BAC Information

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BAC

Clone NameB6Ng01-136F15
Chromosome5 (Build37)
Map Location 102,286,050 - 102,428,081
singlet/doubletdoublet
Overlap geneWdfy3
Upstream geneA230097K15Rik, LOC100041888, LOC100040902, Cycs-ps2, LOC100040920, Nkx6-1, Cds1
Downstream geneEG666515, EG666527, LOC625780, Arhgap24, Mapk10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136F15.bB6Ng01-136F15.g
ACCDH936144DH936145
length4361,072
definitionDH936144|Mus musculus domesticus DNA, BAC clone: B6Ng01-136F15, 5' end.DH936145|Mus musculus domesticus DNA, BAC clone: B6Ng01-136F15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,286,050 - 102,286,491)(102,427,008 - 102,428,081)
sequence
tcatcttaaaaagtttttattgttaatgaagtaactctagaaagtcattt
tagcttacaatcttcctaagtccaagtgagatcagcactgtgaaagatgg
caataaacaataaaccagtggacggacttcacagcggttggttacataag
actgtgtttggaggtttagacagtagtgccgttttcaaatttcagagcct
gggctgcatccaagaccaaggaaaaatacttcccgtgcatggctgggact
tgattacttataatgtggcacacaggaaacagtttactgagcagtgtgtt
gagtgggttagaagttactgtatgacttacgacaaaaggtccaattatta
tagtgatcacatacctctaaccctctcaaatgacgccccccacctcgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gaattctctgtaagcattttcccctgcaaatccaaaattattttaaagac
atatgtcatctatttagtcgtttagcaaggatgcatgaatgggaagaagt
aagtcctgtgaagcctcaaatgctttaaatgcaggcagcgtcactagcaa
cacctcagacacaaacagcctttgttatactttttttttaaagatttctt
tattttatgtatatttgagtacatggtagctgtcttcagacacaccagaa
gagggcataggattccattacagatggttgtgagccaccatgtggttgct
gggaattgaactcaggacctttgcaagagcagtcagtgctcttaaccact
gagccatctcatcagcccctgttaaacactttttaatcctagcacttgga
aggctagcggcaggagggtctctgtgagtttaaggccagcctggtctaca
taactacttctgggacatccagggctatatagtgagaccctgtctacaaa
ttttaaaaaaagaaaaagaagaagaagcggaagaaaaggaagaagaaaat
tagggggaaagggaccggggatttccctctcagtcttccccaaaggtggt
tttcaaaatggcctcatgtgaccaacagtgaagtgatgtaattcacacat
agctatctgtggaggccagtcttgtgttcctataaatgcttcagggtcag
aggtatcaattttataccctttcccccggtccccagctctgctctctagg
gttcatccctcagacctgtcagtgagtccagccctcgctccccacacatg
agactgaagatgcagtttttatcccgtttgtgttggtgaactttattgtt
ttaaatcctgttgctgaaccaggagagttataattctgatatgctatctg
atctagtgataagggccgtttgtatctgctttgtcgtcagtaatgcgcgg
gttatttaaaagtgtttccttggggcttcataggacctaatctttccaac
ccacgtgtccccgctacatgactaaatagaagatggaatatttaaaataa
tttggtggagattacaggaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_102286050_102286491
seq2: B6Ng01-136F15.b_49_490

seq1  GAATTCTCATCTTAAAAAGTTTTTATTGTTAATGAAGTAACTCTAGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATCTTAAAAAGTTTTTATTGTTAATGAAGTAACTCTAGAAAG  50

seq1  TCATTTTAGCTTACAATCTTCCTAAGTCCAAGTGAGATCAGCACTGTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTAGCTTACAATCTTCCTAAGTCCAAGTGAGATCAGCACTGTGAA  100

seq1  AGATGGCAATAAACAATAAACCAGTGGACGGACTTCACAGCGGTTGGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCAATAAACAATAAACCAGTGGACGGACTTCACAGCGGTTGGTTA  150

seq1  CATAAGACTGTGTTTGGAGGTTTAGACAGTAGTGCCGTTTTCAAATTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGACTGTGTTTGGAGGTTTAGACAGTAGTGCCGTTTTCAAATTTCA  200

seq1  GAGCCTGGGCTGCATCCAAGACCAAGGAAAAATACTTCCCGTGCATGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGGGCTGCATCCAAGACCAAGGAAAAATACTTCCCGTGCATGGCT  250

seq1  GGGACTTGATTACTTATAATGTGGCACACAGGAAACAGTTTACTGAGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTTGATTACTTATAATGTGGCACACAGGAAACAGTTTACTGAGCAG  300

seq1  TGTGTTGAGTGGGTTAGAAGTTACTGTATGACTTACGACAAAAGGTCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGAGTGGGTTAGAAGTTACTGTATGACTTACGACAAAAGGTCCAA  350

seq1  TTATTATAGTGATCACATACCTCTAACCCTCTCAAATGACGCCCCCCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATAGTGATCACATACCTCTAACCCTCTCAAATGACGCCCCCCACC  400

seq1  TCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  442
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  442

seq1: chr5_102427008_102428081
seq2: B6Ng01-136F15.g_66_1137 (reverse)

seq1  TTTTCCTGTAAATTCTCCACCAAAATTATTTTAAATATACCATCTTCTAT  50
      |||||||||||  |||||||| |||||||||||||||| |||||||||||
seq2  TTTTCCTGTAA--TCTCCACC-AAATTATTTTAAATATTCCATCTTCTAT  47

seq1  TTAGTCATGTAGCGGGGACACGTGGGTGGGAAAGATTAGGTCCTATGAAG  100
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTAGTCATGTAGCGGGGACACGTGGGTTGGAAAGATTAGGTCCTATGAAG  97

seq1  CCACAAGGAAACACTTTTAAAT-ACCCGCGGCATTACTGACGACAAAGCA  149
      || ||||||||||||||||||| |||||| ||||||||||||||||||||
seq2  CCCCAAGGAAACACTTTTAAATAACCCGC-GCATTACTGACGACAAAGCA  146

seq1  GATACAAACGGCCCTTATCACTAGATCAGATAGCATATCAGAATTATTAA  199
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GATACAAACGGCCCTTATCACTAGATCAGATAGCATATCAGAATTA-TAA  195

seq1  CTCTCCTGGTTCAGCAACAGGATTT-AAACAATAAAGTTCACCAACACAA  248
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTCTCCTGGTTCAGCAACAGGATTTAAAACAATAAAGTTCACCAACACAA  245

seq1  ACGGAATAAAAACTGCATCTTCAGTCTCATGTGTGGGGAGCGAGGGCTGG  298
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGATAAAAACTGCATCTTCAGTCTCATGTGTGGGGAGCGAGGGCTGG  295

seq1  ACTCACTGACAGGTCTGAGGGATGAACCCTAGAGAGCAGAGCTGGGGACC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTGACAGGTCTGAGGGATGAACCCTAGAGAGCAGAGCTGGGGACC  345

seq1  GGGGGAAAGGGTATAAAATTGATACCTCTGACCCTGAAGCA-TTATAGGA  397
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGGGGAAAGGGTATAAAATTGATACCTCTGACCCTGAAGCATTTATAGGA  395

seq1  ACACAAGACTGGCCTCCACAGATAGCTATGTGTGAATTACATCACTTCAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGACTGGCCTCCACAGATAGCTATGTGTGAATTACATCACTTCAC  445

seq1  TGTTGGTCACATGAGGCCATTTTGAAAACCACCTTTGGGGAAGACTGAGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTCACATGAGGCCATTTTGAAAACCACCTTTGGGGAAGACTGAGA  495

seq1  GGGAAATCCCCGGTCCCTTTCCCCCTAATTTTCTTCTTCCTTTTCTTCCG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATCCCCGGTCCCTTTCCCCCTAATTTTCTTCTTCCTTTTCTTCCG  545

seq1  CTTCTTCTTCTTTTTCTTTTTTTAAAATTTGTAGACAGGGTCTCACTATA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTTCTTTTTCTTTTTTTAAAATTTGTAGACAGGGTCTCACTATA  595

seq1  TAGCCCTGGATGTCCCAGAAGTAGTTATGTAGACCAGGCTGGCCTTAAAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTGGATGTCCCAGAAGTAGTTATGTAGACCAGGCTGGCCTTAAAC  645

seq1  TCACAGAGACCCTCCTGCCGCTAGCCTTCCAAGTGCTAGGATTAAAAAGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAGACCCTCCTGCCGCTAGCCTTCCAAGTGCTAGGATTAAAAAGT  695

seq1  GTTTAACAGGGGCTGATGAGATGGCTCAGTGGTTAAGAGCACTGACTGCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAACAGGGGCTGATGAGATGGCTCAGTGGTTAAGAGCACTGACTGCT  745

seq1  CTTGCAAAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAAAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAA  795

seq1  CCATCTGTAATGGAATCCTATGCCCTCTTCTGGTGTGTCTGAAGACAGCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGTAATGGAATCCTATGCCCTCTTCTGGTGTGTCTGAAGACAGCT  845

seq1  ACCATGTACTCAAATATACATAAAATAAAGAAATCTTTAAAAAAAAAGTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTACTCAAATATACATAAAATAAAGAAATCTTTAAAAAAAAAGTA  895

seq1  TAACAAAGGCTGTTTGTGTCTGAGGTGTTGCTAGTGACGCTGCCTGCATT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAGGCTGTTTGTGTCTGAGGTGTTGCTAGTGACGCTGCCTGCATT  945

seq1  TAAAGCATTTGAGGCTTCACAGGACTTACTTCTTCCCATTCATGCATCCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCATTTGAGGCTTCACAGGACTTACTTCTTCCCATTCATGCATCCT  995

seq1  TGCTAAACGACTAAATAGATGACATATGTCTTTAAAATAATTTTGGATTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAACGACTAAATAGATGACATATGTCTTTAAAATAATTTTGGATTT  1045

seq1  GCAGGGGAAAATGCTTACAGAGAATTC  1074
      |||||||||||||||||||||||||||
seq2  GCAGGGGAAAATGCTTACAGAGAATTC  1072