BAC Information

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BAC

Clone NameB6Ng01-136H02
Chromosome5 (Build37)
Map Location 20,881,826 - 21,048,521
singlet/doubletdoublet
Overlap geneFgl2, AI847670, Fbxl13
Upstream geneMagi2, LOC100041850, Phtf2, LOC622367, Tmem60, Rsbn1l, Ptpn12, EG626903, A530088I07Rik
Downstream geneLOC625004, LOC667253, Armc10, AB112350, Pmpcb, Dnajc2, Psmc2, Slc26a5, Reln, Dnaja1-ps, LOC100041982, Orc5l, LOC100042049
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136H02.bB6Ng01-136H02.g
ACCDH936214DH936215
length1,1211,138
definitionDH936214|Mus musculus domesticus DNA, BAC clone: B6Ng01-136H02, 5' end.DH936215|Mus musculus domesticus DNA, BAC clone: B6Ng01-136H02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,047,396 - 21,048,521)(20,881,826 - 20,882,978)
sequence
gaattcttatgcagctgcactgttccctgaacatgacttcctagtgttct
aggtatgagaggtgagaagagaagacttgtctaaggttgaaataaatgta
cagaatggatacttccgtgaactagcgtgcagacgtgcattagtaccaac
caggacttaagttggaagtacccttgttttcctcattgtggctggatttc
tgatagctttttgaccttggccatctgatgtctctaaagtacttattaag
aaaacctgggactgtaggaattgtacattctttctctgctttccgttgag
agcagctgctttaaaaagctttgttatggttttacagcctaggaatgtct
ttctcccagatctgggagctgtccctttgacacaatctcatcaaagagga
tagtgtctcatctgtgggagggtagaacactacctcagatgagaccctag
gaaacacagaccccccctaccacagagaaaagtgtttctaagtacagaga
gaaatttgtgtgctcaaaaaattcctccagccaaacttgctaactgtaag
tgttttagcactttccctgcatctcaccttaaacagtctcccacagtagg
ccttatgttgtgtacatgcatattgtggccacaacacacataaacttgtc
tatgcacacacacaaacacattcatgccgccccacgtacacacatgaaca
aacatgtacaagcacactcattcccatatatactcatacatacacatgca
cacatctacacacatctacacacacacacacacacacacacacacacaca
cactctctctctttctctctctctctctctctaggcagttattagcagat
acagtagagtccaagtaagattctgtgctctactgccaaacatacctgat
ctgtcattgaaactgagctaatgtttaaattgtagggttttcacacacac
cacacacacacacacacacacacacacacacacacacacacactacctag
atttaaaaaattagcgcaaccaaaggctagaggatattcatattgtatgg
ggtgcactcccactatggtagcagtgaacttgaagctgagcgccgtttcc
tttgagccggacatgcttgca
gaattccttcagccctttaccatatgtctcagtttatattcctttcctat
ggctaaacatttcctttaaagctttacagcttttagaataaagctgaaaa
gatctaaaaagactcctatgttgctgttatatgaggaatgcttgaaagca
ctggaaatattgacaattatacattataattgcaaaacctttcattttta
ttagttgaaaagtttcctaatatttttattatttttataataaaaactaa
attattcagcaagctagattctatatacgcaagttttattttcactaggg
ctaaatatacacatttgagaatataccagtccttccaggtacaactgaaa
gccaagaactgtagtattatctttcgtctaagaagaacttaaagcatttt
agttctcaagaagaagggcagggatgggattgggggccagggacaatatg
tatagctaaatgtattcatctaatgcaaaatatggcattaaaatacctaa
aaatgtggtagcataatatatgtctcttccctctccaattgaaaaataat
gttaccctgtagactttggtttagtggtaattcacttactgtttatagcc
tgttagaccgcgatacaaaagctgctttatcctctccctctgctctctgt
gcacaatggtttgtgatgtaaggtgctagactactgtaaggtttccttgg
ggaaaggcatggtaagggaaaacacactggtttatattttgaaagccaat
cctaatcccaaagcaatactgttgtcgaggagtcaacgttctaggaagct
gacttttctagaacaaatgtatttattaggatgaattttggaattttagt
ttaaatattatacatttttatcctaagcagtcaattgcttattttcattc
ttagaaattcaagaatatatacatttttgccaattgtgagtccctggaat
tccttacttgtggatgtcaaggtcacattaaaagctctgggggcagtttc
actcacttatcttgtgaaaggttcacctcagaagaagaaacaacagccgc
acactaacgtgctctttgggtgaatctgagtgcgcatgcagtcgttccgt
gagtaactgactgacaaaggcctgtctaagcaataact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_21047396_21048521
seq2: B6Ng01-136H02.b_47_1167 (reverse)

seq1  TGCAAGCATGCCCCGGCTCAAAGGGAAACGGCTGACTCAGC-TCCAGTTC  49
      ||||||||||  |||||||||| |||||||||   |||||| || |||||
seq2  TGCAAGCATG-TCCGGCTCAAA-GGAAACGGC--GCTCAGCTTCAAGTTC  46

seq1  ACTGCTACCATAGT-GGAGTGCACCCCCTACAATATGAATAT-CTCTAGC  97
      |||||||||||||| |||||||||||| |||||||||||||| |||||||
seq2  ACTGCTACCATAGTGGGAGTGCACCCCATACAATATGAATATCCTCTAGC  96

seq1  CTTTGGTTGCGCTTATTTTTTAAATCTAGGTATGTGTGTGTGTGTGTGTG  147
      ||||||||||||| |||||||||||||||||| |||||||||||||||||
seq2  CTTTGGTTGCGCTAATTTTTTAAATCTAGGTA-GTGTGTGTGTGTGTGTG  145

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAAACCCTACAATT  197
      |||||||||||||||||||||||||| ||||||||||||||||||||| |
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTG-GTGTGTGTGAAAACCCTACAA-T  193

seq1  TTAAACATTAGCTCAGTTTTCAATGACAGATCAGGTATGTTTGGCAGTAG  247
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTAAACATTAGCTCAG-TTTCAATGACAGATCAGGTATGTTTGGCAGTAG  242

seq1  AGCACAGAATCTTACTTGGACTCTACTGTATCTGCTAATAACTGCCTAGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGAATCTTACTTGGACTCTACTGTATCTGCTAATAACTGCCTAGA  292

seq1  GAGAGAGAGAGAGAGAAAGAGAGAGAGTGTGTGTGTGTGTGTGTGTGTGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAAAGAGAGAGAGTGTGTGTGTGTGTGTGTGTGTGT  342

seq1  GTGTGTGTGTGTAGATGTGTGTAGATGTGTGCATGTGTATGTATGAGTAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTAGATGTGTGTAGATGTGTGCATGTGTATGTATGAGTAT  392

seq1  ATATGGGAATGAGTGTGCTTGTACATGTTTGTTCATGTGTGTACGTGGGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGGAATGAGTGTGCTTGTACATGTTTGTTCATGTGTGTACGTGGGG  442

seq1  CGGCATGAATGTGTTTGTGTGTGTGCATAGACAAGTTTATGTGTGTTGTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCATGAATGTGTTTGTGTGTGTGCATAGACAAGTTTATGTGTGTTGTG  492

seq1  GCCACAATATGCATGTACACAACATAAGGCCTACTGTGGGAGACTGTTTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAATATGCATGTACACAACATAAGGCCTACTGTGGGAGACTGTTTA  542

seq1  AGGTGAGATGCAGGGAAAGTGCTAAAACACTTACAGTTAGCAAGTTTGGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGATGCAGGGAAAGTGCTAAAACACTTACAGTTAGCAAGTTTGGC  592

seq1  TGGAGGAATTTTTTGAGCACACAAATTTCTCTCTGTACTTAGAAACACTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAATTTTTTGAGCACACAAATTTCTCTCTGTACTTAGAAACACTT  642

seq1  TTCTCTGTGGTAGGGGGGGTCTGTGTTTCCTAGGGTCTCATCTGAGGTAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTGGTAGGGGGGGTCTGTGTTTCCTAGGGTCTCATCTGAGGTAG  692

seq1  TGTTCTACCCTCCCACAGATGAGACACTATCCTCTTTGATGAGATTGTGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTACCCTCCCACAGATGAGACACTATCCTCTTTGATGAGATTGTGT  742

seq1  CAAAGGGACAGCTCCCAGATCTGGGAGAAAGACATTCCTAGGCTGTAAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGACAGCTCCCAGATCTGGGAGAAAGACATTCCTAGGCTGTAAAA  792

seq1  CCATAACAAAGCTTTTTAAAGCAGCTGCTCTCAACGGAAAGCAGAGAAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAACAAAGCTTTTTAAAGCAGCTGCTCTCAACGGAAAGCAGAGAAAG  842

seq1  AATGTACAATTCCTACAGTCCCAGGTTTTCTTAATAAGTACTTTAGAGAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACAATTCCTACAGTCCCAGGTTTTCTTAATAAGTACTTTAGAGAC  892

seq1  ATCAGATGGCCAAGGTCAAAAAGCTATCAGAAATCCAGCCACAATGAGGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATGGCCAAGGTCAAAAAGCTATCAGAAATCCAGCCACAATGAGGA  942

seq1  AAACAAGGGTACTTCCAACTTAAGTCCTGGTTGGTACTAATGCACGTCTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGGGTACTTCCAACTTAAGTCCTGGTTGGTACTAATGCACGTCTG  992

seq1  CACGCTAGTTCACGGAAGTATCCATTCTGTACATTTATTTCAACCTTAGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCTAGTTCACGGAAGTATCCATTCTGTACATTTATTTCAACCTTAGA  1042

seq1  CAAGTCTTCTCTTCTCACCTCTCATACCTAGAACACTAGGAAGTCATGTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTTCTCTTCTCACCTCTCATACCTAGAACACTAGGAAGTCATGTT  1092

seq1  CAGGGAACAGTGCAGCTGCATAAGAATTC  1126
      |||||||||||||||||||||||||||||
seq2  CAGGGAACAGTGCAGCTGCATAAGAATTC  1121

seq1: chr5_20881826_20882978
seq2: B6Ng01-136H02.g_66_1203

seq1  GAATTCCTTCAGCCCTTTACCATATGTCTCAGTTTATATTCCTTTCCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCAGCCCTTTACCATATGTCTCAGTTTATATTCCTTTCCTAT  50

seq1  GGCTAAACATTTCCTTTAAAGCTTTACAGCTTTTAGAATAAAGCTGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAACATTTCCTTTAAAGCTTTACAGCTTTTAGAATAAAGCTGAAAA  100

seq1  GATCTAAAAAGACTCCTATGTTGCTGTTATATGAGGAATGCTTGAAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAAAAAGACTCCTATGTTGCTGTTATATGAGGAATGCTTGAAAGCA  150

seq1  CTGGAAATATTGACAATTATACATTATAATTGCAAAACCTTTCATTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAATATTGACAATTATACATTATAATTGCAAAACCTTTCATTTTTA  200

seq1  TTAGTTGAAAAGTTTCCTAATATTTTTATTATTTTTATAATAAAAACTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGAAAAGTTTCCTAATATTTTTATTATTTTTATAATAAAAACTAA  250

seq1  ATTATTCAGCAAGCTAGATTCTATATACGCAAGTTTTATTTTCACTAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCAGCAAGCTAGATTCTATATACGCAAGTTTTATTTTCACTAGGG  300

seq1  CTAAATATACACATTTGAGAATATACCAGTCCTTCCAGGTACAACTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATATACACATTTGAGAATATACCAGTCCTTCCAGGTACAACTGAAA  350

seq1  GCCAAGAACTGTAGTATTATCTTTCGTCTAAGAAGAACTTAAAGCATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGAACTGTAGTATTATCTTTCGTCTAAGAAGAACTTAAAGCATTTT  400

seq1  AGTTCTCAAGAAGAAGGGCAGGGATGGGATTGGGGGCCAGGGACAATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCAAGAAGAAGGGCAGGGATGGGATTGGGGGCCAGGGACAATATG  450

seq1  TATAGCTAAATGTATTCATCTAATGCAAAATATGGCATTAAAATACCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCTAAATGTATTCATCTAATGCAAAATATGGCATTAAAATACCTAA  500

seq1  AAATGTGGTAGCATAATATATGTCTCTTCCCTCTCCAATTGAAAAATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGGTAGCATAATATATGTCTCTTCCCTCTCCAATTGAAAAATAAT  550

seq1  GTTACCCTGTAGACTTTGGTTTAGTGGTAATTCACTTACTGTTTATAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCCTGTAGACTTTGGTTTAGTGGTAATTCACTTACTGTTTATAGCC  600

seq1  TGTTAGACCGCGATACAAAAGCTGCTTTATCCTCTCCCTCTGCTCTCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGACCGCGATACAAAAGCTGCTTTATCCTCTCCCTCTGCTCTCTGT  650

seq1  GCACAATGGTTTGTGATGTAAGGTGCTAGACTACTGTAAGGTTTCCTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAATGGTTTGTGATGTAAGGTGCTAGACTACTGTAAGGTTTCCTTGG  700

seq1  GGAAAGGCATGGTAAGGGAAAACACACTGGTTTATATTTTGAAAGCCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGCATGGTAAGGGAAAACACACTGGTTTATATTTTGAAAGCCAAT  750

seq1  CCTAATCCCAAAGCAATACTGTTGTCGAGGAGTCAACGTTCTAGGAAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATCCCAAAGCAATACTGTTGTCGAGGAGTCAACGTTCTAGGAAGCT  800

seq1  GACTTTTCTAGAACAAATGTATTTATTAGGATGAATTTTGGAATTTTAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTCTAGAACAAATGTATTTATTAGGATGAATTTTGGAATTTTAGT  850

seq1  TTAAATATTATACATTTTAATCCTAAGCAGTCAATTGCTTA-TTTCATTC  899
      |||||||||||||||||| |||||||||||||||||||||| ||||||||
seq2  TTAAATATTATACATTTTTATCCTAAGCAGTCAATTGCTTATTTTCATTC  900

seq1  TTAGAAATTCAAAGAATATATACAATTTTAGCCAAATGTGAGTCCCTGGA  949
      |||||||||| |||||||||||| ||||| ||||| ||||||||||||||
seq2  TTAGAAATTC-AAGAATATATAC-ATTTTTGCCAATTGTGAGTCCCTGGA  948

seq1  ATTCCTTACTTGTGGATGTCAAGGGTCACATTAAAAGGCTCTGGGGGCAG  999
      |||||||||||||||||||||| ||||||||||||| |||||||||||||
seq2  ATTCCTTACTTGTGGATGTCAA-GGTCACATTAAAA-GCTCTGGGGGCAG  996

seq1  TTTCACTCACTTTATTCTTGTGAAAAGGGGTCA-CTCAGA--GAGAAACA  1046
      ||||||||||||   ||||||||||  || ||| ||||||   |||||||
seq2  TTTCACTCACTT--ATCTTGTGAAA--GGTTCACCTCAGAAGAAGAAACA  1042

seq1  ACCCAGCCGCACACTTAAACGTGCTCTTGGGTGGAATCTGAAGTGCCGCA  1096
      |  ||||||||||||  ||||||||||| ||  ||||||| |||| ||||
seq2  A--CAGCCGCACACT--AACGTGCTCTTTGGGTGAATCTG-AGTG-CGCA  1086

seq1  TGCAGTCAGTCACGTGGAGTAACTGACTGTACAACATGCACTGTCTAAGC  1146
      ||||||| ||  ||| ||||||||||||| |||| | || ||||||||||
seq2  TGCAGTC-GTTCCGT-GAGTAACTGACTG-ACAA-AGGC-CTGTCTAAGC  1131

seq1  AATAACT  1153
      |||||||
seq2  AATAACT  1138