BAC Information

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BAC

Clone NameB6Ng01-136F24
Chromosome5 (Build37)
Map Location 150,388,225 - 150,471,864
singlet/doubletdoublet
Overlap gene4930434E21Rik, Hsp110, EG433968
Upstream gene2210417A02Rik, LOC100041869, Katnal1, 8430423G03Rik, 1810059H22Rik, LOC667386, LOC100039964, Hmgb1, EG667410, LOC100040006, Uspl1, 2310047D07Rik, Alox5ap, 6330406I15Rik, 4930588N13Rik, LOC100040037, LOC100040062
Downstream geneB3galtl, LOC100040089, Rxfp2, LOC667470, Fry, LOC100042068, Gm5, XM_359419, Brca2, B230342M21Rik, BC037393
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136F24.bB6Ng01-136F24.g
ACCDH936162DH936163
length1,171946
definitionDH936162|Mus musculus domesticus DNA, BAC clone: B6Ng01-136F24, 5' end.DH936163|Mus musculus domesticus DNA, BAC clone: B6Ng01-136F24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(150,388,225 - 150,389,411)(150,470,915 - 150,471,864)
sequence
gaattccaacagtaatacacaaactagggcacagccttgccttcttcaca
gagttcgcagtttcgtaaagcatcagaggaaataacagagctctatatgc
aaggtttcccaggggagtcatggccttcggctatcacacgtaggtcagtg
aagtgcatatgcatttagtattccagcatgcacacatatgcgctggcata
ctcatgcacttagtaggcagacatagaagagacaaacatgattcttgaga
tgctcacacataggcgaggagataagcatcagaggaaatcggaagcgtgg
aatctagcaaacgatgataatcgaccgcgatgggagagccccaatagctt
tgttgtagcagaatccaggagatcagaagatcactagggggtttttagga
agggaaagataatcttcatgccagccaggagggggtgcttgagcacagag
cggaggcactggggtgtgctgtctgaaaggactgtggagggtctgattgg
ctagcatattagaagtaggcgggaggatatgctaatgagttgtaacagaa
gacacacactacaaagcttaaacaacagaaatctatttccctccgttcca
ggtcctaaggccaggctctggtgaggactccctttctggacaacagatag
aaagctagccactgtcagcatctctttgctgtgtcttcttcacatagaag
agcaagcatgagctgtgtggctcttcctgttcttgtgtggacacaaatcc
cagcacagggactgcattctcatgctctaggtgacaccagtaacctccct
atataccattaccttactttagctcagtggttctcaacatttccaaagct
atgtgacctttaatgcagtccctctgtaattttgttagttatgaatcata
atctaagtatctgatgtgcaacccctgtgaaagagtcatttgacacacac
acaccccaaggggtcatgacccacaggatgagaatcactggttcgggttt
gacatgtggatttgggggaatcaaacgtgcagcttaaaaataggaagaaa
gcattattcttgcagtgggtaggaaattctgcagtaaaagatctgggaaa
gagatactcatcaggcttcgctccagtagtctcacaatataattcaggca
gcaagcctttgtaattcaagc
gaattctgacaaagaccacagaccaccctgaccttgttgtgagaattccc
ctgatgttaatagctgtgacgttaatgtactattactttgctgaccaaat
cataataacccaccatgggggcaagcaaagtgagtcactaggccaaaggg
ttacttagtcagtatacaaaccaaccaatgcctgaaagggttacttgcta
caccaatgagaaccctgttgttcaaatctgccccttacaaacatataaaa
agtgtgttctttctttgttcttggtctctcctctggcctgcgtgctgaga
ggggagtccccaacatgttggatcaataaaaatcctcatgtgctttgcag
cgatggcggcagtctctgtgttctttgtgagtaagggtcctttgacaaac
tccaacaaactcacattgaagaccaatcatcacccactgttaggggccag
gctgcctacctggtcctccaccatcactgtagagatacttaagagccaag
catcaccagccaaaagccaccagtgtgagtgtcacagtcacttcagattc
cactgacttaaagggcaagagggtactgccaataacccagggtagaagcg
gggagtttgctactggtaaatacaacactgccaatcagctatcggcctct
cttcctgccaacctgcaacggtcagtgtgcctttactctaataagatccc
tgaggcaatcaacttgaaaagatgaaaggtttggtttggactcacagttg
tggctttggtttggtttagtttggtttaggtttgggtttggtttgctttt
ttttctttgtttgcttgtttgaggctctagttcagaactcactgggccca
atttacatggaaagaacatatggtgaagtcatggcagaaagagacagaca
gacagacaactgactgactaactgactgactgagaggatgacttac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_150388225_150389411
seq2: B6Ng01-136F24.b_41_1211

seq1  GAATTCCAACAGTAATACACAAACTAGGGCACAGCCTTGCCTTCTTCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACAGTAATACACAAACTAGGGCACAGCCTTGCCTTCTTCACA  50

seq1  GAGTTCGCAGTTTCGTAAAGCATCAGAGGAAATAACAGAGCTCTATATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCGCAGTTTCGTAAAGCATCAGAGGAAATAACAGAGCTCTATATGC  100

seq1  AAGGTTTCCCAGGGGAGTCATGGCCTTCGGCTATCACACGTAGGTCAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTCCCAGGGGAGTCATGGCCTTCGGCTATCACACGTAGGTCAGTG  150

seq1  AAGTGCATATGCATTTAGTATTCCAGCATGCACACATATGCGCTGGCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCATATGCATTTAGTATTCCAGCATGCACACATATGCGCTGGCATA  200

seq1  CTCATGCACTTAGTAGGCAGACATAGAAGAGACAAACATGATTCTTGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGCACTTAGTAGGCAGACATAGAAGAGACAAACATGATTCTTGAGA  250

seq1  TGCTCACACATAGGCGAGGAGATAAGCATCAGAGGAAATCGGAAGCGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACACATAGGCGAGGAGATAAGCATCAGAGGAAATCGGAAGCGTGG  300

seq1  AATCTAGCAAACGATGATAATCGACCGCGATGGGAGAGCCCCAATAGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAGCAAACGATGATAATCGACCGCGATGGGAGAGCCCCAATAGCTT  350

seq1  TGTTGTAGCAGAATCCAGGAGATCAGAAGATCACTAGGGGGTTTTTAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTAGCAGAATCCAGGAGATCAGAAGATCACTAGGGGGTTTTTAGGA  400

seq1  AGGGAAAGATAATCTTCATGCCAGCCAGGAGGGGGTGCTTGAGCACAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAGATAATCTTCATGCCAGCCAGGAGGGGGTGCTTGAGCACAGAG  450

seq1  CGGAGGCACTGGGGTGTGCTGTCTGAAAGGACTGTGGAGGGTCTGATTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGGCACTGGGGTGTGCTGTCTGAAAGGACTGTGGAGGGTCTGATTGG  500

seq1  CTAGCATATTAGAAGTAGGCGGGAGGATATGCTAATGAGTTGTAACAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATATTAGAAGTAGGCGGGAGGATATGCTAATGAGTTGTAACAGAA  550

seq1  GACACACACTACAAAGCTTAAACAACAGAAATCTATTTCCCTCCGTTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACACTACAAAGCTTAAACAACAGAAATCTATTTCCCTCCGTTCCA  600

seq1  GGTCCTAAGGCCAGGCTCTGGTGAGGACTCCCTTTCTGGACAACAGATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTAAGGCCAGGCTCTGGTGAGGACTCCCTTTCTGGACAACAGATAG  650

seq1  AAAGCTAGCCACTGTCAGCATCTCTTTGCTGTGTCTTCTTCACATAGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAGCCACTGTCAGCATCTCTTTGCTGTGTCTTCTTCACATAGAAG  700

seq1  AGCAAGCATGAGCTGTGTGGCTCTTCCTGTTCTTGTGTGGACACAAATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCATGAGCTGTGTGGCTCTTCCTGTTCTTGTGTGGACACAAATCC  750

seq1  CAGCACAGGGACTGCATTCTCATGCTCTAGGTGACACCAGTAACCTCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAGGGACTGCATTCTCATGCTCTAGGTGACACCAGTAACCTCCCT  800

seq1  ATATACCATTACCTTACTTTAGCTCAGTGGTTCTCAACATTTCCAAAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACCATTACCTTACTTTAGCTCAGTGGTTCTCAACATTTCCAAAGCT  850

seq1  ATGTGACCTTTAATGCAGTCCCTCTGTAATTTTGTTAGTTATGAATCATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACCTTTAATGCAGTCCCTCTGTAATTTTGTTAGTTATGAATCATA  900

seq1  ATCTAAGTATCTGATGTGCAACCCCTGTGAAAGAGTCATTTGACACACAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGTATCTGATGTGCAACCCCTGTGAAAGAGTCATTTGACACACAC  950

seq1  ACACCCCAAAGGGGTCATGACCCACAGGATGAGAATCACTGGGTTCGGGT  1000
      ||||||| |||||||||||||||||||||||||||||||| |||||||| 
seq2  ACACCCC-AAGGGGTCATGACCCACAGGATGAGAATCACT-GGTTCGGG-  997

seq1  TTTGACATGTGGATTTGGGGGAATCAAACGTGCAGCCCAAAAATAGGAAA  1050
      ||||||||||||||||||||||||||||||||||||  ||||||||| ||
seq2  TTTGACATGTGGATTTGGGGGAATCAAACGTGCAGCTTAAAAATAGG-AA  1046

seq1  GAAAGCATTATTC-TGCAGTTGGGGTAGGACATCTGGCAGTAGAGGATCT  1099
      ||||||||||||| ||||||  |||||||| ||   |||||| | |||| 
seq2  GAAAGCATTATTCTTGCAGT--GGGTAGGAAATTCTGCAGTAAAAGATC-  1093

seq1  TGGGAAAGAGATACCCATCAGTCTTCGCTTCCCCAGTAGTCTCACAATAT  1149
      |||||||||||||| |||||| |||||||   ||||||||||||||||||
seq2  TGGGAAAGAGATACTCATCAGGCTTCGCT---CCAGTAGTCTCACAATAT  1140

seq1  AATCCAAG-AGCAGGCAGAGCCTCTTTGATAATTCAAGC  1187
      ||| || | |||| ||       ||||| ||||||||||
seq2  AATTCAGGCAGCAAGC-------CTTTG-TAATTCAAGC  1171

seq1: chr5_150470915_150471864
seq2: B6Ng01-136F24.g_67_1012 (reverse)

seq1  GTAAGGTTCATCCTCTCAGTCAGTCAGTTAGTCAGTCAGTTTGTCTGTCT  50
      |||||  |||||||||||||||||||||||||||||||| ||||||||||
seq2  GTAAG--TCATCCTCTCAGTCAGTCAGTTAGTCAGTCAG-TTGTCTGTCT  47

seq1  GTCTGTCTCTTTCCTGCCATGACTTCACCATATGTTCTTTCCATGTAAAA  100
      |||||||||||| ||||||||||||||||||||||||||||||||| |||
seq2  GTCTGTCTCTTT-CTGCCATGACTTCACCATATGTTCTTTCCATGT-AAA  95

seq1  TTGGGCCCAGTGAGTTCTGAACTAGAGCCTCAAAACAAGCAAACAAAG-A  149
      ||||||||||||||||||||||||||||||| |||||||||||||||| |
seq2  TTGGGCCCAGTGAGTTCTGAACTAGAGCCTC-AAACAAGCAAACAAAGAA  144

seq1  AAAAAAGCAAACCAAA-CCAAACCTAAACCAAACTAAACCAAACCAAAGC  198
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAAAAAGCAAACCAAACCCAAACCTAAACCAAACTAAACCAAACCAAAGC  194

seq1  CACAACTGTGAGTCCAAACCAAACCTTTCATCTTTTCAAGTTGATTGCCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTGTGAGTCCAAACCAAACCTTTCATCTTTTCAAGTTGATTGCCT  244

seq1  CAGGGATCTTATTAGAGTAAAGGCACACTGACCGTTGCAGGTTGGCAGGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATCTTATTAGAGTAAAGGCACACTGACCGTTGCAGGTTGGCAGGA  294

seq1  AGAGAGGCCGATAGCTGATTGGCAGTGTTGTATTTACCAGTAGCAAACTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGCCGATAGCTGATTGGCAGTGTTGTATTTACCAGTAGCAAACTC  344

seq1  CCCGCTTCTACCCTGGGTTATTGGCAGTACCCTCTTGCCCTTTAAGTCAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCTTCTACCCTGGGTTATTGGCAGTACCCTCTTGCCCTTTAAGTCAG  394

seq1  TGGAATCTGAAGTGACTGTGACACTCACACTGGTGGCTTTTGGCTGGTGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATCTGAAGTGACTGTGACACTCACACTGGTGGCTTTTGGCTGGTGA  444

seq1  TGCTTGGCTCTTAAGTATCTCTACAGTGATGGTGGAGGACCAGGTAGGCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGCTCTTAAGTATCTCTACAGTGATGGTGGAGGACCAGGTAGGCA  494

seq1  GCCTGGCCCCTAACAGTGGGTGATGATTGGTCTTCAATGTGAGTTTGTTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGCCCCTAACAGTGGGTGATGATTGGTCTTCAATGTGAGTTTGTTG  544

seq1  GAGTTTGTCAAAGGACCCTTACTCACAAAGAACACAGAGACTGCCGCCAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGTCAAAGGACCCTTACTCACAAAGAACACAGAGACTGCCGCCAT  594

seq1  CGCTGCAAAGCACATGAGGATTTTTATTGATCCAACATGTTGGGGACTCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGCAAAGCACATGAGGATTTTTATTGATCCAACATGTTGGGGACTCC  644

seq1  CCTCTCAGCACGCAGGCCAGAGGAGAGACCAAGAACAAAGAAAGAACACA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCAGCACGCAGGCCAGAGGAGAGACCAAGAACAAAGAAAGAACACA  694

seq1  CTTTTTATATGTTTGTAAGGGGCAGATTTGAACAACAGGGTTCTCATTGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTATATGTTTGTAAGGGGCAGATTTGAACAACAGGGTTCTCATTGG  744

seq1  TGTAGCAAGTAACCCTTTCAGGCATTGGTTGGTTTGTATACTGACTAAGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCAAGTAACCCTTTCAGGCATTGGTTGGTTTGTATACTGACTAAGT  794

seq1  AACCCTTTGGCCTAGTGACTCACTTTGCTTGCCCCCATGGTGGGTTATTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTTGGCCTAGTGACTCACTTTGCTTGCCCCCATGGTGGGTTATTA  844

seq1  TGATTTGGTCAGCAAAGTAATAGTACATTAACGTCACAGCTATTAACATC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGGTCAGCAAAGTAATAGTACATTAACGTCACAGCTATTAACATC  894

seq1  AGGGGAATTCTCACAACAAGGTCAGGGTGGTCTGTGGTCTTTGTCAGAAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAATTCTCACAACAAGGTCAGGGTGGTCTGTGGTCTTTGTCAGAAT  944

seq1  TC  950
      ||
seq2  TC  946