BAC Information

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BAC

Clone NameB6Ng01-139C04
Chromosome5 (Build37)
Map Location 17,956,759 - 17,957,296
singlet/doubletsinglet
Overlap genenone
Upstream geneSpeer4f, EG630927, Sema3c, Cd36, Gnat3, Gnai1, LOC100041818
Downstream geneLOC668167, 4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139C04.bB6Ng01-139C04.g
ACCDH938200DH938201
length1,246898
definitionDH938200|Mus musculus domesticus DNA, BAC clone: B6Ng01-139C04, 5' end.DH938201|Mus musculus domesticus DNA, BAC clone: B6Ng01-139C04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacataataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggttgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattctacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaagttccaccagagaactcctaaacc
tgataaacagctttggtgaagtagctggatataaaattaactcaaacaag
tcaatggcctttctctacacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaataccttgccg
tgactgtaactaaggaagtgaaagatctgtatgataaaaacttcaagtct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaac
ctaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatc
accatgcctgacctaaagctttactacagggcaattgtgataaaaactgc
atggtactggtatagagacagacaagtagaccaatggaatagaattgaag
acccagaaatgaacccacacacctatggtcacttgatcttcgacaaggga
gctaaaccatccagtggaagaagacagcattttcaacaattggtgctggc
acactggttgttatcatgtagaagatgcggatcgatccatacttatctcc
ttgtactaggtcaatctagtggatcaggaacttcacataaccagagaaac
tgaaacttatgaggagaaagtggggaaaaggctttgagattgggtacagg
aaaattctggaacagaacagcatggctgctctgtagatcgatgacaatgg
aactatgacttcaagtctgcaaggcaagacgtcatagacaaagacccacg
atgggagatcttccttctctaatcagaatggggggactaatactga
gaattcaacatcagcaaccatcaggtaaaaggaggcccacagcacaaaga
gatctcacccagtcagtactttgaaattctggggaagaaacccatgccta
tgttaataattctacaaaattgataaactgattagaccttcaaggctatg
aggagtgggaatgctgcaagtccaaaacctatatatcttaagttatctct
gaagaacttcctagtcatacattcttcatttctttgcctaccatagatct
tttttattatcacatgaaagcttttggtgtgtgttatctcagccacccac
tacttttcatcaatctaaaagataagaatgtcattatagagtatctgaac
cctatacaagagatttctctgctttgtcataagccacctatatgattatt
ccaatatggatatgaaaatgcctgatttgtggttttcttttgtgtggtaa
ctataaaactttgtgaaattatttctacattaggatatgtttgggagggc
aacctaagtcagtgttctttgattattgctgctcatatttggctcaagaa
taatctcttattccttttgaagtgagagctctattttccctcaataacag
ctatgcaaaaaaaatgaaatatgtgagttatagtgtggtgaaagaaaact
catctgttattgtagagccttaattatcattaccattttgtaatacagca
aagaggtttctcagaaaatcaaataatcccactaatgggtacttatccaa
aggaaatggcatcagcacatctaaagatgcctgcagttagtgtacaatgc
aacattattcataatgcctgatttacatcatccattgtgcctattgacaa
atgaatggatacacatagaggcaggggttgggggaaggagagagaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_17956759_17957296
seq2: B6Ng01-139C04.g_429_965 (reverse)

seq1  ACCTCTCTCTCCTTCCCCCAACCCCCTGCCTCTATGTGTATCCATTCATT  50
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACCTCTCTCTCCTTCCCCCAA-CCCCTGCCTCTATGTGTATCCATTCATT  49

seq1  TGTCAATAGGCACAATGGATGATGTAAATCAGGCATTATGAATAATGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATAGGCACAATGGATGATGTAAATCAGGCATTATGAATAATGTTG  99

seq1  CATTGTACACTAACTGCAGGCATCTTTAGATGTGCTGATGCCATTTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTACACTAACTGCAGGCATCTTTAGATGTGCTGATGCCATTTCCTT  149

seq1  TGGATAAGTACCCATTAGTGGGATTATTTGATTTTCTGAGAAACCTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAAGTACCCATTAGTGGGATTATTTGATTTTCTGAGAAACCTCTTT  199

seq1  GCTGTATTACAAAATGGTAATGATAATTAAGGCTCTACAATAACAGATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTATTACAAAATGGTAATGATAATTAAGGCTCTACAATAACAGATGA  249

seq1  GTTTTCTTTCACCACACTATAACTCACATATTTCATTTTTTTTGCATAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTTTCACCACACTATAACTCACATATTTCATTTTTTTTGCATAGC  299

seq1  TGTTATTGAGGGAAAATAGAGCTCTCACTTCAAAAGGAATAAGAGATTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTGAGGGAAAATAGAGCTCTCACTTCAAAAGGAATAAGAGATTAT  349

seq1  TCTTGAGCCAAATATGAGCAGCAATAATCAAAGAACACTGACTTAGGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGCCAAATATGAGCAGCAATAATCAAAGAACACTGACTTAGGTTG  399

seq1  CCCTCCCAAACATATCCTAATGTAGAAATAATTTCACAAAGTTTTATAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCAAACATATCCTAATGTAGAAATAATTTCACAAAGTTTTATAGT  449

seq1  TACCACACAAAAGAAAACCACAAATCAGGCATTTTCATATCCATATTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACACAAAAGAAAACCACAAATCAGGCATTTTCATATCCATATTGGA  499

seq1  ATAATCATATAGGTGGCTTATGACAAAGCAGAGAAATC  538
      ||||||||||||||||||||||||||||||||||||||
seq2  ATAATCATATAGGTGGCTTATGACAAAGCAGAGAAATC  537