BAC Information

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BAC

Clone NameB6Ng01-139C14
Chromosome5 (Build37)
Map Location 53,538,228 - 53,681,555
singlet/doubletdoublet
Overlap gene2310045A20Rik, 1810013D10Rik
Upstream geneDhx15, Sod3, Gm447, LOC100041805, Lgi2, LOC545750, D5Ertd135e, Pi4k2b, Zcchc4, Anapc4, Slc34a2
Downstream geneLOC100041198, LOC100041911, Rbpj, Cckar, Tbc1d19, Stim2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139C14.bB6Ng01-139C14.g
ACCDH938218DH938219
length1,2501,027
definitionDH938218|Mus musculus domesticus DNA, BAC clone: B6Ng01-139C14, 5' end.DH938219|Mus musculus domesticus DNA, BAC clone: B6Ng01-139C14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,538,228 - 53,539,473)(53,680,510 - 53,681,555)
sequence
gaattctctgttttgcttgtttcttatttccttcctatcccaagacttgg
aggcagttctccctgagcgcttcgtgctcttggatctctgagactttagc
tggcactaatgacctaccagtgaccctcacgagtagtttgccaggcacta
ccctgctccttaccccagtggacacccacgctgggtaagctgataagacc
atcgtgagcctcgctaacattgtgcacactcgatgaagcccactgaagtt
aactaaattgcccagatcatagctttacgcttaggagtcaaatccaggct
ggctcacacatatgcctggtccttagtctccctcgaaggagcagtggccc
tgaaaagaagtgtatggaggactgtttcaatgttccctgccctcccatgc
acagtggactctctgtgggcacagtcagctaggtcttggctaagtccaca
tctctggagaggaacctgagcagccatgcatagctgtaagaaaagaacaa
atttgcttctggctccgtggcccttacacctctgtatgtgctgcaattga
gcttcgaagcaagagaaaactatcaggaccatgtcctttcttgtttgaca
caggggacttcagttctgactcaccactaactaaattcgagctctgggcc
agttactttatttagatggtactgcttttctgcaaccagaaaaagtggct
tagtatagtacctcccacctccagaacactcaagatgtgacccattattc
tgtgccgtacaaagagaaagatctaggctgaaatcatgtgctgggtggct
gtagctgactagctcctctgagctacctcttcaagaagatggaaataata
tactgaccttacaggtttacagacctataagtaatctacgcatatccata
actatatacagtttatgcgtatctataatcccaccactggtgagattata
gatctaaagttcaaggtcatcctacatagtgagtttcatgctagcctggg
ctacatgaaaagaaaaagaaggataacatttgggagaggatgtataaaga
acagagtttctgaagagctctatctggtgctgagctccggttcagcactt
gctctggactgttctggtgtctataccacttgttgggagaaacagaatgt
aatgtgtgctcacgttagggagaagaggaaatggaaggctagactgtcca
aaggctacacctaactgtggacgacttgggagttgagtcagtcaaatctg

gaattcattaatagactcataacttgatcgcattatcaggcggtggtgga
agctaggaagggaggtacagttgagggaagaagatcaacgggggtgtgtc
ctcaacgatcaggatgtgtctgtccagagtcctgtcctgtctcctttctt
cctagcctctgtgatgtcagctgctgggctttgccctgctcttcccacca
tgacggattgaaatctctgaaaccaggagccaataaatcatttctcctca
agtttgttttgctcagatattttgtcacattggcgcaagtctgactgaca
cgattggattattacacacacacacacacacacacacacacacacacaca
cacacacacacactcaagatccagatttaacctttgatttaagccaatat
tctttccatagcttacagcttacatccctggtttctttccttggagtgtc
tctttccttctccaaagtggggacaaggcaccctgctaaaggtaccgaga
aggtaaaggccagaacattttgaggcagtctctcaccactttaaaaaagg
aagttagaacaaggctttgaaagagcccgtgttccttccccgcccccccc
cccctgcccgcccatacccttccgtaagcttgtcagactgaggcccatct
cttcccttcttccctgctgtgcctcagatgagggcggctgtccagggatc
acctttggctaaaaggaaacagacctcagactgccccgtggtcgccctta
ctcctattgtctatctggcatctctgtgctcatctcccagctgcttgctt
ggagctgggtccgcagagaacaagatgccattaattgtcaccccagggtt
aaggaaaaaaatcattcagaacagtcgattccgacctgggtaaatctggg
attgtgagagtggagagctctgtaggacttctaggcaatacacttggacg
ataactggtcctactgacgtgagacccaaacttgattttccggtaatggt
ataaaggagagaagtggagggtggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_53538228_53539473
seq2: B6Ng01-139C14.b_47_1296

seq1  GAATTCTCTGTTTTGCTTGTTTCTTATTTCCTTCCTATCCCAAGACTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTTTTGCTTGTTTCTTATTTCCTTCCTATCCCAAGACTTGG  50

seq1  AGGCAGTTCTCCCTGAGCGCTTCGTGCTCTTGGATCTCTGAGACTTTAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTTCTCCCTGAGCGCTTCGTGCTCTTGGATCTCTGAGACTTTAGC  100

seq1  TGGCACTAATGACCTACCAGTGACCCTCACGAGTAGTTTGCCAGGCACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTAATGACCTACCAGTGACCCTCACGAGTAGTTTGCCAGGCACTA  150

seq1  CCCTGCTCCTTACCCCAGTGGACACCCACGCTGGGTAAGCTGATAAGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTCCTTACCCCAGTGGACACCCACGCTGGGTAAGCTGATAAGACC  200

seq1  ATCGTGAGCCTCGCTAACATTGTGCACACTCGATGAAGCCCACTGAAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTGAGCCTCGCTAACATTGTGCACACTCGATGAAGCCCACTGAAGTT  250

seq1  AACTAAATTGCCCAGATCATAGCTTTACGCTTAGGAGTCAAATCCAGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAATTGCCCAGATCATAGCTTTACGCTTAGGAGTCAAATCCAGGCT  300

seq1  GGCTCACACATATGCCTGGTCCTTAGTCTCCCTCGAAGGAGCAGTGGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCACACATATGCCTGGTCCTTAGTCTCCCTCGAAGGAGCAGTGGCCC  350

seq1  TGAAAAGAAGTGTATGGAGGACTGTTTCAATGTTCCCTGCCCTCCCATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGAAGTGTATGGAGGACTGTTTCAATGTTCCCTGCCCTCCCATGC  400

seq1  ACAGTGGACTCTCTGTGGGCACAGTCAGCTAGGTCTTGGCTAAGTCCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGACTCTCTGTGGGCACAGTCAGCTAGGTCTTGGCTAAGTCCACA  450

seq1  TCTCTGGAGAGGAACCTGAGCAGCCATGCATAGCTGTAAGAAAAGAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGAGAGGAACCTGAGCAGCCATGCATAGCTGTAAGAAAAGAACAA  500

seq1  ATTTGCTTCTGGCTCCGTGGCCCTTACACCTCTGTATGTGCTGCAATTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTTCTGGCTCCGTGGCCCTTACACCTCTGTATGTGCTGCAATTGA  550

seq1  GCTTCGAAGCAAGAGAAAACTATCAGGACCATGTCCTTTCTTGTTTGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCGAAGCAAGAGAAAACTATCAGGACCATGTCCTTTCTTGTTTGACA  600

seq1  CAGGGGACTTCAGTTCTGACTCACCACTAACTAAATTCGAGCTCTGGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGACTTCAGTTCTGACTCACCACTAACTAAATTCGAGCTCTGGGCC  650

seq1  AGTTACTTTATTTAGATGGTACTGCTTTTCTGCAACCAGAAAAAGTGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTTTATTTAGATGGTACTGCTTTTCTGCAACCAGAAAAAGTGGCT  700

seq1  TAGTATAGTACCTCCCACCTCCAGAACACTCAAGATGTGACCCATTATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATAGTACCTCCCACCTCCAGAACACTCAAGATGTGACCCATTATTC  750

seq1  TGTGCCGTACAAAGAGAAAGATCTAGGCTGAAATCATGTGCTGGGTGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCGTACAAAGAGAAAGATCTAGGCTGAAATCATGTGCTGGGTGGCT  800

seq1  GTAGCTGACTAGCTCCTCTGAGCTACCTCTTCAAGAAGATGGAAATAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTGACTAGCTCCTCTGAGCTACCTCTTCAAGAAGATGGAAATAATA  850

seq1  TACTGACCTTACAGGTTTACAGACCTATAAGTAATCTACGCATATCCATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TACTGACCTTACAGGTTTACAGACCTATAAGTAATCTACGCATATCCAT-  899

seq1  AACTATATACAGTTTATGCGTATCTATAATCCCACCACTGGTGAGATTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATATACAGTTTATGCGTATCTATAATCCCACCACTGGTGAGATTAT  949

seq1  AGATCTAAAGTTCAAGGTCATCCTACATAGTGAGTTTCATGCTAGCCTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTAAAGTTCAAGGTCATCCTACATAGTGAGTTTCATGCTAGCCTGG  999

seq1  GCTACATGAAAAGGAAAAAAGAAGGAATACAATTTGGAGAGGATGTATAA  1050
      |||||||||||||  |||||||||||  ||| || |||||||||||||||
seq2  GCTACATGAAAAG--AAAAAGAAGGATAACATTTGGGAGAGGATGTATAA  1047

seq1  AGACCAGAGTTTTCTG-AGAGCTCATATCCTGTGCTGAGCTCC-GTTCAG  1098
      ||| ||||| |||||| ||||||| ||||  |||||||||||| ||||||
seq2  AGAACAGAG-TTTCTGAAGAGCTC-TATCTGGTGCTGAGCTCCGGTTCAG  1095

seq1  CACATG-GCTGGACTGTTCT-GTG-CTATAACAACTG-TGTGAGAGACAG  1144
      ||| ||  |||||||||||| ||| ||||| ||  || || |||| ||||
seq2  CACTTGCTCTGGACTGTTCTGGTGTCTATACCACTTGTTGGGAGAAACAG  1145

seq1  ACAGTCATG-GTGCCCACGTAGGAGAG-AGA-GAAATGG-AGGCAAGAGC  1190
      |  || ||| |||| |||||  | ||| ||| ||||||| |||| ||| |
seq2  AATGTAATGTGTGCTCACGTTAGGGAGAAGAGGAAATGGAAGGCTAGA-C  1194

seq1  TGCCCAAGGCATCACCCCTAACTGTGGACAGAC-TGGGAG-TGAGCCAGT  1238
      || |||| |  | || ||||||||||||| ||| |||||| |||| ||||
seq2  TGTCCAAAGGCT-ACACCTAACTGTGGAC-GACTTGGGAGTTGAGTCAGT  1242

seq1  CAAATCTG  1246
      ||||||||
seq2  CAAATCTG  1250

seq1: chr5_53680510_53681555
seq2: B6Ng01-139C14.g_67_1093 (reverse)

seq1  CCCCCA-CCTCCACTTCTCCTCCTTCTAAACCATTTACCGGGAAAATCAA  49
      |||||| ||||||||||| |||||| || |||| ||||| ||||||||||
seq2  CCCCCACCCTCCACTTCT-CTCCTT-TATACCA-TTACC-GGAAAATCAA  46

seq1  GGTTTGGGTCTCAACTGTCAGTGGGACTCAGGTTTATCGTTACAAGTTGT  99
       ||||||||||||   |||||| |||| |||  |||||| | |||| |||
seq2  -GTTTGGGTCTCA--CGTCAGTAGGAC-CAG--TTATCG-TCCAAG-TGT  88

seq1  ATTGCCTAGATGTTCCTACAGAGCTCTTCCAACTCTCACAATCCCAGATT  149
      |||||||||| | ||||||||||||||  | ||||||||||||||||| |
seq2  ATTGCCTAGAAG-TCCTACAGAGCTCT--CCACTCTCACAATCCCAGA-T  134

seq1  TTACCCAGGTCGGAATCGACTGTTTCTGGATTGATTCTTTTTCCTTAACC  199
      |||||||||||||||||||||| |||| || ||||| |||||||||||||
seq2  TTACCCAGGTCGGAATCGACTG-TTCT-GAATGATT-TTTTTCCTTAACC  181

seq1  CTGGGGTGACAATTAAATGGCATCTTGTTCTCTGCGGGGCCAGCTCCAAG  249
      |||||||||||||| ||||||||||||||||||||||  |||||||||||
seq2  CTGGGGTGACAATT-AATGGCATCTTGTTCTCTGCGGACCCAGCTCCAAG  230

seq1  CAAGCAGCTGGGAGATGAGCACAGAGATGCCAGATAGACAATAGGAGTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGCTGGGAGATGAGCACAGAGATGCCAGATAGACAATAGGAGTAA  280

seq1  GGGCGACCACGGGGCAGTCTGAGGTCTGTTTCCTTTTAGCCAAAGGTGAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGACCACGGGGCAGTCTGAGGTCTGTTTCCTTTTAGCCAAAGGTGAT  330

seq1  CCCTGGACAGCCGCCCTCATCTGAGGCACAGCAGGGAAGAAGGGAAGAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGACAGCCGCCCTCATCTGAGGCACAGCAGGGAAGAAGGGAAGAGA  380

seq1  TGGGCCTCAGTCTGACAAGCTTACGGAAGGGTATGGGCGGGCAGGGGGGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTCAGTCTGACAAGCTTACGGAAGGGTATGGGCGGGCAGGGGGGG  430

seq1  GGGGGCGGGGAAGGAACACGGGCTCTTTCAAAGCCTTGTTCTAACTTCCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCGGGGAAGGAACACGGGCTCTTTCAAAGCCTTGTTCTAACTTCCT  480

seq1  TTTTTAAAGTGGTGAGAGACTGCCTCAAAATGTTCTGGCCTTTACCTTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAGTGGTGAGAGACTGCCTCAAAATGTTCTGGCCTTTACCTTCT  530

seq1  CGGTACCTTTAGCAGGGTGCCTTGTCCCCACTTTGGAGAAGGAAAGAGAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTACCTTTAGCAGGGTGCCTTGTCCCCACTTTGGAGAAGGAAAGAGAC  580

seq1  ACTCCAAGGAAAGAAACCAGGGATGTAAGCTGTAAGCTATGGAAAGAATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAAGGAAAGAAACCAGGGATGTAAGCTGTAAGCTATGGAAAGAATA  630

seq1  TTGGCTTAAATCAAAGGTTAAATCTGGATCTTGAGTGTGTGTGTGTGTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTAAATCAAAGGTTAAATCTGGATCTTGAGTGTGTGTGTGTGTGT  680

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAATAATCCAATCGTGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAATAATCCAATCGTGT  730

seq1  CAGTCAGACTTGCGCCAATGTGACAAAATATCTGAGCAAAACAAACTTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGACTTGCGCCAATGTGACAAAATATCTGAGCAAAACAAACTTGA  780

seq1  GGAGAAATGATTTATTGGCTCCTGGTTTCAGAGATTTCAATCCGTCATGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAATGATTTATTGGCTCCTGGTTTCAGAGATTTCAATCCGTCATGG  830

seq1  TGGGAAGAGCAGGGCAAAGCCCAGCAGCTGACATCACAGAGGCTAGGAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGAGCAGGGCAAAGCCCAGCAGCTGACATCACAGAGGCTAGGAAG  880

seq1  AAAGGAGACAGGACAGGACTCTGGACAGACACATCCTGATCGTTGAGGAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGACAGGACAGGACTCTGGACAGACACATCCTGATCGTTGAGGAC  930

seq1  ACACCCCCGTTGATCTTCTTCCCTCAACTGTACCTCCCTTCCTAGCTTCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCCCGTTGATCTTCTTCCCTCAACTGTACCTCCCTTCCTAGCTTCC  980

seq1  ACCACCGCCTGATAATGCGATCAAGTTATGAGTCTATTAATGAATTC  1046
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCGCCTGATAATGCGATCAAGTTATGAGTCTATTAATGAATTC  1027