BAC Information

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BAC

Clone NameB6Ng01-139K03
Chromosome5 (Build37)
Map Location 59,059,115 - 59,223,280
singlet/doubletdoublet
Overlap genenone
Upstream genePcdh7, LOC100041385
Downstream geneLOC100041396, LOC666499, EG625870, LOC100041425
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139K03.bB6Ng01-139K03.g
ACCDH938568DH938569
length309546
definitionDH938568|Mus musculus domesticus DNA, BAC clone: B6Ng01-139K03, 5' end.DH938569|Mus musculus domesticus DNA, BAC clone: B6Ng01-139K03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,222,972 - 59,223,280)(59,059,115 - 59,059,656)
sequence
tggtttgttttctgtttgttttttgccttttactttgtcattagtctttt
acttagttcatctaagtatgtatttccagtttatctgaaaaaataattta
gggtactgtgggataattaggggacaaactatgaaagctggacaacataa
aaatgatagtccttacatgttatgtgtgacaccttgagatcatagctggg
aaagtgtaggagtgaaagacagaaaaaaggagagagagaggagagagaga
gagagagagagagagagagagagagagagagagagagagagagagagaga
gagagagag
gaattccttgctattcccaaggatatggtaagtgaactttatagcacaag
cttttattattttattttattttattttattttattttattttattttat
tttatttttttacaagaaatctcaggctcattaatttaccaaagaaggat
aagcattttaagcagaagttttcctctgttacgatgattatttaactata
atgtcaaagattccagattttacaaacagataattaaagtaggtgctgct
gactcattagtcatagctctttggtgattagattttaaaagcattcctag
agactcttgttctaataaatgaagaacatgaaactgtgaattacacaaag
ttttattccacaagtttacatgtgattaacctttaaaggagatgacctga
atttcatttaaatggccaggcattcaagctttagtcaaaggcaattattg
gctaccaatcagaatatatatatgtgtgtgtgtatatatatatatatata
tatatgtatacatatatatatatatatatacacacatatatatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_59222972_59223280
seq2: B6Ng01-139K03.b_49_357 (reverse)

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  50

seq1  CTCTCTCTCTCTCTCTCTCCTCTCTCTCTCCTTTTTTCTGTCTTTCACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCCTCTCTCTCTCCTTTTTTCTGTCTTTCACTC  100

seq1  CTACACTTTCCCAGCTATGATCTCAAGGTGTCACACATAACATGTAAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACTTTCCCAGCTATGATCTCAAGGTGTCACACATAACATGTAAGGA  150

seq1  CTATCATTTTTATGTTGTCCAGCTTTCATAGTTTGTCCCCTAATTATCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCATTTTTATGTTGTCCAGCTTTCATAGTTTGTCCCCTAATTATCCC  200

seq1  ACAGTACCCTAAATTATTTTTTCAGATAAACTGGAAATACATACTTAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTACCCTAAATTATTTTTTCAGATAAACTGGAAATACATACTTAGAT  250

seq1  GAACTAAGTAAAAGACTAATGACAAAGTAAAAGGCAAAAAACAAACAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAAGTAAAAGACTAATGACAAAGTAAAAGGCAAAAAACAAACAGAA  300

seq1  AACAAACCA  309
      |||||||||
seq2  AACAAACCA  309

seq1: chr5_59059115_59059656
seq2: B6Ng01-139K03.g_68_613

seq1  GAATTCCTTGCTATTCCCAAGGATATGGTAAGTGAACTTTATAGCACAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGCTATTCCCAAGGATATGGTAAGTGAACTTTATAGCACAAG  50

seq1  CTTTTATTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTAT  100

seq1  TTTATTTTTTTACAAGAAATCTCAGGCTCATTAATTTACCAAAGAAGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTTTACAAGAAATCTCAGGCTCATTAATTTACCAAAGAAGGAT  150

seq1  AAGCATTTTAAGCAGAAGTTTTCCTCTGTTACGATGATTATTTAACTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTTTAAGCAGAAGTTTTCCTCTGTTACGATGATTATTTAACTATA  200

seq1  ATGTCAAAGATTCCAGATTTTACAAACAGATAATTAAAGTAGGTGCTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAAAGATTCCAGATTTTACAAACAGATAATTAAAGTAGGTGCTGCT  250

seq1  GACTCATTAGTCATAGCTCTTTGGTGATTAGATTTTAAAAGCATTCCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCATTAGTCATAGCTCTTTGGTGATTAGATTTTAAAAGCATTCCTAG  300

seq1  AGACTCTTGTTCTAATAAATGAAGAACATGAAACTGTGAATTACACAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTTGTTCTAATAAATGAAGAACATGAAACTGTGAATTACACAAAG  350

seq1  TTTTATTCCACAAGTTTACATGTGATTAACCTTTAAAGGAGATGACCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTCCACAAGTTTACATGTGATTAACCTTTAAAGGAGATGACCTGA  400

seq1  ATTTCATTTAAATGGCCAGGCATTCAAGCTTTAGTCAAAGGCAATTATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTTAAATGGCCAGGCATTCAAGCTTTAGTCAAAGGCAATTATTG  450

seq1  GCTACCAATCAGAATATATATATGTGTGTGTGTATATATATATATATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCAATCAGAATATATATATGTGTGTGTGTATATATATATATATATA  500

seq1  TATATGTATATATATATATATATATATAT----ATATATATATATA  542
      |||||||||| ||||||||||||||||||    | |||||||||||
seq2  TATATGTATACATATATATATATATATATACACACATATATATATA  546