BAC Information

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BAC

Clone NameB6Ng01-139G04
Chromosome5 (Build37)
Map Location 77,716,751 - 77,875,819
singlet/doubletdoublet
Overlap gene2610024G14Rik, Polr2b, Igfbp7
Upstream geneClock, EG665055, Pdcl2, Pafah1b1-ps3, Nmu, LOC665065, EG639545, Exoc1, Cep135, LOC100039117, A730089K16Rik, LOC665107, LOC100039299, C530008M17Rik, A230062G08Rik, Ppat, LOC664998, Paics, Srp72, Arl9, 1700023E05Rik, Hod, Spink2, Rest
Downstream genePea15b, LOC669227, LOC100039398
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139G04.bB6Ng01-139G04.g
ACCDH938384DH938385
length8261,166
definitionDH938384|Mus musculus domesticus DNA, BAC clone: B6Ng01-139G04, 5' end.DH938385|Mus musculus domesticus DNA, BAC clone: B6Ng01-139G04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,716,751 - 77,717,576)(77,874,641 - 77,875,819)
sequence
gaattcatgacctcctgaatgactccttattagcaatgaagtacaacgac
ctcttttttttctcttagttcgagttacaagggacaagaagctgtttaca
tgctatgaaaaggagaaccagtcatttaaacaagccaagtacacagctcc
gtttctgagttccaggagagcaggagatgagtaacagtcacggccttgta
gggcaaggtgatggctgcctgtcttctcagcatccaggacagtgcagcaa
gggttgagctccatgctaactcaatcattttggtggggtggtggtttgga
ttttcgcacctcacatttcctaggtatctaatgtggcctagactgtcagg
agctcagccgccaagttgtgctctgtccgtggtactggcgagctctctga
gaagaagcaccagcaattgaagattctctgcgggggccaggggagtcatg
ctaggacacttgcttaggctttgggctgctctgctcaagaggagtctgca
cagcatacaaagctgggtgtgtccagggtagaattggatgagaaattaag
ctgaagtagcagaatttctaaagacccctgccaccaagcacaatgacctc
attcaacatggtaagaactcattgctgcagtttgtcccctgacgaccaca
ggtttgttgtggcatgtgtatacacacataaaagaatggtgatgtgtgtg
tgtgtttaatccaacagcagtcttttttgcctttgaggtctgtgcatcca
cacgcagctaccgcagacacaccttaggaaggggagtggtgctggagata
tggcaccacagccaagagcacttgct
gaattctcatgcatgtgaacattagtgaaacaagagctgggtacagctca
gtaccaagagaactagtctcatatatgcaaggcccaaggtttgagcccca
gcacccccgagaaaaagaagaataaaagtgtgtgttgctttccttactta
tgaagatacctgttaccagtttaatttgcagtcccccaggtacaaaatct
aagtcgaggaaaagattttgcactttaacaccaactgcagacatcccatg
aggcttaggaattgctttacctaacagtgcaggacctccttgctttgtgc
ttcagagaatacttggttgctgtcaggccatgccctgtcctaagttactc
tatattatataatatggtgatttttcagatcgtcccttgcctgagagatt
gtgttttaaaaggagattttggccccacttcaaggacagagaacaactgt
gcacctgggtagatatatatgaatagtatgatctttccagccctgcccac
atccccaggctggtactcacaggaataggaaaattgacaaatataaattt
attagggtaaattaagacagttggagcacatgtgcatactaaaaccatag
tagaaaaactaagcccaagaacttattaaacaatggtagcagaggcagat
agatctctgagttcaagacaatcctggtctatatggtgagttccaggaca
gacagggctacacagagaaaccacacacacacacacacacacacacacac
acacacatacacacaaaaggacttattaaacataccaacagaccaaggaa
atgatgtaactccttcacctagaccccataaaaaggtgaacccccacctt
taaaaagccaccactcccataaaaaggtgatggctcccaccacctgtgtc
tgactgatcacttgtgtggtcaaaactgacacacgaagggctctccgatg
ttctaggagcatcagctcagctcagaccctaacaatgcatcctacctaaa
acaatcttctcgcgcctctgatcacccatctcacctgcagtcctctgtcc
cctgtccttcactgaaaacgggcctttcacggggcttcagctcaatgctt
gtgtctcaacccggggacctgccgaccagatgtaggcagcgatcttcggg
catcactggaggagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_77716751_77717576
seq2: B6Ng01-139G04.b_48_873

seq1  GAATTCATGACCTCCTGAATGACTCCTTATTAGCAATGAAGTACAACGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGACCTCCTGAATGACTCCTTATTAGCAATGAAGTACAACGAC  50

seq1  CTCTTTTTTTTCTCTTAGTTCGAGTTACAAGGGACAAGAAGCTGTTTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTTTTCTCTTAGTTCGAGTTACAAGGGACAAGAAGCTGTTTACA  100

seq1  TGCTATGAAAAGGAGAACCAGTCATTTAAACAAGCCAAGTACACAGCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGAAAAGGAGAACCAGTCATTTAAACAAGCCAAGTACACAGCTCC  150

seq1  GTTTCTGAGTTCCAGGAGAGCAGGAGATGAGTAACAGTCACGGCCTTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGAGTTCCAGGAGAGCAGGAGATGAGTAACAGTCACGGCCTTGTA  200

seq1  GGGCAAGGTGATGGCTGCCTGTCTTCTCAGCATCCAGGACAGTGCAGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAGGTGATGGCTGCCTGTCTTCTCAGCATCCAGGACAGTGCAGCAA  250

seq1  GGGTTGAGCTCCATGCTAACTCAATCATTTTGGTGGGGTGGTGGTTTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGAGCTCCATGCTAACTCAATCATTTTGGTGGGGTGGTGGTTTGGA  300

seq1  TTTTCGCACCTCACATTTCCTAGGTATCTAATGTGGCCTAGACTGTCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCGCACCTCACATTTCCTAGGTATCTAATGTGGCCTAGACTGTCAGG  350

seq1  AGCTCAGCCGCCAAGTTGTGCTCTGTCCGTGGTACTGGCGAGCTCTCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGCCGCCAAGTTGTGCTCTGTCCGTGGTACTGGCGAGCTCTCTGA  400

seq1  GAAGAAGCACCAGCAATTGAAGATTCTCTGCGGGGGCCAGGGGAGTCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGCACCAGCAATTGAAGATTCTCTGCGGGGGCCAGGGGAGTCATG  450

seq1  CTAGGACACTTGCTTAGGCTTTGGGCTGCTCTGCTCAAGAGGAGTCTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGACACTTGCTTAGGCTTTGGGCTGCTCTGCTCAAGAGGAGTCTGCA  500

seq1  CAGCATACAAAGCTGGGTGTGTCCAGGGTAGAATTGGATGAGAAATTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATACAAAGCTGGGTGTGTCCAGGGTAGAATTGGATGAGAAATTAAG  550

seq1  CTGAAGTAGCAGAATTTCTAAAGACCCCTGCCACCAAGCACAATGACCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTAGCAGAATTTCTAAAGACCCCTGCCACCAAGCACAATGACCTC  600

seq1  ATTCAACATGGTAAGAACTCATTGCTGCAGTTTGTCCCCTGACGACCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAACATGGTAAGAACTCATTGCTGCAGTTTGTCCCCTGACGACCACA  650

seq1  GGTTTGTTGTGGCATGTGTATACACACATAAAAGAATGGTGATGTGTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTTGTGGCATGTGTATACACACATAAAAGAATGGTGATGTGTGTG  700

seq1  TGTGTTTAATCCAACAGCAGTCTTTTTTGCCTTTGAGGTCTGTGCATCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTAATCCAACAGCAGTCTTTTTTGCCTTTGAGGTCTGTGCATCCA  750

seq1  CACGCAGCTACCGCAGACACACCTTAGGAAGGGGAGTGGTGCTGGAGAGA  800
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CACGCAGCTACCGCAGACACACCTTAGGAAGGGGAGTGGTGCTGGAGATA  800

seq1  TGGCACCACAGCTAAGAGCACTTGCT  826
      |||||||||||| |||||||||||||
seq2  TGGCACCACAGCCAAGAGCACTTGCT  826

seq1: chr5_77874641_77875819
seq2: B6Ng01-139G04.g_69_1234 (reverse)

seq1  GACTCCTCCAGTGTGAGCCGGAGGAGCTGCTGCCATCAGTCTGG-CTGCT  49
      |||||||||||||   ||| || || | ||||||  || ||||| | || 
seq2  GACTCCTCCAGTG-ATGCCCGAAGATC-GCTGCCTACA-TCTGGTCGGC-  46

seq1  GAGGTCACAGGTCTGAGACACAAGCTATAGAGCTGAAGGCACAGGTGAAA  99
       ||||| | ||  |||||||||||| || ||||||||| | |  ||||||
seq2  -AGGTCCCCGGGTTGAGACACAAGC-ATTGAGCTGAAGCCCC--GTGAAA  92

seq1  GGGCAGGTATCAGATGAAGGAACAAGGGGACAGAGGGACTGCAGGTTGAG  149
      || | | | |||| |||||||   |||||||||| |||||||||| ||||
seq2  GGCCCGTTTTCAG-TGAAGGA--CAGGGGACAGA-GGACTGCAGG-TGAG  137

seq1  ATGGGTGATCAGGAGCGCGAGAAGATAGTTTTTAGGTAGGATGCATTGTT  199
      ||||||||||||  |||||||||||| | |||||||||||||||||||||
seq2  ATGGGTGATCAGAGGCGCGAGAAGATTG-TTTTAGGTAGGATGCATTGTT  186

seq1  AGGGTCTGAGCTGAGCTGATGCTCCTAGAACATCGGAGAGTCCTTCGTGT  249
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGGGTCTGAGCTGAGCTGATGCTCCTAGAACATCGGAGAGCCCTTCGTGT  236

seq1  GTCAGTTCTGA-CACACAAGTGATCAGTCAGACACAGGTTGGTGGGAGCC  298
      ||||||| ||| |||||||||||||||||||||||||| |||||||||||
seq2  GTCAGTTTTGACCACACAAGTGATCAGTCAGACACAGG-TGGTGGGAGCC  285

seq1  ATCACCTTTTTATGGGGAGTGGTGGCTTTTTAAAGGTGGGGGTTCACCTT  348
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATCACCTTTTTAT-GGGAGTGGTGGCTTTTTAAAGGTGGGGGTTCACCTT  334

seq1  TTTATGGGGTCTAGGTGAAGGAGTTACATCATTTCCTTGGTCTGTTGGTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGGGTCTAGGTGAAGGAGTTACATCATTTCCTTGGTCTGTTGGTA  384

seq1  TGTTTAATAAGTCC-TTTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGT  447
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGTTTAATAAGTCCTTTTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGT  434

seq1  GTGTGTGTGTGGTTTCTCTGTGTAGCCCTGTCTGTCCTGGAACTCACCAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGGTTTCTCTGTGTAGCCCTGTCTGTCCTGGAACTCACCAT  484

seq1  ATAGACCAGGATTGTCTTGAACTCAGAGATCTATCTGCCTCTGCTACCAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACCAGGATTGTCTTGAACTCAGAGATCTATCTGCCTCTGCTACCAT  534

seq1  TGTTTAATAAGTTCTTGGGCTTAGTTTTTCTACTATGGTTTTAGTATGCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAATAAGTTCTTGGGCTTAGTTTTTCTACTATGGTTTTAGTATGCA  584

seq1  CATGTGCTCCAACTGTCTTAATTTACCCTAATAAATTTATATTTGTCAAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCTCCAACTGTCTTAATTTACCCTAATAAATTTATATTTGTCAAT  634

seq1  TTTCCTATTCCTGTGAGTACCAGCCTGGGGATGTGGGCAGGGCTGGAAAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTATTCCTGTGAGTACCAGCCTGGGGATGTGGGCAGGGCTGGAAAG  684

seq1  ATCATACTATTCATATATATCTACCCAGGTGCACAGTTGTTCTCTGTCCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATACTATTCATATATATCTACCCAGGTGCACAGTTGTTCTCTGTCCT  734

seq1  TGAAGTGGGGCCAAAATCTCCTTTTAAAACACAATCTCTCAGGCAAGGGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGGGGCCAAAATCTCCTTTTAAAACACAATCTCTCAGGCAAGGGA  784

seq1  CGATCTGAAAAATCACCATATTATATAATATAGAGTAACTTAGGACAGGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCTGAAAAATCACCATATTATATAATATAGAGTAACTTAGGACAGGG  834

seq1  CATGGCCTGACAGCAACCAAGTATTCTCTGAAGCACAAAGCAAGGAGGTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCCTGACAGCAACCAAGTATTCTCTGAAGCACAAAGCAAGGAGGTC  884

seq1  CTGCACTGTTAGGTAAAGCAATTCCTAAGCCTCATGGGATGTCTGCAGTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTGTTAGGTAAAGCAATTCCTAAGCCTCATGGGATGTCTGCAGTT  934

seq1  GGTGTTAAAGTGCAAAATCTTTTCCTCGACTTAGATTTTGTACCTGGGGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTAAAGTGCAAAATCTTTTCCTCGACTTAGATTTTGTACCTGGGGG  984

seq1  ACTGCAAATTAAACTGGTAACAGGTATCTTCATAAGTAAGGAAAGCAACA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAAATTAAACTGGTAACAGGTATCTTCATAAGTAAGGAAAGCAACA  1034

seq1  CACACTTTTATTCTTCTTTTTCTCGGGGGTGCTGGGGCTCAAACCTTGGG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTTTATTCTTCTTTTTCTCGGGGGTGCTGGGGCTCAAACCTTGGG  1084

seq1  CCTTGCATATATGAGACTAGTTCTCTTGGTACTGAGCTGTACCCAGCTCT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCATATATGAGACTAGTTCTCTTGGTACTGAGCTGTACCCAGCTCT  1134

seq1  TGTTTCACTAATGTTCACATGCATGAGAATTC  1179
      ||||||||||||||||||||||||||||||||
seq2  TGTTTCACTAATGTTCACATGCATGAGAATTC  1166