BAC Information

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BAC

Clone NameB6Ng01-138J17
Chromosome5 (Build37)
Map Location 86,479,081 - 86,606,006
singlet/doubletdoublet
Overlap geneCenpc1, LOC100039521, AI586015, Ube1l2
Upstream genenone
Downstream geneGnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138J17.bB6Ng01-138J17.g
ACCDH937818DH937819
length1,1641,072
definitionDH937818|Mus musculus domesticus DNA, BAC clone: B6Ng01-138J17, 5' end.DH937819|Mus musculus domesticus DNA, BAC clone: B6Ng01-138J17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,604,815 - 86,606,006)(86,479,081 - 86,480,166)
sequence
gaattcaataaagaagttcccactaagactcaagagggtcaagctatgaa
gtaaaacaggtttgacagcacaaaatacggtcctgacttttagccccaca
catataaccagggaaccctgttagacatgcagacgcttagcctcacactt
cagaagaagtgctgagtggggtcaaatgtactttaactaggaagtaaaga
ggcttgttaatatttgatgtcctctgagctgaaggatcaggatatcaaac
catgtaggaaagaagctaaagaaagatggcttacatattggttcagtcaa
gaaaacaaaaggcatccaatgagttagtgttgatgaggacaggaagttgg
aactggtcagacagcctaggaacaggaaccttaatccttgttcttggcca
gaaatgtacttgattctcttctggtggagtccgtttttcctaattgtgtt
tcccactggctttctttcccttttacacaagttaagtgagctccactgcc
agggagctaaacggagatgtaaccaaaagaggcacctggaaacaaggtgg
gactgactggactgactgcccctcccccgttgtctctccagagcttcttc
cctatgttctaagaaaacctggagtccagtccttgtcagtgcccattgtt
tgggacccaatcttcctacacagggcctctccttccttctttttcttgag
attccacctataaaaccatcttcccgtctaaactctgtaaaatgcatcct
tccactttgagacaaaggacctaaatggcactgcctagggtagctctggt
ggtccttgagttcatttttccagcaccttagctctgtggactacaaatac
ctgtgcaagaaagcctccattgatccagtgactactgcacttttctgtag
agtttaaactacagttgagtttatgggggaatagtcactgtggctaaatc
tcaatctcttaaataaggactgggtattgtttcagggctgctcaattgcc
ttcctttcccagtcagacagatagatccagatgaacgacagcatatatcc
agaaaaaggaatgaagttggaagcccatttaagatttcagggtttgtcct
tatagtcaaaggtaatgtgacgtaattgttaatttccctgcaactgtcac
gtacaatcaacaat
gaattccaggacagccaggactacacagaaagacactgtctcgaaaaaaa
aaaaaaaaatggaaaagaagacaccattatggatcctgaaatcattagaa
acactttagggagatattaccaactttatgtgaataaatttgaaaatgac
caaaaccctcaactgtccaccataacaacctatgcataaaatcttaacct
ttcatattctgtatcttttcttgatcacgttataacaactcatgaaaatg
tacatttaagtcgggcatggtagggtacaactatactcacaacactcagg
aaatcgagggagaaggatcaggagttcaagatcatccgtggctacacagc
aagttcaaagtcagcctaaactacatgagaccctgtctcagaattctttt
ttaagccaaacataacagtatactgtaatcccagcactcgggagactgag
gcaagaggctcatgagttcaagctcaaggaagacattgtctcaagttaat
taataatgaaatacatacacacatacatgcacacacacatacatgcacac
acacattcatattcatacacacacacacactcatacacacacatactaca
gccagaaaaagaaccttccacgcctgaggagaagcacttctctcagctaa
ctagaagactaatgcccgaatctactagctagagaggaaaagctccctaa
gtcaggaagtatgtacaacactttccccacccctaaggaatgaagagaac
tagctgcagactatctatcattaaacctgtcttcattatcctcaaagctc
taaactagaattcgtttatactaggtttaactaactgtcacagtaggatg
ttgctggactaccacaacatatttcatttctacctagaaaaggaatctca
aaagtagtgaacatgttcagatgcaaacatctgaaaatatgaaagtaaat
ttggaacaagagtcattcatatattacatgtataagatgtcatagtacaa
ctattttttaagaatttagtgacaagcaggttccagaaattaagttggtt
taactttcaaagtcatgtaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_86604815_86606006
seq2: B6Ng01-138J17.b_44_1207 (reverse)

seq1  ATTGTTTGATTGTGTACGTGACAGTGTTGGCAGAGAAAAATGTAACAATT  50
      |||| |||||  ||||||||||||   | |||| ||||    ||||||||
seq2  ATTG-TTGAT--TGTACGTGACAG---TTGCAGGGAAA---TTAACAATT  41

seq1  ATACTGTCACATTTACCTTTTGACTAATAAGGACAAAACCCCTGAAAATC  100
      |    |||||| ||||| ||||||| |||||||||||  ||||||||   
seq2  A---CGTCACA-TTACC-TTTGACT-ATAAGGACAAA--CCCTGAAA--T  81

seq1  CCTAAATGGGCCTTCAAATTTTCATATCTTTTTTCTGGGTAATATGCTGT  150
      | ||||||||| | |||   ||||| || ||||||||| | |||||||||
seq2  CTTAAATGGGCTTCCAA--CTTCAT-TCCTTTTTCTGGAT-ATATGCTGT  127

seq1  CGTTTCATCTGGATCTATCTGTTCTGACTGGGGAAGGGAGGCAATTGAGC  200
      || |||||||||||||||||| |||||||||| |||| ||||||||||||
seq2  CG-TTCATCTGGATCTATCTG-TCTGACTGGGAAAGGAAGGCAATTGAGC  175

seq1  AGCCCCCTGAAACAATACCCAGTCCTTATTTAAGAGATTGAGATTTTAGC  250
      ||  ||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AG--CCCTGAAACAATACCCAGTCCTTATTTAAGAGATTGAGA-TTTAGC  222

seq1  CACAGTGACTATTCCCCCATAAACTCAACTGTAGTTTAAACTCTTACAG-  299
      ||||||||||||||||||||||||||||||||||||||||||| ||||| 
seq2  CACAGTGACTATTCCCCCATAAACTCAACTGTAGTTTAAACTC-TACAGA  271

seq1  AAAGTGCAGTAGTCACTGGATCAATGGAGGCTTTCTTGCACAGGTATTTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGCAGTAGTCACTGGATCAATGGAGGCTTTCTTGCACAGGTATTTG  321

seq1  TAGTCCACAGAGCTAAGGTGCTGGAAAAATGAACTCAAGGACCACCAGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCACAGAGCTAAGGTGCTGGAAAAATGAACTCAAGGACCACCAGAG  371

seq1  CTACCCTAGGCAGTGCCATTTAGGTCCTTTGTCTCAAAGTGGAAGGATGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCTAGGCAGTGCCATTTAGGTCCTTTGTCTCAAAGTGGAAGGATGC  421

seq1  ATTTTACAGAGTTTAGACGGGAAGATGGTTTTATAGGTGGAATCTCAAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACAGAGTTTAGACGGGAAGATGGTTTTATAGGTGGAATCTCAAGA  471

seq1  AAAAGAAGGAAGGAGAGGCCCTGTGTAGGAAGATTGGGTCCCAAACAATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGGAAGGAGAGGCCCTGTGTAGGAAGATTGGGTCCCAAACAATG  521

seq1  GGCACTGACAAGGACTGGACTCCAGGTTTTCTTAGAACATAGGGAAGAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGACAAGGACTGGACTCCAGGTTTTCTTAGAACATAGGGAAGAAG  571

seq1  CTCTGGAGAGACAACGGGGGAGGGGCAGTCAGTCCAGTCAGTCCCACCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAGAGACAACGGGGGAGGGGCAGTCAGTCCAGTCAGTCCCACCTT  621

seq1  GTTTCCAGGTGCCTCTTTTGGTTACATCTCCGTTTAGCTCCCTGGCAGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCAGGTGCCTCTTTTGGTTACATCTCCGTTTAGCTCCCTGGCAGTG  671

seq1  GAGCTCACTTAACTTGTGTAAAAGGGAAAGAAAGCCAGTGGGAAACACAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCACTTAACTTGTGTAAAAGGGAAAGAAAGCCAGTGGGAAACACAA  721

seq1  TTAGGAAAAACGGACTCCACCAGAAGAGAATCAAGTACATTTCTGGCCAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAAAACGGACTCCACCAGAAGAGAATCAAGTACATTTCTGGCCAA  771

seq1  GAACAAGGATTAAGGTTCCTGTTCCTAGGCTGTCTGACCAGTTCCAACTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGGATTAAGGTTCCTGTTCCTAGGCTGTCTGACCAGTTCCAACTT  821

seq1  CCTGTCCTCATCAACACTAACTCATTGGATGCCTTTTGTTTTCTTGACTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCTCATCAACACTAACTCATTGGATGCCTTTTGTTTTCTTGACTG  871

seq1  AACCAATATGTAAGCCATCTTTCTTTAGCTTCTTTCCTACATGGTTTGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATATGTAAGCCATCTTTCTTTAGCTTCTTTCCTACATGGTTTGAT  921

seq1  ATCCTGATCCTTCAGCTCAGAGGACATCAAATATTAACAAGCCTCTTTAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGATCCTTCAGCTCAGAGGACATCAAATATTAACAAGCCTCTTTAC  971

seq1  TTCCTAGTTAAAGTACATTTGACCCCACTCAGCACTTCTTCTGAAGTGTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGTTAAAGTACATTTGACCCCACTCAGCACTTCTTCTGAAGTGTG  1021

seq1  AGGCTAAGCGTCTGCATGTCTAACAGGGTTCCCTGGTTATATGTGTGGGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAAGCGTCTGCATGTCTAACAGGGTTCCCTGGTTATATGTGTGGGG  1071

seq1  CTAAAAGTCAGGACCGTATTTTGTGCTGTCAAACCTGTTTTACTTCATAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGTCAGGACCGTATTTTGTGCTGTCAAACCTGTTTTACTTCATAG  1121

seq1  CTTGACCCTCTTGAGTCTTAGTGGGAACTTCTTTATTGAATTC  1192
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACCCTCTTGAGTCTTAGTGGGAACTTCTTTATTGAATTC  1164

seq1: chr5_86479081_86480166
seq2: B6Ng01-138J17.g_67_1138

seq1  GAATTCCAGGACAGCCAGGACTACACAGAAAGACACTGTCTCGAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGACTACACAGAAAGACACTGTCTCGAAAAAAA  50

seq1  AAAAAAAAATGGAAAAGAAGACACCATTATGGATCCTGAAATCATTAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAATGGAAAAGAAGACACCATTATGGATCCTGAAATCATTAGAA  100

seq1  ACACTTTAGGGAGATATTACCAACTTTATGTGAATAAATTTGAAAATGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTAGGGAGATATTACCAACTTTATGTGAATAAATTTGAAAATGAC  150

seq1  CAAAACCCTCAACTGTCCACCATAACAACCTATGCATAAAATCTTAACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCCTCAACTGTCCACCATAACAACCTATGCATAAAATCTTAACCT  200

seq1  TTCATATTCTGTATCTTTTCTTGATCACGTTATAACAACTCATGAAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATTCTGTATCTTTTCTTGATCACGTTATAACAACTCATGAAAATG  250

seq1  TACATTTAAGTCGGGCATGGTAGGGTACAACTATACTCACAACACTCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTAAGTCGGGCATGGTAGGGTACAACTATACTCACAACACTCAGG  300

seq1  AAATCGAGGGAGAAGGATCAGGAGTTCAAGATCATCCGTGGCTACACAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCGAGGGAGAAGGATCAGGAGTTCAAGATCATCCGTGGCTACACAGC  350

seq1  AAGTTCAAAGTCAGCCTAAACTACATGAGACCCTGTCTCAGAATTCTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCAAAGTCAGCCTAAACTACATGAGACCCTGTCTCAGAATTCTTTT  400

seq1  TTAAGCCAAACATAACAGTATACTGTAATCCCAGCACTCGGGAGACTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCCAAACATAACAGTATACTGTAATCCCAGCACTCGGGAGACTGAG  450

seq1  GCAAGAGGCTCATGAGTTCAAGCTCAAGGAAGACATTGTCTCAAGTTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGGCTCATGAGTTCAAGCTCAAGGAAGACATTGTCTCAAGTTAAT  500

seq1  TAATAATGAAATACATACACACATACATGCACACACACATACATGCACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATGAAATACATACACACATACATGCACACACACATACATGCACAC  550

seq1  ACACATTCATATTCATACACACACACACACTCATACACACACATACTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTCATATTCATACACACACACACACTCATACACACACATACTACA  600

seq1  GCCAGAAAAAGAACCTTCCACGCCTGAGGAGAAGCACTTCTCTCAGCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAAAAAGAACCTTCCACGCCTGAGGAGAAGCACTTCTCTCAGCTAA  650

seq1  CTAGAAGACTAATGCCCGAATCTACTAGCTAGAGAGGAAAAGCTCCCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGACTAATGCCCGAATCTACTAGCTAGAGAGGAAAAGCTCCCTAA  700

seq1  GTCAGGAAGTATGTACAACACTTTCCCCACCCCTAAGGAATGAAGAGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGAAGTATGTACAACACTTTCCCCACCCCTAAGGAATGAAGAGAAC  750

seq1  TAGCTGCAGACTATCTATCATTAAACCTGTCTTCATTATCCTCAAAGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGCAGACTATCTATCATTAAACCTGTCTTCATTATCCTCAAAGCTC  800

seq1  TAAACTAGAATTCGTTTATACTAGGTTTAACTAACTGTCACAGTAGGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTAGAATTCGTTTATACTAGGTTTAACTAACTGTCACAGTAGGATG  850

seq1  TTGCTGGACTACCACAACATATTTCA-TTCTACCTAGAAAAGGAATCTCA  899
      |||||||||||||||||||||||||| |||||||||||||||||||||| 
seq2  TTGCTGGACTACCACAACATATTTCATTTCTACCTAGAAAAGGAATCTC-  899

seq1  AAAAGTAGTGAACATGTTCAGATGCAAACATCTG-AAATATGAAAGTAAA  948
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAAAGTAGTGAACATGTTCAGATGCAAACATCTGAAAATATGAAAGTAAA  949

seq1  TTTGAACAAAGAAGTCAATTCAATATA-TACATGTATAAAGATGTCATAG  997
      |||| |  ||| |||| |||| ||||| ||||||||| ||||||||||||
seq2  TTTGGAACAAG-AGTC-ATTC-ATATATTACATGTAT-AAGATGTCATAG  995

seq1  TACAAACTTATTTTTTTAAGAATTTAGTGAACAAGGCAAGTTCCCAGGAA  1047
      ||| ||||   |||||||||||||||||| |||| ||| |||||   |||
seq2  TAC-AACT--ATTTTTTAAGAATTTAGTG-ACAA-GCAGGTTCC--AGAA  1038

seq1  ATTTAAAGTTGGTTTTAACTTTCAAAGGTCAATGTAATT  1086
      |||  ||||||| ||||||||||||| ||| ||||||||
seq2  ATT--AAGTTGG-TTTAACTTTCAAA-GTC-ATGTAATT  1072