BAC Information

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BAC

Clone NameB6Ng01-137F04
Chromosome5 (Build37)
Map Location 117,887,862 - 118,051,734
singlet/doubletdoublet
Overlap geneKsr2
Upstream gene1500001A10Rik, LOC433943, Gm1684, LOC665073, Suds3, Taok3, Pebp1, LOC100042313, LOC100039359, BC023744, LOC667175, Wsb2, Rfc5
Downstream geneNos1, Fbxo21, Tesc, Fbxw8, Hrk, Tmem118, 2410131K14Rik, LOC665162, Thrap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137F04.bB6Ng01-137F04.g
ACCDH936869DH936870
length591970
definitionDH936869|Mus musculus domesticus DNA, BAC clone: B6Ng01-137F04, 5' end.DH936870|Mus musculus domesticus DNA, BAC clone: B6Ng01-137F04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,887,862 - 117,888,452)(118,050,755 - 118,051,734)
sequence
gaattctcagctttgtcatggtgacttaatttgggtagccgttctccatt
tcccaggagagcatgagaagatatgtgactgtggagtgctgacctagtgt
gcaaagccctggatcccgtccccagtacttgtaagggggcaccataaaga
aaccaccagaagggccatgtgacggtgcttggagaggaaggccttgtggg
agagagaggggtggcgggtgtgaagaggacggccaggggcatctggaaga
gtccagagcagagagaaaagtggactggacgtggccagggagaccttgga
gagcacagaagagaggctgggaaaccttgcctttatgagaggggtggggt
ctggagcagccttggagcttgcatcatgcagaaagagggagggaggttaa
aaagggctagaggcctagcatggtggcggcggggtggggtttggataggg
actgtggccagcaaaggttttgatatgcagccacaagtatatgtccacag
agagccacatctccctcttccataggcaacggaagtgacttcttttctcg
gacaggagcccatgttacatttcccgagggatgtcggcttt
gaattctatgttctcagtaagaagaaattgggggtgaggtgggggattgg
cagcagaagtcaacagacctttttttctgtaagagtccagatagcaaatg
tcacaggcttcctggactgtctggtttccatggcaactactcaaatggac
tgtctagttcaaaagcagtcacaggtaatatgtaaacaatggagatgtgt
cctatagtctagccagctcagctctgttgctgtaacaaacaccctcatca
aaagcagcttaggagaagaaagggttcgtccggcttatacttcagctcac
agtccatcactgagagaagtcgggatgagaacttcggtggtggagccctg
aaggcaggcctgcttgctatcatcccacaaagcgtcactcagacccagag
acatggagcaagaaccatggaggatgctgcctcctgcctggaacacaggc
ttatctatcctcagctagctttcttacacagctcaggactactgcctagg
gaatggtgccatcgaactggacgctcctccaccaattcccaatcaagtca
acccccctaccacagacatgtccacagaccaatctgtcccaggaaattct
tcaattgagactctctacctaaatatctcaagttgacaattacagttaac
ccggacacgacggctgttcccctataaaactttatagactgaagagactt
gggccggatttaccgtgagctaaggtttggtggctccagatcaaaagaac
agttgtttaaaatcccaacgagtactgatacataagaatgtaaactgccc
agcaacacacatagtacgagatttcatacataaacagtattaaacataat
tgtgaataaatgcacgtctattttgcttggatattactgtatattatgat
gtacttgaggagtataaaggttatggtgaagagtgggatgagaatctttt
ccatgaagcctcactgcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_117887862_117888452
seq2: B6Ng01-137F04.b_48_638

seq1  GAATTCTCAGCTTTGTCATGGTGACTTAA-TGGGGTAGCCGTTCTCCATT  49
      ||||||||||||||||||||||||||||| | ||||||||||||||||||
seq2  GAATTCTCAGCTTTGTCATGGTGACTTAATTTGGGTAGCCGTTCTCCATT  50

seq1  TCCCAGGAGAGCATGAGAAGATATGTGACTGTGGAGTGCTGACCTAGTGT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGAGAGCATGAGAAGATATGTGACTGTGGAGTGCTGACCTAGTGT  100

seq1  GCAAAGCCCTGGATCCCGTCCCCAGTACTTGTAAGGGGGCACCATAAAGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCCCTGGATCCCGTCCCCAGTACTTGTAAGGGGGCACCATAAAGA  150

seq1  AACCACCAGAAGGGCCATGTGACGGTGCTTGGAGAGGAAGGCCTTGTGGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCAGAAGGGCCATGTGACGGTGCTTGGAGAGGAAGGCCTTGTGGG  200

seq1  AGAGAGAGGGGTGGCGGGTGTGAAGAGGACGGCCAGGGGCATCTGGAAGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGGGGTGGCGGGTGTGAAGAGGACGGCCAGGGGCATCTGGAAGA  250

seq1  GTCCAGAGCAGAGAGAAAAGTGGACTGGACGTGGCCAGGGAGACCTTGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGAGCAGAGAGAAAAGTGGACTGGACGTGGCCAGGGAGACCTTGGA  300

seq1  GAGCACAGAAGAGAGGCTGGGAAACCTTGCCTTTATGAGAGGGGTGGGGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACAGAAGAGAGGCTGGGAAACCTTGCCTTTATGAGAGGGGTGGGGT  350

seq1  CTGGAGCAGCCTTGGAGCTTGCATCATGCAGAAAGAGGGAGGGAGGTTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCAGCCTTGGAGCTTGCATCATGCAGAAAGAGGGAGGGAGGTTAA  400

seq1  AAAGGGCTAGAGGCCTAGCATGGTGGCGGCGGGGTGGGGTTTGGATAGGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCTAGAGGCCTAGCATGGTGGCGGCGGGGTGGGGTTTGGATAGGG  450

seq1  ACTGTGGCCAGCAAAGGTTTTGATATGCAGCCACAAGTATATGTCCACAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGCCAGCAAAGGTTTTGATATGCAGCCACAAGTATATGTCCACAG  500

seq1  AGAGCCACATCTCCCTCTTCCAGAGGCAACGGAAGTGACTTCTTTTCTCG  549
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGAGCCACATCTCCCTCTTCCATAGGCAACGGAAGTGACTTCTTTTCTCG  550

seq1  GACAGGAGCCCATGTTAACATTTCCTGAGGGATGTCGGCTTT  591
      |||||||||||||||| |||||||| ||||||||||||||||
seq2  GACAGGAGCCCATGTT-ACATTTCCCGAGGGATGTCGGCTTT  591

seq1: chr5_118050755_118051734
seq2: B6Ng01-137F04.g_68_1037 (reverse)

seq1  CAGGCAGTGAGCCTTTTCATTGTAAAAGATTCTCATCACACCTCCTTCAC  50
      ||||||||||| |  |||| || |||||||||||||| |||   ||||||
seq2  CAGGCAGTGAGGC--TTCA-TGGAAAAGATTCTCATCCCAC--TCTTCAC  45

seq1  CATAAACCTTTATACTCCTCAAGTACATCATAAATATACAGTGAATATTC  100
      ||| ||||||||||||||||||||||||||| |||||||||| ||||| |
seq2  CAT-AACCTTTATACTCCTCAAGTACATCAT-AATATACAGT-AATATCC  92

seq1  AAGCAAAATAGACATGCATTTATTCACATTTATGTTTAAATACTGTTTAT  150
      ||||||||||||| |||||||||||||| |||||||| ||||||||||||
seq2  AAGCAAAATAGACGTGCATTTATTCACAATTATGTTT-AATACTGTTTAT  141

seq1  GTATGAAATCTCGTACTATGTGTGTTGCTTGGCAGTTTACATTCTTTATG  200
      ||||||||||||||||||||||||||||| |||||||||||||| |||||
seq2  GTATGAAATCTCGTACTATGTGTGTTGCTGGGCAGTTTACATTC-TTATG  190

seq1  TATCAGTACTCGTTGGGATTTTAAACAACTGTTCTTTTGATCTGGAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTACTCGTTGGGATTTTAAACAACTGTTCTTTTGATCTGGAGCCA  240

seq1  CCAAACCTTAGCTCACGGTAAATCCGGCCCAAGTCTCTTCAGTCTATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCTTAGCTCACGGTAAATCCGGCCCAAGTCTCTTCAGTCTATAAA  290

seq1  GTTTTATAGGGGAACAGCCGTCGTGTCCGGGTTAACTGTAATTGTCAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATAGGGGAACAGCCGTCGTGTCCGGGTTAACTGTAATTGTCAACT  340

seq1  TGAGATATTTAGGTAGAGAGTCTCAATTGAAGAATTTCCTGGGACAGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATATTTAGGTAGAGAGTCTCAATTGAAGAATTTCCTGGGACAGATT  390

seq1  GGTCTGTGGACATGTCTGTGGTAGGGGGGTTGACTTGATTGGGAATTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGTGGACATGTCTGTGGTAGGGGGGTTGACTTGATTGGGAATTGGT  440

seq1  GGAGGAGCGTCCAGTTCGATGGCACCATTCCCTAGGCAGTAGTCCTGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGCGTCCAGTTCGATGGCACCATTCCCTAGGCAGTAGTCCTGAGC  490

seq1  TGTGTAAGAAAGCTAGCTGAGGATAGATAAGCCTGTGTTCCAGGCAGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAAGAAAGCTAGCTGAGGATAGATAAGCCTGTGTTCCAGGCAGGAG  540

seq1  GCAGCATCCTCCATGGTTCTTGCTCCATGTCTCTGGGTCTGAGTGACGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATCCTCCATGGTTCTTGCTCCATGTCTCTGGGTCTGAGTGACGCT  590

seq1  TTGTGGGATGATAGCAAGCAGGCCTGCCTTCAGGGCTCCACCACCGAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGATGATAGCAAGCAGGCCTGCCTTCAGGGCTCCACCACCGAAGT  640

seq1  TCTCATCCCGACTTCTCTCAGTGATGGACTGTGAGCTGAAGTATAAGCCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCCCGACTTCTCTCAGTGATGGACTGTGAGCTGAAGTATAAGCCG  690

seq1  GACGAACCCTTTCTTCTCCTAAGCTGCTTTTGATGAGGGTGTTTGTTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGAACCCTTTCTTCTCCTAAGCTGCTTTTGATGAGGGTGTTTGTTACA  740

seq1  GCAACAGAGCTGAGCTGGCTAGACTATAGGACACATCTCCATTGTTTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAGAGCTGAGCTGGCTAGACTATAGGACACATCTCCATTGTTTACA  790

seq1  TATTACCTGTGACTGCTTTTGAACTAGACAGTCCATTTGAGTAGTTGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACCTGTGACTGCTTTTGAACTAGACAGTCCATTTGAGTAGTTGCCA  840

seq1  TGGAAACCAGACAGTCCAGGAAGCCTGTGACATTTGCTATCTGGACTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACCAGACAGTCCAGGAAGCCTGTGACATTTGCTATCTGGACTCTT  890

seq1  ACAGAAAAAAAGGTCTGTTGACTTCTGCTGCCAATCCCCCACCTCACCCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAAAAAGGTCTGTTGACTTCTGCTGCCAATCCCCCACCTCACCCC  940

seq1  CAATTTCTTCTTACTGAGAACATAGAATTC  980
      ||||||||||||||||||||||||||||||
seq2  CAATTTCTTCTTACTGAGAACATAGAATTC  970