BAC Information

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BAC

Clone NameB6Ng01-137I08
Chromosome5 (Build37)
Map Location 72,889,954 - 73,021,465
singlet/doubletdoublet
Overlap geneCorin, Nfxl1, Zar1, EG545758, Cnga1, LOC384275
Upstream gene4930503B16Rik, Gabra4, Gabrb1, LOC666545, Commd8, Atp10d
Downstream geneNpal1, Txk, Tec, Slain2, Slc10a4, LOC667127, Fryl, Ociad1, Ociad2, LOC667154, LOC100042205, C130090K23Rik, LOC627733, Dcun1d4, BC031901
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137I08.bB6Ng01-137I08.g
ACCDH937019DH937020
length1,1241,046
definitionDH937019|Mus musculus domesticus DNA, BAC clone: B6Ng01-137I08, 5' end.DH937020|Mus musculus domesticus DNA, BAC clone: B6Ng01-137I08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,889,954 - 72,891,090)(73,020,415 - 73,021,465)
sequence
gaattcttccaagatctcacactcggcttctatcccccacccctgggtaa
ctatgttgtcctagttggagaaagtcacaccaaactagtcacaatatcga
tttttcaccctataagaggtcacggagtccccaggtatgaggtcctggtg
ttgttcgactggacacagtggtacctgcctgtaatcccagtacttgggag
gcagggcaggaggatcacaaattcaaggccagactcagtgctacatgtgg
accttgagtccagcctgggctccatgagaccctgtttcagaaaatcagag
gcaaaaccagaagtctcctgatgtcatcttctctaattggctgcaggggc
attgtaatgacatgacacctctgtggtttcagagagaaatgtggtgcacg
gtggcagagggcttttctttagaactcccctcagctactggaactcttca
aatgtcgctgacctaaaggaccctgaactaagcaagcatccaaatggcct
ttaagcctgcctctttattttcagtccccactcctgagtcagccaggtgg
ctcaggaccatgccttctccatgagtgtcacactgagttctttacagtat
cagcacttctggtgaacggtgacacgggtctcctgcaggacctctccgta
ccttctgccagtctaattgggaacaaccatgcatgctctgagggactgga
tataaaaaaaacgtcccacagaagaactgacgggatagaacttcaccagc
gttcggcaagggctgggagtgagacagagagagcagcctgtgccccaagg
catcatggtcctctttcctaaaagctagggaaaatcttggggtagtaaca
accgggaagggccccacaactcaatgctcagagctcccttcagcaagaga
gctctatatacacaaagcatcatcttcctcccacagtgaccgcttgtctg
caagagtaataaccccgatgagcattacttactcggaaagcatatttggc
tgagcagatgagacagcttaggagtaagaaatgcaggcacatttaaaggc
acatcatatggggtcggttaagctgccaatctgtgttgccctgaaaagtg
ccagatatgtaaggaggtcatgtg
gaattccagcaggagctcagtgtgtggggcaagaagagacaggtggtgag
tcagggtactgagtggcctggatgggccttcactatggactggccttgta
caatctgtgttcttcagattaagtcatcgttcctgcattgtgacctgtga
tggttgttttttgtcaaattgacacaaatctcaatatatttaagaagagg
aaatctcaactaaggaattggtgtggcaatatctgttgggcaatttttta
attgctgattgatgtgggagagcccaggccctgtaggcagtgccatccct
gagctggtggccatcctaggtgctgaagaaagcagcctgagcaagacata
agagcaagccagtaagcagcactccccccatgtaccagtcctgaagtgag
ttctaggcctgactttctgggatgatgagactgcgagctacaagatgaaa
taagatcgttcctccccaagatgctcttgttcacgatgttttatcacagc
aatagaaagatagctaagaccatttcctaataatgtcttatcctccacat
ctctgagtcagtaacatcactatgttcctgtataaaccactgtatgaggt
tttatagagttctgaccaattactaagacccaaatacttcatcggtgaag
gaaccagtgtggctcaagttgaatgatctcttgggaatggaagctagaat
tggagtctgggatgaaggtaggagctttcaaacaacttgtatacatgtag
gaatagggttgatgaccaatattagagatcaagttgagattctgtagcaa
gaattagtaatgcaaataatctactttatcctctacacagctaccagatt
ggcctttctaaaattcatgtcagatgattgccactctctttctttaaatc
ttcagtgtgtggggaaatatttttaaaaagaactgcagttctcacgctac
ctctgacaggggcaggcacatggctttagcggggttgttctcatcttgta
atgctcttggcttgggctccagacgtgtccaccacttgctattttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_72889954_72891090
seq2: B6Ng01-137I08.b_48_1171

seq1  GAATTCTTCCAAGATCTCACACTCGGCTTCTATCCCCCACCCCTGGGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCAAGATCTCACACTCGGCTTCTATCCCCCACCCCTGGGTAA  50

seq1  CTATGTTGTCCTAGTTGGAGAAAGTCACACCAAACTAGTCACAATATCGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTTGTCCTAGTTGGAGAAAGTCACACCAAACTAGTCACAATATCGA  100

seq1  TTTTTCACCCTATAAGAGGTCACGGAGTCCCCAGGTATGAGGTCCTGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCACCCTATAAGAGGTCACGGAGTCCCCAGGTATGAGGTCCTGGTG  150

seq1  TTGTTCGACTGGACACAGTGGTACCTGCCTGTAATCCCAGTACTTGGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCGACTGGACACAGTGGTACCTGCCTGTAATCCCAGTACTTGGGAG  200

seq1  GCAGGGCAGGAGGATCACAAATTCAAGGCCAGACTCAGTGCTACATGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCAGGAGGATCACAAATTCAAGGCCAGACTCAGTGCTACATGTGG  250

seq1  ACCTTGAGTCCAGCCTGGGCTCCATGAGACCCTGTTTCAGAAAATCAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGAGTCCAGCCTGGGCTCCATGAGACCCTGTTTCAGAAAATCAGAG  300

seq1  GCAAAACCAGAAGTCTCCTGATGTCATCTTCTCTAATTGGCTGCAGGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACCAGAAGTCTCCTGATGTCATCTTCTCTAATTGGCTGCAGGGGC  350

seq1  ATTGTAATGACATGACACCTCTGTGGTTTCAGAGAGAAATGTGGTGCACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAATGACATGACACCTCTGTGGTTTCAGAGAGAAATGTGGTGCACG  400

seq1  GTGGCAGAGGGCTTTTCTTTAGAACTCCCCTCAGCTACTGGAACTCTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGAGGGCTTTTCTTTAGAACTCCCCTCAGCTACTGGAACTCTTCA  450

seq1  AATGTCGCTGACCTAAAGGACCCTGAACTAAGCAAGCATCCAAATGGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCGCTGACCTAAAGGACCCTGAACTAAGCAAGCATCCAAATGGCCT  500

seq1  TTAAGCCTGCCTCTTTATTTTCAGTCCCCACTCCTGAGTCAGCCAGGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCCTGCCTCTTTATTTTCAGTCCCCACTCCTGAGTCAGCCAGGTGG  550

seq1  CTCAGGACCATGCCTTCTCCATGAGTGTCACACTGAGTTCTTTACAGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGACCATGCCTTCTCCATGAGTGTCACACTGAGTTCTTTACAGTAT  600

seq1  CAGCACTTCTGGTGAACGGTGACACGGGTCTCCTGCAGGACCTCTCCGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTTCTGGTGAACGGTGACACGGGTCTCCTGCAGGACCTCTCCGTA  650

seq1  CCTTCTGCCAGTCTAATTGGGAACAACCATGCATGCTCTGAGGGACTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGCCAGTCTAATTGGGAACAACCATGCATGCTCTGAGGGACTGGA  700

seq1  TATAAAAAAAACGTCCCACAGAAGAACTGACGGGATAGAACTTCACCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAAAAACGTCCCACAGAAGAACTGACGGGATAGAACTTCACCAGC  750

seq1  GTTCGGCAAGGGCTGGGAGTGAGACAGAGAGAGCAGCCTGTGCCCCAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGGCAAGGGCTGGGAGTGAGACAGAGAGAGCAGCCTGTGCCCCAAGG  800

seq1  CATCATGGTCCTCTTTCCTAAAAGCTAGGGAAAATCTTGGGGTAGTAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGGTCCTCTTTCCTAAAAGCTAGGGAAAATCTTGGGGTAGTAACA  850

seq1  ACCGGGAAAGGGCCCCACAACTCAATGCTCAGAGCTCCCCTCAGCAAGAG  900
      |||||| |||||||||||||||||||||||||||||||| ||||||||||
seq2  ACCGGG-AAGGGCCCCACAACTCAATGCTCAGAGCTCCCTTCAGCAAGAG  899

seq1  AGCTCTTATATACACAAAGCATCATCTTCCTCCCACAGTGACCGCTTGTC  950
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTC-TATATACACAAAGCATCATCTTCCTCCCACAGTGACCGCTTGTC  948

seq1  TGCAAGAGTAATAACCCCGATGAGCATTACTTACTC-GAAAGCATATTTG  999
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGCAAGAGTAATAACCCCGATGAGCATTACTTACTCGGAAAGCATATTTG  998

seq1  CCTGAGCAGAATGAGAACAAGCTTTTAGGAAGTAAGAAATGCAGGCACA-  1048
       |||||||| ||||||   |||  ||||| ||||||||||||||||||| 
seq2  GCTGAGCAG-ATGAGA--CAGC--TTAGG-AGTAAGAAATGCAGGCACAT  1042

seq1  TTAAAGGCACAATCATATGGGGTCGGGGTAAGCTGCCAATCCTGTG-TGC  1097
      |||||||||| ||||||||||||| || |||||||||||| ||||| |||
seq2  TTAAAGGCAC-ATCATATGGGGTC-GGTTAAGCTGCCAAT-CTGTGTTGC  1089

seq1  CCTGAAAACAGTAGCACAGATATGTAGAGGAGGGCATGTG  1137
      |||||||  ||| || |||||||||| |||||| ||||||
seq2  CCTGAAA--AGT-GC-CAGATATGTA-AGGAGGTCATGTG  1124

seq1: chr5_73020415_73021465
seq2: B6Ng01-137I08.g_68_1113 (reverse)

seq1  GAAATTAGCAAGTTGGGTGGACACGTCTTGGAGCCCCAGGCCAGAGCATC  50
      |||| ||||||||  |||||||||||| |||||||| || | ||||||| 
seq2  GAAAATAGCAAGT--GGTGGACACGTC-TGGAGCCCAAGCCAAGAGCAT-  46

seq1  TACTGAGATGAGAAC-ACCCCGCTAAAGCCATGTGGCCTGCCCCTGTCAG  99
      |||  |||||||||| |||||||||||||||||| |||||||||||||||
seq2  TAC-AAGATGAGAACAACCCCGCTAAAGCCATGT-GCCTGCCCCTGTCAG  94

seq1  GCGTAGCGTGGGAACTTGCAGTTCTTTTTTAAAATATTTCCCACAACACT  149
        |||||||| |||| ||||||||||||| ||||||||||||   |||||
seq2  AGGTAGCGTGAGAAC-TGCAGTTCTTTTTAAAAATATTTCCCCACACACT  143

seq1  GAAGATTTTAAAGAAGAGAGTGGC-ATCATCTGACATGAATTTTAGAAAG  198
      |||||||| ||  ||||||||||| |||||||||||||||||||||||||
seq2  GAAGATTTAAAGAAAGAGAGTGGCAATCATCTGACATGAATTTTAGAAAG  193

seq1  GCCAATCTGGTAGCTGTGTAGAGGATAAAGTAGATTATTTGCATTACTAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATCTGGTAGCTGTGTAGAGGATAAAGTAGATTATTTGCATTACTAA  243

seq1  TTCTTGCTACAGAATCTCAACTTGATCTCTAATATTGGTCATCAACCCTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCTACAGAATCTCAACTTGATCTCTAATATTGGTCATCAACCCTA  293

seq1  TTCCTACATGTATACAAGTTGTTTGAAAGCTCCTACCTTCATCCCAGACT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACATGTATACAAGTTGTTTGAAAGCTCCTACCTTCATCCCAGACT  343

seq1  CCACTTCTAGCTTCCATTCCCAAGAGATCATTCAACTTGAGCCACACTGG  398
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTCTAGCTTCCATTCCCAAGAGATCATTCAACTTGAGCCACACTGG  393

seq1  TTCCTTCACCGATGAAGTATTTGGGTCTTAGTAATTGGTCAGAACTCTAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCACCGATGAAGTATTTGGGTCTTAGTAATTGGTCAGAACTCTAT  443

seq1  AAAACCTCATACAGTGGTTTATACAGGAACATAGTGATGTTACTGACTCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTCATACAGTGGTTTATACAGGAACATAGTGATGTTACTGACTCA  493

seq1  GAGATGTGGAGGATAAGACATTATTAGGAAATGGTCTTAGCTATCTTTCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTGGAGGATAAGACATTATTAGGAAATGGTCTTAGCTATCTTTCT  543

seq1  ATTGCTGTGATAAAACATCGTGAACAAGAGCATCTTGGGGAGGAACGATC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGTGATAAAACATCGTGAACAAGAGCATCTTGGGGAGGAACGATC  593

seq1  TTATTTCATCTTGTAGCTCGCAGTCTCATCATCCCAGAAAGTCAGGCCTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCATCTTGTAGCTCGCAGTCTCATCATCCCAGAAAGTCAGGCCTA  643

seq1  GAACTCACTTCAGGACTGGTACATGGGGGGAGTGCTGCTTACTGGCTTGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACTTCAGGACTGGTACATGGGGGGAGTGCTGCTTACTGGCTTGC  693

seq1  TCTTATGTCTTGCTCAGGCTGCTTTCTTCAGCACCTAGGATGGCCACCAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGTCTTGCTCAGGCTGCTTTCTTCAGCACCTAGGATGGCCACCAG  743

seq1  CTCAGGGATGGCACTGCCTACAGGGCCTGGGCTCTCCCACATCAATCAGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGATGGCACTGCCTACAGGGCCTGGGCTCTCCCACATCAATCAGC  793

seq1  AATTAAAAAATTGCCCAACAGATATTGCCACACCAATTCCTTAGTTGAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAAAATTGCCCAACAGATATTGCCACACCAATTCCTTAGTTGAGA  843

seq1  TTTCCTCTTCTTAAATATATTGAGATTTGTGTCAATTTGACAAAAAACAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTTCTTAAATATATTGAGATTTGTGTCAATTTGACAAAAAACAA  893

seq1  CCATCACAGGTCACAATGCAGGAACGATGACTTAATCTGAAGAACACAGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCACAGGTCACAATGCAGGAACGATGACTTAATCTGAAGAACACAGA  943

seq1  TTGTACAAGGCCAGTCCATAGTGAAGGCCCATCCAGGCCACTCAGTACCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACAAGGCCAGTCCATAGTGAAGGCCCATCCAGGCCACTCAGTACCC  993

seq1  TGACTCACCACCTGTCTCTTCTTGCCCCACACACTGAGCTCCTGCTGGAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCACCACCTGTCTCTTCTTGCCCCACACACTGAGCTCCTGCTGGAA  1043

seq1  TTC  1051
      |||
seq2  TTC  1046