BAC Information

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BAC

Clone NameB6Ng01-138H11
Chromosome5 (Build37)
Map Location 50,004,462 - 50,151,857
singlet/doubletdoublet
Overlap genenone
Upstream geneKcnip4, LOC100041668, LOC100041659, EG433885
Downstream geneLOC666223, Gpr125, EG637307, LOC100041015, LOC242987
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138H11.bB6Ng01-138H11.g
ACCDH937719DH937720
length1,1461,111
definitionDH937719|Mus musculus domesticus DNA, BAC clone: B6Ng01-138H11, 5' end.DH937720|Mus musculus domesticus DNA, BAC clone: B6Ng01-138H11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,150,705 - 50,151,857)(50,004,462 - 50,005,599)
sequence
gaattctttgtggaattaatagatgaataaaaaagagagagcatattact
ttgaaaaggtggaaaaggatgtgtgcttcttcatcttggagaaagttggg
attcctatcaggacgaataatttatctcttgctgtgacaaatactgtctt
gaggtctttcaggttggaatatattgtttctctccttggccatggtctga
aaataatgatcttcatatttcaagaaattagccactatacacatcagctt
tgtaaaaatggaagtgatagaagattttgcatcatttgcctttatttttg
tactgcttattttattagattctttttctttaaaatgagaacatgccatc
ctagaagacagagagactctcctacaactcaggagtcaattcagacttac
aaggctcaacattacaccttgtggaagattcatgaagatggatatcaata
gagaattgctggggaagggataattgtgtcctgtgaatcttcctttaagt
tgtgcagatttttaaggacacagctctcctgagtcactatctcagtggca
aggattttcagtgatgcatgtgctctcacactcctgtaagtaattccaat
gcattggttaaccatgctaaactcaggcaggattgcttatttggtcgcct
gattgtgtattatcatagatatttgtgtttatgttttcccatggaacatc
acacaaaggaaagaacaggatacttggacaggatggaaaagaggaaagat
agaaatcacaagagaagacagagaagcaagcaagaaaaggttccaacaga
agacttgccaaccaaatgtttgtttttagaggaaatgagttagatggtag
gacagtgatggctgatgctgaggcctcttttggcatctttggtctttgaa
accccaagtttcaatacaaaacttgatacacccagcctgagtgagtcact
gtgagcagaggaaggaactgagtgtatcactaggagaggatggtgaaaat
agcagaaagtttagggagagtagaatgtactgagaatcatcagaatagaa
gaacatgtgaatgctgaaatctatttcagatctttggaggcctcagaaca
gtgtgctttgcccttcacacaaatgtctacattgaataggacatga
gaattccaactcttggccaaatctattctacgaatcaggtcatgtgtgca
gggaaggtccaaatagttgggagtgatgctgagattctaggagatctgtc
attatttacttctatggatactgatgatctacctatagcctgtgcagacg
tttaacctgcagatcaacacgaccacaacaccctccttgttatgaatagg
aaacaactacttctcaaacaatgccatgcttatctttgctatagaaaggg
ccccaaagccctcccagaaattgcatctatttccagctgaagttcatatt
tcttgcagcccagttatgttccatgtacagtaactacctttaatatacca
aggaataaaaaagcagtttgctatgcaatgaagtaaatgtgtgcagttac
cttgtcattccatgttccctaggctctaagccaaaacttcagctgataaa
agctcttaattcaatagaagagctgaaatcccccatcccttgaaagtcta
aagcagaagcagttttgattttattgacttgttttattcttccatcagtt
tgtcctctaggcatggaggtactggactgtatgccaacaaaacgtttgat
tttgactctcttctccaaactttgtcaaagagcatcagctgtacttaacc
ttcgtaaacaggatctgctccacaggcaatcaaacagtgctctttcttag
atgagttgacacaacttttagtcaatgtattctacctataaactggttgg
gcactcaacttggtacacagttggtcctagttggagatcagtatgtgacc
tctcagttgatcctgccaccatgcctttactcgatcataatggactctcc
atgtctaaaattgtaaacttcaatatactctttcttctgtattgccttgg
tcatagagtcttacccaagcaatagaaaagtaccaagacatacttacatt
tcataagaatgatgagtatctttttttcttctcggttctaggatctgtat
ttcgatacatgagagatcataaacctgtcaagtctaaatgttccatagat
agtattcaagtctgatgggttctgcttcatctcagtaggcttctattgct
gcaggaacacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_50150705_50151857
seq2: B6Ng01-138H11.b_47_1192 (reverse)

seq1  TCATGTGTCTATTCAATGTAGACATTTGTGGTGAAGAGCAAAGCACAACT  50
      ||||||  ||||||||||||||||||||| |||||| ||||||||||   
seq2  TCATGT-CCTATTCAATGTAGACATTTGT-GTGAAGGGCAAAGCACA--C  46

seq1  TGTCTTGAG--CTTCAAAGATCTGAAATAGATTTCCAGCATTCACATGTT  98
      |||  ||||  || |||||||||||||||||||| |||||||||||||||
seq2  TGTTCTGAGGCCTCCAAAGATCTGAAATAGATTT-CAGCATTCACATGTT  95

seq1  C-TCTA-TCTGATGATTCTCAGTACATTCCTACTTCTTCCCTAAACTTTC  146
      | |||| ||||||||||||||||||||| |||||   |||||||||||||
seq2  CTTCTATTCTGATGATTCTCAGTACATT-CTACT--CTCCCTAAACTTTC  142

seq1  TGCTTATTTTCACCATCCTCCTCCTAGTGATAACACTCAGTTCCTTCCTC  196
      ||| ||||||||||||||| ||||||||||| ||||||||||||||||||
seq2  TGC-TATTTTCACCATCCT-CTCCTAGTGAT-ACACTCAGTTCCTTCCTC  189

seq1  TGCTCACAGTGACTCACTCAGGCTGGGTGTATCAAGTTTTGTATTGAAAC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACAGTGACTCACTCAGGCTGGGTGTATCAAGTTTTGTATTGAAAC  239

seq1  TTGGGGTTTCAAAGACCAAAGATGCCAAAAGAGGCCTCAGCATCAGCCAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGTTTCAAAGACCAAAGATGCCAAAAGAGGCCTCAGCATCAGCCAT  289

seq1  CACTGTCCTACCATCTAACTCATTTCCTCTAAAAACAAACATTTGGTTGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTCCTACCATCTAACTCATTTCCTCTAAAAACAAACATTTGGTTGG  339

seq1  CAAGTCTTCTGTTGGAACCTTTTCTTGCTTGCTTCTCTGTCTTCTCTTGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTTCTGTTGGAACCTTTTCTTGCTTGCTTCTCTGTCTTCTCTTGT  389

seq1  GATTTCTATCTTTCCTCTTTTCCATCCTGTCCAAGTATCCTGTTCTTTCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTATCTTTCCTCTTTTCCATCCTGTCCAAGTATCCTGTTCTTTCC  439

seq1  TTTGTGTGATGTTCCATGGGAAAACATAAACACAAATATCTATGATAATA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTGATGTTCCATGGGAAAACATAAACACAAATATCTATGATAATA  489

seq1  CACAATCAGGCGACCAAATAAGCAATCCTGCCTGAGTTTAGCATGGTTAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATCAGGCGACCAAATAAGCAATCCTGCCTGAGTTTAGCATGGTTAA  539

seq1  CCAATGCATTGGAATTACTTACAGGAGTGTGAGAGCACATGCATCACTGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGCATTGGAATTACTTACAGGAGTGTGAGAGCACATGCATCACTGA  589

seq1  AAATCCTTGCCACTGAGATAGTGACTCAGGAGAGCTGTGTCCTTAAAAAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTTGCCACTGAGATAGTGACTCAGGAGAGCTGTGTCCTTAAAAAT  639

seq1  CTGCACAACTTAAAGGAAGATTCACAGGACACAATTATCCCTTCCCCAGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACAACTTAAAGGAAGATTCACAGGACACAATTATCCCTTCCCCAGC  689

seq1  AATTCTCTATTGATATCCATCTTCATGAATCTTCCACAAGGTGTAATGTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCTATTGATATCCATCTTCATGAATCTTCCACAAGGTGTAATGTT  739

seq1  GAGCCTTGTAAGTCTGAATTGACTCCTGAGTTGTAGGAGAGTCTCTCTGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTGTAAGTCTGAATTGACTCCTGAGTTGTAGGAGAGTCTCTCTGT  789

seq1  CTTCTAGGATGGCATGTTCTCATTTTAAAGAAAAAGAATCTAATAAAATA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGGATGGCATGTTCTCATTTTAAAGAAAAAGAATCTAATAAAATA  839

seq1  AGCAGTACAAAAATAAAGGCAAATGATGCAAAATCTTCTATCACTTCCAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTACAAAAATAAAGGCAAATGATGCAAAATCTTCTATCACTTCCAT  889

seq1  TTTTACAAAGCTGATGTGTATAGTGGCTAATTTCTTGAAATATGAAGATC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAAAGCTGATGTGTATAGTGGCTAATTTCTTGAAATATGAAGATC  939

seq1  ATTATTTTCAGACCATGGCCAAGGAGAGAAACAATATATTCCAACCTGAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTCAGACCATGGCCAAGGAGAGAAACAATATATTCCAACCTGAA  989

seq1  AGACCTCAAGACAGTATTTGTCACAGCAAGAGATAAATTATTCGTCCTGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTCAAGACAGTATTTGTCACAGCAAGAGATAAATTATTCGTCCTGA  1039

seq1  TAGGAATCCCAACTTTCTCCAAGATGAAGAAGCACACATCCTTTTCCACC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATCCCAACTTTCTCCAAGATGAAGAAGCACACATCCTTTTCCACC  1089

seq1  TTTTCAAAGTAATATGCTCTCTCTTTTTTATTCATCTATTAATTCCACAA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAAGTAATATGCTCTCTCTTTTTTATTCATCTATTAATTCCACAA  1139

seq1  AGAATTC  1153
      |||||||
seq2  AGAATTC  1146

seq1: chr5_50004462_50005599
seq2: B6Ng01-138H11.g_66_1176

seq1  GAATTCCAACTCTTGGCCAAATCTATTCTACGAATCAGGTCATGTGTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACTCTTGGCCAAATCTATTCTACGAATCAGGTCATGTGTGCA  50

seq1  GGGAAGGTCCAAATAGTTGGGAGTGATGCTGAGATTCTAGGAGATCTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGTCCAAATAGTTGGGAGTGATGCTGAGATTCTAGGAGATCTGTC  100

seq1  ATTATTTACTTCTATGGATACTGATGATCTACCTATAGCCTGTGCAGACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTACTTCTATGGATACTGATGATCTACCTATAGCCTGTGCAGACG  150

seq1  TTTAACCTGCAGATCAACACGACCACAACACCCTCCTTGTTATGAATAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACCTGCAGATCAACACGACCACAACACCCTCCTTGTTATGAATAGG  200

seq1  AAACAACTACTTCTCAAACAATGCCATGCTTATCTTTGCTATAGAAAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACTACTTCTCAAACAATGCCATGCTTATCTTTGCTATAGAAAGGG  250

seq1  CCCCAAAGCCCTCCCAGAAATTGCATCTATTTCCAGCTGAAGTTCATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAGCCCTCCCAGAAATTGCATCTATTTCCAGCTGAAGTTCATATT  300

seq1  TCTTGCAGCCCAGTTATGTTCCATGTACAGTAACTACCTTTAATATACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCAGCCCAGTTATGTTCCATGTACAGTAACTACCTTTAATATACCA  350

seq1  AGGAATAAAAAAGCAGTTTGCTATGCAATGAAGTAAATGTGTGCAGTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATAAAAAAGCAGTTTGCTATGCAATGAAGTAAATGTGTGCAGTTAC  400

seq1  CTTGTCATTCCATGTTCCCTAGGCTCTAAGCCAAAACTTCAGCTGATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCATTCCATGTTCCCTAGGCTCTAAGCCAAAACTTCAGCTGATAAA  450

seq1  AGCTCTTAATTCAATAGAAGAGCTGAAATCCCCCATCCCTTGAAAGTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTAATTCAATAGAAGAGCTGAAATCCCCCATCCCTTGAAAGTCTA  500

seq1  AAGCAGAAGCAGTTTTGATTTTATTGACTTGTTTTATTCTTCCATCAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAAGCAGTTTTGATTTTATTGACTTGTTTTATTCTTCCATCAGTT  550

seq1  TGTCCTCTAGGCATGGAGGTACTGGACTGTATGCCAACAAAACGTTTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCTAGGCATGGAGGTACTGGACTGTATGCCAACAAAACGTTTGAT  600

seq1  TTTGACTCTCTTCTCCAAACTTTGTCAAAGAGCATCAGCTGTACTTAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTCTCTTCTCCAAACTTTGTCAAAGAGCATCAGCTGTACTTAACC  650

seq1  TTCGTAAACAGGATCTGCTCCACAGGCAATCAAACAGTGCTCTTTCTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTAAACAGGATCTGCTCCACAGGCAATCAAACAGTGCTCTTTCTTAG  700

seq1  ATGAGTTGACACAACTTTTAGTCAATGTATTCTACCTATAAACTGGTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTGACACAACTTTTAGTCAATGTATTCTACCTATAAACTGGTTGG  750

seq1  GCACTCAACTTGGTACACAGTTGGTCCTAGTTGGAGATCAGTATGTGACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCAACTTGGTACACAGTTGGTCCTAGTTGGAGATCAGTATGTGACC  800

seq1  TCTCAGTTGATCCTGCCACCATGCCTTTACTCGATCATAATGGACTCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTTGATCCTGCCACCATGCCTTTACTCGATCATAATGGACTCTCC  850

seq1  ATGTCTAAAATTGTAAACTTCAAATATACTCTTTCTTCTGTATTGCCTTG  900
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATGTCTAAAATTGTAAACTTC-AATATACTCTTTCTTCTGTATTGCCTTG  899

seq1  GTCATAGAGTCTTACCCAAGCAATAGAAAAGTAACCAAGACATACTTACA  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTCATAGAGTCTTACCCAAGCAATAGAAAAGT-ACCAAGACATACTTACA  948

seq1  TTTCATTAAGAATGATGAGTTATC-TTTTTTCTTCTCGGTTCTAGGATCT  999
      ||||| ||||||||||||| |||| |||||||||||||||||||||||||
seq2  TTTCA-TAAGAATGATGAG-TATCTTTTTTTCTTCTCGGTTCTAGGATCT  996

seq1  GTAATTTCGATACATGAGAGAATCATAAACTTGTTCAAGTTCTAAAAATG  1049
      || ||||||||||||||||| ||||||||| || ||||| |||  |||||
seq2  GT-ATTTCGATACATGAGAG-ATCATAAACCTG-TCAAG-TCT--AAATG  1040

seq1  TTTCCCATTAGATAAGTAATTCCAAGTCTGAATGGTGTTTCTTGCCTTTC  1099
      ||  ||| ||||| ||||  | |||||||||  ||   ||| |||  |||
seq2  TT--CCA-TAGAT-AGTA--TTCAAGTCTGATGGG---TTC-TGC--TTC  1078

seq1  CAATCTCAGTTAGGGCTTCTATTGCTGCAGTGAAACACC  1138
        ||||||||   ||||||||||||||||  | ||||||
seq2  --ATCTCAGT--AGGCTTCTATTGCTGCA--GGAACACC  1111