BAC Information

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BAC

Clone NameB6Ng01-136K21
Chromosome5 (Build37)
Map Location 57,035,366 - 57,152,383
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100041335, LOC100041349, LOC666455, LOC625721, EG666465, Pcdh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136K21.bB6Ng01-136K21.g
ACCDH936390DH936391
length1,0041,175
definitionDH936390|Mus musculus domesticus DNA, BAC clone: B6Ng01-136K21, 5' end.DH936391|Mus musculus domesticus DNA, BAC clone: B6Ng01-136K21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,035,366 - 57,036,378)(57,151,200 - 57,152,383)
sequence
gaattccaggttgagaggctctgatgccctactctcacctgttcagtgca
ttcacaagatgcaggaaacatatataaagagaaaaacactcatattcata
aaaacaggtagaggcaaccagtgattgtaaaattgtggagagtcagcatg
gaataagctttctgataaattattcacactcaagtgatcactcttaaact
catatatatactaacaacattgaatggtcttaatatgtatgcacatattt
caagctatataattttatattaattacagatttatatatatattataatg
agtataatacattaagtgtatttgagttcagaagcactcactgaatgagt
ttggatggggagaggaaaagatagaataatgtaaaatactgaactcatat
atgaaatcctaaaataaaagaaatgcttaattaaaatgatttattgttat
ttttaattatgtgcatgtgtttctgtgtatcatctgtgtttggggtattg
cagaatatagacgatgaaaacagataatctgctgcttcagctacctagat
tccatgacctcataaaccataggaatttatttgggtttacaggattagat
atgatttcattatcattgagagaaaattaagtccaagtaaacagttttta
accccaacataagtggcattattgcaaccttgattatttgttgatgttgg
tgatttctgtgctttgtagaatttctatctgggtggtaatattaattgct
tggtctctcctggtagcttgcatagaaattttaaaaactgtgaattaatt
tccagagagttgcctttcattcagttcaagatcagtttcttctagacatt
tctctaatgtgtataatattttcagcaataagaacttgtttttagagtgg
ggaggtaaccaaggtagaaaattaaattaaaatgttgcatattggaaaga
gaataacatttattctactcacagatgaatatattcaaatcagaggatca
aagt
gaattccagtcatgacttcctttggtgatgaacagcagtatcgaagtata
agctgaataaaccctttcctccccaacttgcttcttggtcatgatgtttg
tgcaggaatagaaaccctgactaagacaacatgtagtgcaccattttcat
ttatcctcagacatcttcctgagggtaaaaatggagaaagggataaagag
ggactattttgcctactagactggttttatacattcattctgatttagta
ttaattgctatactttgttattcaatacagaatggaaaagatgcacttca
aattttatatacatagaactcacaaaagatgaatagttgaagaaaagtta
tgataaaatagttgagtaattttcataactgtagttgccaaagtattagt
gacagtttaaaatatccaggttgatactctcaaactaaacatattaagtt
attttttgaattctacctccaattattatcaccatctttgccttgtatat
atttattcttttgtctgtgtctttacatgtttgtaaagtagcaattcttg
ctgggctgtggtggtgcatgcctttgatcccagcacttgggaggcagaag
caggtggatttctgagttcaaggccagcttgctctacagacttattttca
aaacagccagggctatacagagaaaccctgcctcgaaaaaaaaaacaaca
aaacaaaacaaacaaacaaaaaaacaaagaaaaatgaatttttcagatgc
agcaaaagaaaagaatatttctctaattgtggtgcgtgtaaaaattgaat
tagctgattagcttactggctcatggcctaaaattctcaatgcataattt
aatagcaagatctacctgacttatgaaacatacccaatgccattaatcta
tataacttaaatacacaattatttataatactttatcaagatatatccat
tccacaatgataggcccaacaaacttttactccattttcatcttctaagt
aaaaataaggacgagtgctcactagacctcctgtcatgcttgtgagaact
atttagaacaataatgtttccagttctacaagtcattataggtgatttgt
aatctgggcagaaagtaccttacgatggcatagcggcatcttactggttt
atggagagagaaataatgccagttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_57035366_57036378
seq2: B6Ng01-136K21.b_47_1050

seq1  GAATTCCAGGTTGAGAGGCTCTGATGCCCTACTCTCACCTGTTCAGTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTTGAGAGGCTCTGATGCCCTACTCTCACCTGTTCAGTGCA  50

seq1  TTCACAAGATGCAGGAAACATATATAAAGAGAAAAACACTCATATTCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAAGATGCAGGAAACATATATAAAGAGAAAAACACTCATATTCATA  100

seq1  AAAACAGGTAGAGGCAACCAGTGATTGTAAAATTGTGGAGAGTCAGCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGGTAGAGGCAACCAGTGATTGTAAAATTGTGGAGAGTCAGCATG  150

seq1  GAATAAGCTTTCTGATAAATTATTCACACTCAAGTGATCACTCTTAAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGCTTTCTGATAAATTATTCACACTCAAGTGATCACTCTTAAACT  200

seq1  CATATATATACTAACAACATTGAATGGTCTTAATATGTATGCACATATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATATACTAACAACATTGAATGGTCTTAATATGTATGCACATATTT  250

seq1  CAAGCTATATAATTTTATATTAATTACAGATTTATATATATATTATAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTATATAATTTTATATTAATTACAGATTTATATATATATTATAATG  300

seq1  AGTATAATACATTAAGTGTATTTGAGTTCAGAAGCACTCACTGAATGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAATACATTAAGTGTATTTGAGTTCAGAAGCACTCACTGAATGAGT  350

seq1  TTGGATGGGGAGAGGAAAAGATAGAATAATGTAAAATACTGAACTCATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATGGGGAGAGGAAAAGATAGAATAATGTAAAATACTGAACTCATAT  400

seq1  ATGAAATCCTAAAATAAAAGAAATGCTTAATTAAAATGATTTATTGTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATCCTAAAATAAAAGAAATGCTTAATTAAAATGATTTATTGTTAT  450

seq1  TTTTAATTATGTGCATGTGTTTCTGTGTATCATCTGTGTTTGGGGTATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTATGTGCATGTGTTTCTGTGTATCATCTGTGTTTGGGGTATTG  500

seq1  CAGAATATAGACGATGAAAACAGATAATCTGCTGCTTCAGCTACCTAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATATAGACGATGAAAACAGATAATCTGCTGCTTCAGCTACCTAGAT  550

seq1  TCCATGACCTCATAAACCATAGGAATTTATTTGGGTTTACAGGATTAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGACCTCATAAACCATAGGAATTTATTTGGGTTTACAGGATTAGAT  600

seq1  ATGATTTCATTATCATTGAGAGAAAATTAAGTCCAAGTAAACAGTTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTCATTATCATTGAGAGAAAATTAAGTCCAAGTAAACAGTTTTTA  650

seq1  ACCCCAACATAAGTGGCATTATTGCAACCTTGATTATTTGTTGATGTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAACATAAGTGGCATTATTGCAACCTTGATTATTTGTTGATGTTGG  700

seq1  TGATTTCTGTGCTTTGTAGAATTTCTATCTGGGTGGTAATATTAATTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCTGTGCTTTGTAGAATTTCTATCTGGGTGGTAATATTAATTGCT  750

seq1  TGGTCTCTCCTGGTAGCTTGCATAGAAATTTTAAAAACTGTGAATTAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCTCCTGGTAGCTTGCATAGAAATTTTAAAAACTGTGAATTAATT  800

seq1  TCCAGAGAGTTGCCTTTCAATTCAGTTCAAGATCAGTTTCTTCTAGACAT  850
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCCAGAGAGTTGCCTTTC-ATTCAGTTCAAGATCAGTTTCTTCTAGACAT  849

seq1  TTCTCTAATGTGTATAATATTTTCAGCAATAAGAACTTGTTTTTAAGAGT  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTCTCTAATGTGTATAATATTTTCAGCAATAAGAACTTGTTTTT-AGAGT  898

seq1  GGGGAGGTAACCAAGGTAAGAAAATTAAATTAAAATGTTGCATATTGGAA  950
      ||||||||||||||||| |||||||||||||||||||||||||||||| |
seq2  GGGGAGGTAACCAAGGT-AGAAAATTAAATTAAAATGTTGCATATTGG-A  946

seq1  AAGAAGAAATAACATTTATTCTACTCACAGATGACATAATATTCAAATCC  1000
      ||||   ||||||||||||||||||||||||||| || |||||||||| |
seq2  AAGA--GAATAACATTTATTCTACTCACAGATGA-AT-ATATTCAAAT-C  991

seq1  AGAGATTCAAAGT  1013
      ||||  |||||||
seq2  AGAGGATCAAAGT  1004

seq1: chr5_57151200_57152383
seq2: B6Ng01-136K21.g_68_1242 (reverse)

seq1  AAACTTGCATTATTCTTCTTCTCCATAAACACAGTAAGATGCTGCTTATG  50
      ||||| ||||||||  || ||||||||||| ||||||||||| || ||||
seq2  AAACTGGCATTATTTCTC-TCTCCATAAAC-CAGTAAGATGCCGC-TATG  47

seq1  CATACTGTAGTTACCTCTCTGCCCAGA-TACAAATCACATA-ATTGACCT  98
      |   |   || || || |||||||||| |||||||||| || | ||| ||
seq2  CCATCGTAAGGTA-CTTTCTGCCCAGATTACAAATCACCTATAATGA-CT  95

seq1  TGTAGAAACTGGAAACATTATTGTTTCTAAATAG-TCTCACAAGCATGAC  147
      ||||| ||||||||||||||||| |||||||||| |||||||||||||||
seq2  TGTAG-AACTGGAAACATTATTG-TTCTAAATAGTTCTCACAAGCATGAC  143

seq1  AGGAGGTCTAGTGAGCAACTCGTCCCTTATTTTTAACTTAGAAAGATGAA  197
      |||||||||||||||| |||||| |||||||||| |||||| ||||||||
seq2  AGGAGGTCTAGTGAGC-ACTCGT-CCTTATTTTT-ACTTAG-AAGATGAA  189

seq1  AATGGGGTAAAAGTTTGTTGGGCCTATCATTGTGGAATGGATATATCTTG  247
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGTAAAAGTTTGTTGGGCCTATCATTGTGGAATGGATATATCTTG  239

seq1  ATAAAGTATTTATAAATAATTGTGTATTTAAGTTATATAGATTAATGGCA  297
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTA-TTATAAATAATTGTGTATTTAAGTTATATAGATTAATGGCA  288

seq1  TTGGGTATGTTTCATAAGTCAGGTAGATCTTGCTATTAAATTATGCATTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTATGTTTCATAAGTCAGGTAGATCTTGCTATTAAATTATGCATTG  338

seq1  AGAATTTTAGGCCATGAGCCAGTAAGCTAATCAGCTAATTCAATTTTTAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTTAGGCCATGAGCCAGTAAGCTAATCAGCTAATTCAATTTTTAC  388

seq1  ACGCACCACAATTAGAGAAATATTCTTTTCTTTTGCTGCATCTGAAAAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCACCACAATTAGAGAAATATTCTTTTCTTTTGCTGCATCTGAAAAAT  438

seq1  TCATTTTTCTTTGTTTTTTTGTTTGTTTGTTTTGTTTTGTTGTTTTTTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTCTTTGTTTTTTTGTTTGTTTGTTTTGTTTTGTTGTTTTTTTT  488

seq1  TTCGAGGCAGGGTTTCTCTGTATAGCCCTGGCTGTTTTGAAAATAAGTCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGGCAGGGTTTCTCTGTATAGCCCTGGCTGTTTTGAAAATAAGTCT  538

seq1  GTAGAGCAAGCTGGCCTTGAACTCAGAAATCCACCTGCTTCTGCCTCCCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGCAAGCTGGCCTTGAACTCAGAAATCCACCTGCTTCTGCCTCCCA  588

seq1  AGTGCTGGGATCAAAGGCATGCACCACCACAGCCCAGCAAGAATTGCTAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGGGATCAAAGGCATGCACCACCACAGCCCAGCAAGAATTGCTAC  638

seq1  TTTACAAACATGTAAAGACACAGACAAAAGAATAAATATATACAAGGCAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAAACATGTAAAGACACAGACAAAAGAATAAATATATACAAGGCAA  688

seq1  AGATGGTGATAATAATTGGAGGTAGAATTCAAAAAATAACTTAATATGTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTGATAATAATTGGAGGTAGAATTCAAAAAATAACTTAATATGTT  738

seq1  TAGTTTGAGAGTATCAACCTGGATATTTTAAACTGTCACTAATACTTTGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGAGAGTATCAACCTGGATATTTTAAACTGTCACTAATACTTTGG  788

seq1  CAACTACAGTTATGAAAATTACTCAACTATTTTATCATAACTTTTCTTCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTACAGTTATGAAAATTACTCAACTATTTTATCATAACTTTTCTTCA  838

seq1  ACTATTCATCTTTTGTGAGTTCTATGTATATAAAATTTGAAGTGCATCTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTCATCTTTTGTGAGTTCTATGTATATAAAATTTGAAGTGCATCTT  888

seq1  TTCCATTCTGTATTGAATAACAAAGTATAGCAATTAATACTAAATCAGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTCTGTATTGAATAACAAAGTATAGCAATTAATACTAAATCAGAA  938

seq1  TGAATGTATAAAACCAGTCTAGTAGGCAAAATAGTCCCTCTTTATCCCTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTATAAAACCAGTCTAGTAGGCAAAATAGTCCCTCTTTATCCCTT  988

seq1  TCTCCATTTTTACCCTCAGGAAGATGTCTGAGGATAAATGAAAATGGTGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATTTTTACCCTCAGGAAGATGTCTGAGGATAAATGAAAATGGTGC  1038

seq1  ACTACATGTTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACATCATGAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACATGTTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACATCATGAC  1088

seq1  CAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCAGCTTATACTTCGATAC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCAGCTTATACTTCGATAC  1138

seq1  TGCTGTTCATCACCAAAGGAAGTCATGACTGGAATTC  1184
      |||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTCATCACCAAAGGAAGTCATGACTGGAATTC  1175