCATTCTCTATTGGGTTATGGCA  50

seq1  AGTGGCTACAGTCGGATACCTCCAGCTGATACCCATCAGTCCTTGGGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTACAGTCGGATACCTCCAGCTGATACCCATCAGTCCTTGGGGCT  100

seq1  CCATTCACCTGGGAAATGTCTATATAATTCTAGCTACACTGGTATATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCACCTGGGAAATGTCTATATAATTCTAGCTACACTGGTATATAAA  150

seq1  ATAGACACAAAATTTTAAATTTATTGATAATAAATTATAGGTAAGCCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACACAAAATTTTAAATTTATTGATAATAAATTATAGGTAAGCCTAT  200

seq1  TCTCAAACAAGTCTTTGGTATACATATAATATTTATACACACACATATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAACAAGTCTTTGGTATACATATAATATTTATACACACACATATAT  250

seq1  ATACATATATATGTGTATATATATATACATATATATATCACATATAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATATATGTGTATATATATATACATATATATATCACATATAGCAA  300

seq1  TACTATATTGGCATATATAATAATTTACCTTTTGATGAAGATTAAACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATATTGGCATATATAATAATTTACCTTTTGATGAAGATTAAACAAA  350

seq1  TTTGCATACTAGTGAGATGGTATTATTATATAAATGGTATTGCTGTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATACTAGTGAGATGGTATTATTATATAAATGGTATTGCTGTTTGT  400

seq1  TTTGTTTTGTTTTGTTTGTTTGTTTTGTTTTGTTTTGTTTTTGAGACCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTTTTGTTTGTTTGTTTTGTTTTGTTTTGTTTTTGAGACCAA  450

seq1  GTCTCTCTGTACATCCCTGGCTATCCTAGAACTCATTCTGTAGACTAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCTGTACATCCCTGGCTATCCTAGAACTCATTCTGTAGACTAGGT  500

seq1  TGTCCTCCAGCTCAGAGGCCTAGCAGTCTCTGCCTCCCGAGTGCTGGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCCAGCTCAGAGGCCTAGCAGTCTCTGCCTCCCGAGTGCTGGGAC  550

seq1  TAATTTAAAGTAGTGCACCACCTAGCACAGCTACGTTTGTTTGTTTTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAAAGTAGTGCACCACCTAGCACAGCTACGTTTGTTTGTTTTTAC  600

seq1: chr5_139493274_139494331
seq2: B6Ng01-136E14.g_70_1131 (reverse)

seq1  TTCA-TTGCACATTTAATAGTTCATGCAGCGCTTGGTGACATAAATAGGG  49
      |||| |||||| ||||||||||||||| |||| |||| ||| ||||||||
seq2  TTCACTTGCAC-TTTAATAGTTCATGCCGCGCCTGGT-ACAAAAATAGGG  48

seq1  GATGGAGAAGCAGGG-CCACAGAATCCACAGATAGTCCA-CAGTGCAGGC  97
      ||||||||||||||| ||||||||||||||||||||||| ||| ||||||
seq2  GATGGAGAAGCAGGGCCCACAGAATCCACAGATAGTCCACCAGGGCAGGC  98

seq1  ACGACACACATGGCCAGGGCCACACAGCGGGGAGCTGATGGTCAGCTGGA  147
      | ||||| || | | |||||| ||||  |||||||||||||||||||| |
seq2  AGGACACCCAGGCCAAGGGCCCCACAAGGGGGAGCTGATGGTCAGCTGAA  148

seq1  AGGGTCACC-TAGACGTGCACAGCGGGGCAAG-AAAAGGTTGATCACACT  195
      ||||||||| |||||||||||||||||||||| |||||||||||||||||
seq2  AGGGTCACCTTAGACGTGCACAGCGGGGCAAGAAAAAGGTTGATCACACT  198

seq1  GTCTCATGACATGCCGGTCA-CCCAGGGGACACTAAGCAGTTGTGGACAC  244
      ||||||||||||||| |||| |||||||||||||||||||||||||||||
seq2  GTCTCATGACATGCC-GTCACCCCAGGGGACACTAAGCAGTTGTGGACAC  247

seq1  TCATGTGGCCCTTGGGTCTGGCTGGCTCATATCACACTCCACGGTGGATG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGGCCCTTGGGTCTGGCTGGCTCATATCACACTCCACGGTGGATG  297

seq1  GTTTAGGGATGTGGGGTCAAGCCTGGTTTCAGTACATTATCCCCTCTTGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGGGATGTGGGGTCAAGCCTGGTTTCAGTACATTATCCCCTCTTGT  347

seq1  AAGGGAACAGAGAGACTCGGGTGAGAGGTGTTTGGAAGTCAAGGGACAGG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAACAGAGAGACTCGGGTGAGAGGTGTTTGGAAGTCAAGGGACAGG  397

seq1  GATTCGGGCTTTACAGAGAGAGTCTGGGAAGGCTCAAAACTACAACTTTA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCGGGCTTTACAGAGAGAGTCTGGGAAGGCTCAAAACTACAACTTTA  447

seq1  ACTAGC-AAGTTGGAGTTGCTTGCTGTTCCTTGGGGTCTCCAATAGGCAG  493
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCAAAGTTGGAGTTGCTTGCTGTTCCTTGGGGTCTCCAATAGGCAG  497

seq1  GTTGACAGAGTCATGGCTCCTGGTCTCCAGGAGATGGGGACTCAGCCCAG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACAGAGTCATGGCTCCTGGTCTCCAGGAGATGGGGACTCAGCCCAG  547

seq1  ACTCACCACGTTTGGAAAGCCCCGCCGTCAGCCACACTTCCTGCCCAATC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACCACGTTTGGAAAGCCCCGCCGTCAGCCACACTTCCTGCCCAATC  597

seq1  TGGGCGTCCAGCCAGTAAGGGGTCACGGGCTTGGCCAACTGTCCTGACAT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCGTCCAGCCAGTAAGGGGTCACGGGCTTGGCCAACTGTCCTGACAT  647

seq1  GAGGTCAGGGTGCCTGGCCTACCCGGAAATGGACTTCCCAAGCGCTGTGA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCAGGGTGCCTGGCCTACCCGGAAATGGACTTCCCAAGCGCTGTGA  697

seq1  GAGTAGAGAGGGCTCAGCCACCACCTCCTGACTTTCTGGGGCCATAGCTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGAGAGGGCTCAGCCACCACCTCCTGACTTTCTGGGGCCATAGCTT  747

seq1  AGTCTCTGGATAGGAGGCTAGGATCAATTTGGGTCCTTCAGGGGTCCTTC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTGGATAGGAGGCTAGGATCAATTTGGGTCCTTCAGGGGTCCTTC  797

seq1  TGAGAGTTGGGGACAGTGCGCAGGGACCAAGAATGCCTTTCAACCTCTGT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTTGGGGACAGTGCGCAGGGACCAAGAATGCCTTTCAACCTCTGT  847

seq1  TTCTTCTCTCAGCTTGAGTGCTCATTTGAGGACATCTCCATTTGTCACAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTCTCAGCTTGAGTGCTCATTTGAGGACATCTCCATTTGTCACAA  897

seq1  TCTGTTTTACACTTGGGCCTAGACCAGAGAATCTTACAAGAACCAGGGAC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTACACTTGGGCCTAGACCAGAGAATCTTACAAGAACCAGGGAC  947

seq1  AGTGTTCTGATTAACTCCCAGCTCTGGGGGAAAGCTACAAGGGTGGCCAC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCTGATTAACTCCCAGCTCTGGGGGAAAGCTACAAGGGTGGCCAC  997

seq1  AGCCCCACTCTTGAGACCTGGCAGGACACAGGGCCAGTTCAAGTATGGGG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCACTCTTGAGACCTGGCAGGACACAGGGCCAGTTCAAGTATGGGG  1047

seq1  ATCAGACAAGAATTC  1058
      |||||||||||||||
seq2  ATCAGACAAGAATTC  1062