BAC Information

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BAC

Clone NameB6Ng01-137C14
Chromosome5 (Build37)
Map Location 31,797,085 - 31,962,928
singlet/doubletdoublet
Overlap geneXab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000
Upstream gene1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik
Downstream geneBre, Fosl2, LOC672217, Plb1, EG665350, LOC545743, Ppp1cb, LOC634553, LOC675983, Yes1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137C14.bB6Ng01-137C14.g
ACCDH936749DH936750
length1,1211,035
definitionDH936749|Mus musculus domesticus DNA, BAC clone: B6Ng01-137C14, 5' end.DH936750|Mus musculus domesticus DNA, BAC clone: B6Ng01-137C14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,961,796 - 31,962,928)(31,797,085 - 31,798,128)
sequence
gaattctgttcctgcaacccacatggtaggaaagaactgaatcctatagc
ctccacatgcatgcccatggtatacatgcacccacatgtatacacatatg
ttcatacatgcacaaaataaataaacacatgtaaagtaactaagtgctca
tagtaagtcaggtagagtggtatgtgctcatagtccctcctactcagaaa
ggtgaggtgggaggggttcttgagcccaggtgcttaaggccagcccagaa
aacatagcaagactcttatctcctataaaaatgaaaataatcagaatatt
atgaatctcacaaaaaacattgccaaaaaacacatttggaacacaataac
taaaccggaatgtcctggaaatgttaagattaattcttctaacacattct
gtatataatgccttcagaggatggttttacatccttagattggctttgct
tggtttagtataaatatgtagaatttcttcgtaggccagaatatcatcgt
catagtggctggagcaaatctgtttttgaattctgaagacttgaagaagg
cagccagtgtcattagccgagccaaagtgatgatatgccagctagaaata
agcccggcagcttctctggaagctctgacaatggcccgcaggagtggagg
taatgttacagatttgtcactctttctgggagagcttttatcgctgtctt
aattaacattaacctttcaagttgactaaagcattactttgtagtaaaat
attcgttcctccatctgtgagattcaccggcttgtagttcttgataatgt
taagaaaaactcacaaataggataaaaataacatgagtagcatatccgat
atccctaaatataaaacctggagtctagttagcagaatcgacctaaggta
aaacaggggcctctgaagcatgcagcaaggggacagagaaagtagatgtt
cccactgtctctgtctacgagtcaaaggttcattctagccacgtctgctg
gtgcacaccttaatcccacactcagaggcagagcaataggactcaatgag
ttcaaggcagctgcactactacataaagaagctcagacggcaggcttacc
agagaaaccctgtcttcaaaa
gaattcagagagcccgcaggccgccgggcgatccctgagtggtgggcgtg
gctgaggaaagatggcggcgcccgtggctccatccgaaccccaggcttcc
cgggctcctcagccccccgtgtgtctgttggtgttgggaatggcgggatc
cgggaaaactacctttgtacaggtgacgtgcaccgtgcagaagcggtagt
ggcgcctcaggcccgggaagaagggaggaagttgtctggggaatctgcgg
gtccgggcgcgtggttttctcgagctgtcctctgactcctttccttcccg
aagcctcgaaccctagcctgggtcacttgaggccggctcctgggcaacct
taatgcacacttggtacagctgaacttgtcttgctgcgaattggcagctt
tccgaaggcccgggcctaaagagtaggggagtgtaacgtctactactctg
gtttgcgtgaagagttgtgaaagaatcacttcgttcgacctaccacgttc
taagctctgagagtacagcggcaatgagatcgacagggttcttgctttca
cggagtgagtgttttagtggaggagacagaggaagaaaaacccttggagg
ggcagagttagcgaagccgtgacggagaatagggagacaggtactggaac
tagatgggtttttaaactcttcagtgttgaacacgctgagggaagaagga
gattgttacagattttataagcatggtcagtaaagggatgggaattctcg
gggcccgttcctatcctttggtcatcaccctccaaccctggctccttgtt
tttgcagaggctcacaggacacctgcacaacaaaggctgtccaccgtatg
taatcaacctggacccagctgtgcatgaagtcccctttcccgccattatg
gtgagtgcctgcctgcctgcttgctgatttccttttcttgtcttttcttc
tagctagctactatgtactttctttctggggatttgcctgagttccggac
agcttcctgctatgcgaattatcccttcttatgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_31961796_31962928
seq2: B6Ng01-137C14.b_48_1168 (reverse)

seq1  TTTTG-AGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCTGGAGC-TCTCT  48
      ||||| |||||||||||||||| |||  ||| || |||| |||| ||| |
seq2  TTTTGAAGACAGGGTTTCTCTG-GTAAGCCT-GCCGTCT-GAGCTTCTTT  47

seq1  ATGTAGTTAGTGCAGGCTGGCCTTGAACTCATTGAGGTCCTATTGCTTCT  98
      |||||| ||||||| ||| |||||||||||||||| |||||||||| |||
seq2  ATGTAG-TAGTGCA-GCT-GCCTTGAACTCATTGA-GTCCTATTGC-TCT  92

seq1  GCCTCCTGAGTGTTGGGATTAAAGGTGTGCACCAGCAGACGTGGCTAAGA  148
      |||| ||||||| ||||||| ||||||||||||||||||||||||| |||
seq2  GCCT-CTGAGTG-TGGGATT-AAGGTGTGCACCAGCAGACGTGGCT-AGA  138

seq1  ATGAACCTTTGACTCGTAGACAGGAGACAGTGGGAACATCCTACTTTCTC  198
      |||||||||||||||||||||| |||||||||||||||| ||||||||||
seq2  ATGAACCTTTGACTCGTAGACA-GAGACAGTGGGAACAT-CTACTTTCTC  186

seq1  TGTCCCCTTGCTGCATGCTTCAGAGGCCCCTGTTATACCTTAGGTCGATT  248
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGTCCCCTTGCTGCATGCTTCAGAGGCCCCTGTTTTACCTTAGGTCGATT  236

seq1  CTGCTAACTAGACTCCAGGTTTTATATTTAGGGATATCGGATATGCTACT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAACTAGACTCCAGGTTTTATATTTAGGGATATCGGATATGCTACT  286

seq1  CATGTTATTTTTATCCTATTTGTGAGTTTTTCTTAACATTATCAAGAACT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTATTTTTATCCTATTTGTGAGTTTTTCTTAACATTATCAAGAACT  336

seq1  ACAAGCCGGTGAATCTCACAGATGGAGGAACGAATATTTTACTACAAAGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCGGTGAATCTCACAGATGGAGGAACGAATATTTTACTACAAAGT  386

seq1  AATGCTTTAGTCAACTTGAAAGGTTAATGTTAATTAAGACAGCGATAAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTTAGTCAACTTGAAAGGTTAATGTTAATTAAGACAGCGATAAAA  436

seq1  GCTCTCCCAGAAAGAGTGACAAATCTGTAACATTACCTCCACTCCTGCGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCCAGAAAGAGTGACAAATCTGTAACATTACCTCCACTCCTGCGG  486

seq1  GCCATTGTCAGAGCTTCCAGAGAAGCTGCCGGGCTTATTTCTAGCTGGCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTGTCAGAGCTTCCAGAGAAGCTGCCGGGCTTATTTCTAGCTGGCA  536

seq1  TATCATCACTTTGGCTCGGCTAATGACACTGGCTGCCTTCTTCAAGTCTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCACTTTGGCTCGGCTAATGACACTGGCTGCCTTCTTCAAGTCTT  586

seq1  CAGAATTCAAAAACAGATTTGCTCCAGCCACTATGACGATGATATTCTGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTCAAAAACAGATTTGCTCCAGCCACTATGACGATGATATTCTGG  636

seq1  CCTACGAAGAAATTCTACATATTTATACTAAACCAAGCAAAGCCAATCTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACGAAGAAATTCTACATATTTATACTAAACCAAGCAAAGCCAATCTA  686

seq1  AGGATGTAAAACCATCCTCTGAAGGCATTATATACAGAATGTGTTAGAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGTAAAACCATCCTCTGAAGGCATTATATACAGAATGTGTTAGAAG  736

seq1  AATTAATCTTAACATTTCCAGGACATTCCGGTTTAGTTATTGTGTTCCAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATCTTAACATTTCCAGGACATTCCGGTTTAGTTATTGTGTTCCAA  786

seq1  ATGTGTTTTTTGGCAATGTTTTTTGTGAGATTCATAATATTCTGATTATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTTTTTGGCAATGTTTTTTGTGAGATTCATAATATTCTGATTATT  836

seq1  TTCATTTTTATAGGAGATAAGAGTCTTGCTATGTTTTCTGGGCTGGCCTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTTATAGGAGATAAGAGTCTTGCTATGTTTTCTGGGCTGGCCTT  886

seq1  AAGCACCTGGGCTCAAGAACCCCTCCCACCTCACCTTTCTGAGTAGGAGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCTGGGCTCAAGAACCCCTCCCACCTCACCTTTCTGAGTAGGAGG  936

seq1  GACTATGAGCACATACCACTCTACCTGACTTACTATGAGCACTTAGTTAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATGAGCACATACCACTCTACCTGACTTACTATGAGCACTTAGTTAC  986

seq1  TTTACATGTGTTTATTTATTTTGTGCATGTATGAACATATGTGTATACAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATGTGTTTATTTATTTTGTGCATGTATGAACATATGTGTATACAT  1036

seq1  GTGGGTGCATGTATACCATGGGCATGCATGTGGAGGCTATAGGATTCAGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGCATGTATACCATGGGCATGCATGTGGAGGCTATAGGATTCAGT  1086

seq1  TCTTTCCTACCATGTGGGTTGCAGGAACAGAATTC  1133
      |||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTACCATGTGGGTTGCAGGAACAGAATTC  1121

seq1: chr5_31797085_31798128
seq2: B6Ng01-137C14.g_68_1102

seq1  GAATTCAGAGAGCCCGCAGGCCGCCGGGCGATCCCTGAGTGGTGGGCGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGAGCCCGCAGGCCGCCGGGCGATCCCTGAGTGGTGGGCGTG  50

seq1  GCTGAGGAAAGATGGCGGCGCCCGTGGCTCCATCCGAACCCCAGGCTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGAAAGATGGCGGCGCCCGTGGCTCCATCCGAACCCCAGGCTTCC  100

seq1  CGGGCTCCTCAGCCCCCCGTGTGTCTGTTGGTGTTGGGAATGGCGGGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCTCCTCAGCCCCCCGTGTGTCTGTTGGTGTTGGGAATGGCGGGATC  150

seq1  CGGGAAAACTACCTTTGTACAGGTGACGTGCACCGTGCAGAAGCGGTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAAAACTACCTTTGTACAGGTGACGTGCACCGTGCAGAAGCGGTAGT  200

seq1  GGCGCCTCAGGCCCGGGAAGAAGGGAGGAAGTTGTCTGGGGAATCTGCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCCTCAGGCCCGGGAAGAAGGGAGGAAGTTGTCTGGGGAATCTGCGG  250

seq1  GTCCGGGCGCGTGGTTTTCTCGAGCTGTCCTCTGACTCCTTTCCTTCCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGGGCGCGTGGTTTTCTCGAGCTGTCCTCTGACTCCTTTCCTTCCCG  300

seq1  AAGCCTCGAACCCTAGCCTGGGTCACTTGAGGCCGGCTCCTGGGCAACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTCGAACCCTAGCCTGGGTCACTTGAGGCCGGCTCCTGGGCAACCT  350

seq1  TAATGCACACTTGGTACAGCTGAACTTGTCTTGCTGCGAATTGGCAGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCACACTTGGTACAGCTGAACTTGTCTTGCTGCGAATTGGCAGCTT  400

seq1  TCCGAAGGCCCGGGCCTAAAGAGTAGGGGAGTGTAACGTCTACTACTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGAAGGCCCGGGCCTAAAGAGTAGGGGAGTGTAACGTCTACTACTCTG  450

seq1  GTTTGCGTGAAGAGTTGTGAAAGAATCACTTCGTTCGACCTACCACGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCGTGAAGAGTTGTGAAAGAATCACTTCGTTCGACCTACCACGTTC  500

seq1  TAAGCTCTGAGAGTACAGCGGCAATGAGATCGACAGGGTTCTTGCTTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTCTGAGAGTACAGCGGCAATGAGATCGACAGGGTTCTTGCTTTCA  550

seq1  CGGAGTGAGTGTTTTAGTGGAGGAGACAGAGGAAG-AAAACCCTTGGAGG  599
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CGGAGTGAGTGTTTTAGTGGAGGAGACAGAGGAAGAAAAACCCTTGGAGG  600

seq1  GGCAGAGTTAGCGAAGCCGTGACGGAGAATAGGGAGACAGGTACTGGAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGTTAGCGAAGCCGTGACGGAGAATAGGGAGACAGGTACTGGAAC  650

seq1  TAGATGGCTTTTTAAACTCTTCAGTGTTGAACACGCTGAGGGAAGAAGGA  699
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGGGTTTTTAAACTCTTCAGTGTTGAACACGCTGAGGGAAGAAGGA  700

seq1  GATTGTTACAGATTTTATAAGCATGGTCAGTAAAGGGATGGGAATTCTCG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTTACAGATTTTATAAGCATGGTCAGTAAAGGGATGGGAATTCTCG  750

seq1  GGGCCCGTTCCTATCCTTTGGTCATCACCCTCCAACCCTGGCTCCTTGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCGTTCCTATCCTTTGGTCATCACCCTCCAACCCTGGCTCCTTGTT  800

seq1  TTTGCAGAGGCTCACAGGACACCTGCACAACAAAGGCTGTCCACCGTATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGAGGCTCACAGGACACCTGCACAACAAAGGCTGTCCACCGTATG  850

seq1  TAATCAACCTGGACCCAGCTGTGCATGAAGTCCCCTTTCCCGCCAATATT  899
      ||||||||||||||||||||||||||||||||||||||||||||| || |
seq2  TAATCAACCTGGACCCAGCTGTGCATGAAGTCCCCTTTCCCGCCATTA-T  899

seq1  GGTGAGTGCCTGCCTGCCTGCTTGCTTGATTTCCTTTTCTTGTCTTTTCT  949
      ||||||||||||||||||||||||| ||||||||||||||||||||||| 
seq2  GGTGAGTGCCTGCCTGCCTGCTTGC-TGATTTCCTTTTCTTGTCTTTTC-  947

seq1  TTCTAAGCTAGCTAACTATGTACTTTTCTTTTCTGTGGATTTGCCTGAGT  999
      |||| |||||||| ||||||||||||   |||||| ||||||||||||||
seq2  TTCT-AGCTAGCT-ACTATGTACTTT--CTTTCTGGGGATTTGCCTGAGT  993

seq1  TCCGGAACAGGCTTCTTGCTTATGCAGATTTATCCC-TCTTATGCA  1044
      ||||| ||| ||||| ||| ||||| || ||||||| |||||||||
seq2  TCCGG-ACA-GCTTCCTGC-TATGC-GAATTATCCCTTCTTATGCA  1035