BAC Information

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BAC

Clone NameB6Ng01-139H04
Chromosome5 (Build37)
Map Location 134,107,018 - 134,271,674
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039731
Downstream geneLOC666038, LOC100039750, Gats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139H04.bB6Ng01-139H04.g
ACCDH938426DH938427
length1,0041,042
definitionDH938426|Mus musculus domesticus DNA, BAC clone: B6Ng01-139H04, 5' end.DH938427|Mus musculus domesticus DNA, BAC clone: B6Ng01-139H04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,107,018 - 134,108,019)(134,270,629 - 134,271,674)
sequence
gaattcatggctctgagaattatatgggagaggtcatatacctcaagttt
gcttctaataactcatgaattcctggtagagattatccatgttttcaatt
ccccagaaaaactgtttgcaactcaagagtctctctagtcatgtcatcct
ggcctctctcgccacatggcccaatacccaccatctatttgatgaatgct
attgaccacaatgatagtcaatgcagttacccaaatgtagaatagtggat
ttttatctattgaaatattttatatacttgaatgcaaaacaaaaatatat
ctaccatttggctgtaatgcagaccaacctcacaatcagagtttttcctg
cacacctgtggccaaagaacaacctgtatgtaggtcagtcttcatagtat
acccacaccccagcccacacacactcctctcctagtatatgttgttgtaa
actaaggaatctgctaaaggtgtattgttttattaggctgagtgcaaatg
atcaaaaaactaatctcattttgaagctggcatttttttttaagggtaaa
tgtcagcctatcaagtatgttagtagaatgcaagcataaaacatttaaag
agaatcccaacatgatgaaaagatggataagaaccaaccttgtagagagc
tggggtatagctcagtggtgacatgcttgaccaatgtgtgaagccccagg
ttctatggaaaaatgtgagggaggatggaaggataggaaggagaaaggaa
gattaaatgttctctaagtttctctcccactctgtgctcatttgaatgag
aatggcccccagaggctcatacattttgaatgcttagttcccattggtgg
actgtttaaaaaaggataagggggatagctttgttgaaagaatgtgtcca
gaggggtggtctcctgacattccccccccctcagcccacctcttctctcc
tctgcagaatcaagatgaagctttcgctactttctcagcacaatgctgcc
tatc
gaattctaactctagatgttttttttcccccttccatttcatatatactg
gtgaaaagtatcacttaagacaaagttgggaataaattaagcagggaacc
acgtaaagaggtttatatttgctttttcattcttgccatagtctgtgaat
ttttataccttgactatttccaactggctcacaaacccccaatttaaatt
tgatggtgccatcgggtagttaccataaacttgagggtgttcctgggaat
tctgggtcaagatagaaagtctctacatgtgtcagttgatggttttgagt
gcctggcatgttaccagtcacttctatcactcagtttacaattgcaatca
gccagaactttgtagacctgtcagtccagttacttgggaggctaaagcag
gaggaccatgggttcaaggccaacctaggcaacagggtgagttcaaggcc
agcctgggcatctatgtaagactatcccagaataaaaaattggaaaagag
ttgaagttgtagcttaactaatagagtattttcctagtatgggccaaatc
ctggttttaatttctaatatttcccctctctttaaattccagaaagctca
tagtattattcggataaatggaccagaagagaaatcaggcttgagggatc
tagcaaactgctcagattgagcaactcaaggacacaaactttttattttt
tatttatttttattttttatttttttggtttttcgagacagggtttctct
gtatagccctggctgtcctggagctcactttgtagaccaggctggctttg
aactcagaaatccgcctgcctctgccttctgagtgctgggattaaaggtg
tgcgccaccacgcccggctaggacacaaacttttgatctcattctgggaa
tgcagcagaatgatgcttatcttgttcactcattataacattttagcaga
cagaagcaggactgaactgcacgaccgataataaatacttgctgagtggg
taaatagccaagtgtggtctgattccaaggtatcttcgtata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_134107018_134108019
seq2: B6Ng01-139H04.b_46_1049

seq1  GAATTCATGGCTCTGAGAATTATATGGGAGAGGTCATATACCTCAAGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGCTCTGAGAATTATATGGGAGAGGTCATATACCTCAAGTTT  50

seq1  GCTTCTAATAACTCATGAATTCCTGGTAGAGATTATCCATGTTTTCAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTAATAACTCATGAATTCCTGGTAGAGATTATCCATGTTTTCAATT  100

seq1  CCCCAGAAAAACTGTTTGCAACTCAAGAGTCTCTCTAGTCATGTCATCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGAAAAACTGTTTGCAACTCAAGAGTCTCTCTAGTCATGTCATCCT  150

seq1  GGCCTCTCTCGCCACATGGCCCAATACCCACCATCTATTTGATGAATGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTCTCGCCACATGGCCCAATACCCACCATCTATTTGATGAATGCT  200

seq1  ATTGACCACAATGATAGTCAATGCAGTTACCCAAATGTAGAATAGTGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACCACAATGATAGTCAATGCAGTTACCCAAATGTAGAATAGTGGAT  250

seq1  TTTTATCTATTGAAATATTTTATATACTTGAATGCAAAACAAAAATATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCTATTGAAATATTTTATATACTTGAATGCAAAACAAAAATATAT  300

seq1  CTACCATTTGGCTGTAATGCAGACCAACCTCACAATCAGAGTTTTTCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCATTTGGCTGTAATGCAGACCAACCTCACAATCAGAGTTTTTCCTG  350

seq1  CACACCTGTGGCCAAAGAACAACCTGTATGTAGGTCAGTCTTCATAGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTGTGGCCAAAGAACAACCTGTATGTAGGTCAGTCTTCATAGTAT  400

seq1  ACCCACACCCCAGCCCACACACACTCCTCTCCTAGTATATGTTGTTGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACACCCCAGCCCACACACACTCCTCTCCTAGTATATGTTGTTGTAA  450

seq1  ACTAAGGAATCTGCTAAAGGTGTATTGTTTTATTAGGCTGAGTGCAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGGAATCTGCTAAAGGTGTATTGTTTTATTAGGCTGAGTGCAAATG  500

seq1  ATCAAAAAACTAATCTCATTTTGAAGCTGGCATTTTTTTTTAAGGGTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAAACTAATCTCATTTTGAAGCTGGCATTTTTTTTTAAGGGTAAA  550

seq1  TGTCAGCCTATCAAGTATGTTAGTAGAATGCAAGCATAAAACATTTAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCCTATCAAGTATGTTAGTAGAATGCAAGCATAAAACATTTAAAG  600

seq1  AGAATCCCAACATGATGAAAAGATGGATAAGAACCAACCTTGTAGAGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCCCAACATGATGAAAAGATGGATAAGAACCAACCTTGTAGAGAGC  650

seq1  TGGGGTATAGCTCAGTGGTGACATGCTTGACCAATGTGTGAAGCCCCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTATAGCTCAGTGGTGACATGCTTGACCAATGTGTGAAGCCCCAGG  700

seq1  TTCTATGGAAAAATGTGAGGGAGGATGGAAGGATAGGAAGGAGAAAGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGGAAAAATGTGAGGGAGGATGGAAGGATAGGAAGGAGAAAGGAA  750

seq1  GATTAAATGTTCTCTAGGTTTCTCTCCCACTCTGTGCTCATTTGAATGAG  800
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GATTAAATGTTCTCTAAGTTTCTCTCCCACTCTGTGCTCATTTGAATGAG  800

seq1  AATGGCCCCCAGAGGCTCATACA-TTTGAATGCTTAGTTCCCAATTGGTG  849
      ||||||||||||||||||||||| |||||||||||||||||| |||||||
seq2  AATGGCCCCCAGAGGCTCATACATTTTGAATGCTTAGTTCCC-ATTGGTG  849

seq1  GACTGTTTAAGAAGGATTAAGGGGGATAGCTTTGTTGAAAGAAGTGTGT-  898
      |||||||||| || |  |||||||||||||||||||||||||| ||||| 
seq2  GACTGTTTAAAAAAGGATAAGGGGGATAGCTTTGTTGAAAGAA-TGTGTC  898

seq1  CAGA-GGGTGGTCT-CTGACATTCCCCCCCCC-CAGCCCCACCTCTCCTC  945
      |||| ||||||||| ||||||||||||||||| ||| ||||||||| |||
seq2  CAGAGGGGTGGTCTCCTGACATTCCCCCCCCCTCAG-CCCACCTCTTCTC  947

seq1  TCCTCTGCAG-ATCAAGATGTAGCTCTCAGCTACTTCTCCAGCACCATGC  994
      |||||||||| ||||||||| |||| || |||||||   |||||| ||||
seq2  TCCTCTGCAGAATCAAGATGAAGCTTTC-GCTACTTTCTCAGCACAATGC  996

seq1  TGCCTATC  1002
      ||||||||
seq2  TGCCTATC  1004

seq1: chr5_134270629_134271674
seq2: B6Ng01-139H04.g_66_1107 (reverse)

seq1  TATACGAAGAATATACTTGGAATCAGACAACACTTGGCTATTTACCCACT  50
      ||||||||| |||  ||||||||||||| |||||||||||||||||||||
seq2  TATACGAAG-ATA-CCTTGGAATCAGACCACACTTGGCTATTTACCCACT  48

seq1  CAGCAAGTATTTATTATCGGTCGTGCAGTTCAGTCCTGCTTCTGTCTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGTATTTATTATCGGTCGTGCAGTTCAGTCCTGCTTCTGTCTGCT  98

seq1  AAAATTGTATTAATGAGTGAACAAGATAAGCATCATTCTTGCTGCATTCC  150
      |||| |||  |||||||||||||||||||||||||||| |||||||||||
seq2  AAAA-TGTTATAATGAGTGAACAAGATAAGCATCATTC-TGCTGCATTCC  146

seq1  CAGAATGAGATCAAAAGTTTGTGTCCTAGCCGGGCGTGGTGGCGCACACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGAGATCAAAAGTTTGTGTCCTAGCCGGGCGTGGTGGCGCACACC  196

seq1  TTTAATCCCAGCACTCAGGAGGCAGAGGCAGGCGGATTTCTGAGTTCAAA  250
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTTAATCCCAGCACTCAGAAGGCAGAGGCAGGCGGATTTCTGAGTTCAAA  246

seq1  GCCAGCCTGGTCTACAAAGTGAGCTCCAGGACAGCCAGGGCTATACAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTGGTCTACAAAGTGAGCTCCAGGACAGCCAGGGCTATACAGAG  296

seq1  AAACCCTGTCTCGAAAAACCAAAAAAATAAAAAATAAAAATAAATAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTGTCTCGAAAAACCAAAAAAATAAAAAATAAAAATAAATAAAAA  346

seq1  ATAAAAAGTTTGTGTCCTTGAGTTGCTCAATCTGAGCAGTTTGCTAGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAGTTTGTGTCCTTGAGTTGCTCAATCTGAGCAGTTTGCTAGATC  396

seq1  CCTCAAGCCTGATTTCTCTTCTGGTCCATTTATCCGAATAATACTATGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGCCTGATTTCTCTTCTGGTCCATTTATCCGAATAATACTATGAG  446

seq1  CTTTCTGGAATTTAAAGAGAGGGGAAATATTAGAAATTAAAACCAGGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGGAATTTAAAGAGAGGGGAAATATTAGAAATTAAAACCAGGATT  496

seq1  TGGCCCATACTAGGAAAATACTCTATTAGTTAAGCTACAACTTCAACTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCATACTAGGAAAATACTCTATTAGTTAAGCTACAACTTCAACTCT  546

seq1  TTTCCAATTTTTTATTCTGGGATAGTCTTACATAGATGCCCAGGCTGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAATTTTTTATTCTGGGATAGTCTTACATAGATGCCCAGGCTGGCC  596

seq1  TTGAACTCACCCTGTTGCCTAGGTTGGCCTTGAACCCATGGTCCTCCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTCACCCTGTTGCCTAGGTTGGCCTTGAACCCATGGTCCTCCTGC  646

seq1  TTTAGCCTCCCAAGTAACTGGACTGACAGGTCTACAAAGTTCTGGCTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCCTCCCAAGTAACTGGACTGACAGGTCTACAAAGTTCTGGCTGAT  696

seq1  TGCAATTGTAAACTGAGTGATAGAAGTGACTGGTAACATGCCAGGCACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTGTAAACTGAGTGATAGAAGTGACTGGTAACATGCCAGGCACTC  746

seq1  AAAACCATCAACTGACACATGTAGAGACTTTCTATCTTGACCCAGAATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCATCAACTGACACATGTAGAGACTTTCTATCTTGACCCAGAATTC  796

seq1  CCAGGAACACCCTCAAGTTTATGGTAACTACCCGATGGCACCATCAAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAACACCCTCAAGTTTATGGTAACTACCCGATGGCACCATCAAATT  846

seq1  TAAATTGGGGGTTTGTGAGCCAGTTGGAAATAGTCAAGGTATAAAAATTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGGGGGTTTGTGAGCCAGTTGGAAATAGTCAAGGTATAAAAATTC  896

seq1  ACAGACTATGGCAAGAATGAAAAAGCAAATATAAACCTCTTTACGTGGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTATGGCAAGAATGAAAAAGCAAATATAAACCTCTTTACGTGGTT  946

seq1  CCCTGCTTAATTTATTCCCAACTTTGTCTTAAGTGATACTTTTCACCAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTTAATTTATTCCCAACTTTGTCTTAAGTGATACTTTTCACCAGT  996

seq1  ATATATGAAATGGAAGGGGGAAAAAAAACATCTAGAGTTAGAATTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGAAATGGAAGGGGGAAAAAAAACATCTAGAGTTAGAATTC  1042