BAC Information

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BAC

Clone NameB6Ng01-140B03
Chromosome5 (Build37)
Map Location 17,025,231 - 17,166,240
singlet/doubletdoublet
Overlap geneSema3c
Upstream geneHgf, EG668131, LOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927
Downstream geneCd36, Gnat3, Gnai1, LOC100041818, LOC668167
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140B03.bB6Ng01-140B03.g
ACCDH938895DH938896
length1,0961,140
definitionDH938895|Mus musculus domesticus DNA, BAC clone: B6Ng01-140B03, 5' end.DH938896|Mus musculus domesticus DNA, BAC clone: B6Ng01-140B03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,165,126 - 17,166,240)(17,025,231 - 17,026,406)
sequence
gaattctctatacattaacttccaacaagacatacttcagtgaaaactta
gaaaggggagtttctggctggtttgccttgagctctgtagacaactgact
tggataaatcgttgctatagtaaaaggaaaaaggtcaacaatatatttta
tattttcattcatagaactatacttatttcgtcctacgtatatgtctatt
tattatcgataatactttctttcttttgtgatagaaggcatgggagtaat
tatttcctctattttactattatgatttcccagaacactcaacgtttcac
cttataacagacatgtattgagcatttcatatagttttcttaaggagttt
tcatgattctttattttttttctctttgcatctcagtttccttagaaaaa
taaaccaaagatactttgattgcctttattcatatagatagctacagtaa
gaaaggtttcaaacacatgtataataattaatccatgcctttacccatct
tatcatatatcacagattaagaacccacattttaattttacagttatcaa
tactaatgcaaccttagcatttttatattattaacatttttaggctcctt
tatccacatactttgattgcatttagtctcacagcaatgcttcaattaag
tagctggatttcaatttactaataaagaagtttatctccaaaagagatta
aatggagtcttccccttggactgggactctggctactactattgtccata
ttttctccagcatttttactatcagcagacaaatttctactatgtgatac
tcagtgcacctcccccctcctcctctagaaaatactcaagtgatgctgaa
caggtgaggcaatcttgatagctctgctcttcccttgtacagcatcattt
tctgaccttatcaattctgacataaactgctgtgtaaatccttttcagca
atatttattatgacactgtatttagggtagacacttgaatgcctagtcta
ctttctgcttcacaagaggagaattatcaatcctgtggtagaccacgagt
ttcataggtctatactagtgcaacatgcataatacatcatatatga
gaattcaagtcaatgaacccaaccaagaatgatttttctactcataaatg
agaatttttcttgagtgggcattatgtgttttttagtcagagatgtgggc
acgaatcttctttctggtaaaaattcttagtaagggaattttatttaaac
tagaaaagaacaactgaacaaccaaataaaacaaaatcaagcaaaattaa
ttattatgaggatcaacaaaggaaacaagactagaccttctcagcaatag
tctattcactccatcgatactccatctcattttcaagtgatcattaactt
ttaaatttcaaggactcagcctgtagaaacaaaccaccacaaccatcaac
atcaacataaccctgaagcaaaggaagaaacaaacagagaaatcccttct
agtcaagtatctttgaaagtcactatttcctatttgatgtttcactttta
caccaagttagaagcaaaagatgaagccatttgttttatcgctggcacag
tcaaaggtgaaatctttgcatacttcttgaattatctctcttgttttgct
ctacttggcatctaatttctgtccttgcattaggaaataaagcaattgga
gatttttattgcacacacgtagttacttgagcactagtctctttccaatg
gatttcacttaccaccagtgagagctcatttcaaataaccacactggatc
tcatatgaattgcaaagttccgtcctagtgagtttttgaagataaagaag
aaaagagtaactgatgtggcaggcacattttctcatggatgttggacacc
catgtttattcattatcctttatggctccttaaagctcttcaggagaaaa
caactcagcactccatgtcagcatacaaagcgatgacaaagtcagacatc
agcattttaaagtctcatattaaaattcctttcctggtgagtggagtcat
ggccctgctttgctttcagatctcagagctttcgagtcaatgtaaatgga
aaatccagaaactgtgtatcagtaaaagagttctaaaactgtcaatagca
tgatgtgtaagaaaattgctttagctgcaatttagtcagtaccttagcca
aataggtacggtaataatgctgtgctaatttcttctcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_17165126_17166240
seq2: B6Ng01-140B03.b_47_1142 (reverse)

seq1  TCATATATGAATGTATTTATGCATGTATGCACTAGTATAGAACCCTATGA  50
      ||||||||| ||||| |||||||||| ||||||||||||||  |||||||
seq2  TCATATATG-ATGTA-TTATGCATGT-TGCACTAGTATAGA--CCTATGA  45

seq1  AAACTTCGTGGGTCTTACCACAGGATTGATATATTCTCCTCTTTGTTTGA  100
      ||   |||| |||| |||||||||||||||| ||||||||||   | |||
seq2  AA--CTCGT-GGTC-TACCACAGGATTGATA-ATTCTCCTCT---TGTGA  87

seq1  AGGCAGAAAGTAGACTAGGCATTCAAGTGTTCCTAACCCTAAATACAGTG  150
      | ||||||||||||||||||||||||||||  || |||||||||||||||
seq2  A-GCAGAAAGTAGACTAGGCATTCAAGTGT--CT-ACCCTAAATACAGTG  133

seq1  TCATAATAAATATTTGCTGAAAAGGATTTTACACAGCAGTTTATGTCAGA  200
      |||||||||||| ||||||||||||| |||||||||||||||||||||||
seq2  TCATAATAAATA-TTGCTGAAAAGGA-TTTACACAGCAGTTTATGTCAGA  181

seq1  ATTGATAAGGTCAGAAAATGATGCTGTACAAGGGAAGAGCAGAGCTATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATAAGGTCAGAAAATGATGCTGTACAAGGGAAGAGCAGAGCTATCA  231

seq1  AGATTGCCTCACCTGTTCAGCATCACTTGAGTATTTTCTAGAGGAGGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGCCTCACCTGTTCAGCATCACTTGAGTATTTTCTAGAGGAGGAGG  281

seq1  GGGGAGGTGCACTGAGTATCACATAGTAGAAATTTGTCTGCTGATAGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGTGCACTGAGTATCACATAGTAGAAATTTGTCTGCTGATAGTAA  331

seq1  AAATGCTGGAGAAAATATGGACAATAGTAGTAGCCAGAGTCCCAGTCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTGGAGAAAATATGGACAATAGTAGTAGCCAGAGTCCCAGTCCAA  381

seq1  GGGGAAGACTCCATTTAATCTCTTTTGGAGATAAACTTCTTTATTAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGACTCCATTTAATCTCTTTTGGAGATAAACTTCTTTATTAGTAA  431

seq1  ATTGAAATCCAGCTACTTAATTGAAGCATTGCTGTGAGACTAAATGCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAATCCAGCTACTTAATTGAAGCATTGCTGTGAGACTAAATGCAAT  481

seq1  CAAAGTATGTGGATAAAGGAGCCTAAAAATGTTAATAATATAAAAATGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTATGTGGATAAAGGAGCCTAAAAATGTTAATAATATAAAAATGCT  531

seq1  AAGGTTGCATTAGTATTGATAACTGTAAAATTAAAATGTGGGTTCTTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTGCATTAGTATTGATAACTGTAAAATTAAAATGTGGGTTCTTAAT  581

seq1  CTGTGATATATGATAAGATGGGTAAAGGCATGGATTAATTATTATACATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATATATGATAAGATGGGTAAAGGCATGGATTAATTATTATACATG  631

seq1  TGTTTGAAACCTTTCTTACTGTAGCTATCTATATGAATAAAGGCAATCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGAAACCTTTCTTACTGTAGCTATCTATATGAATAAAGGCAATCAA  681

seq1  AGTATCTTTGGTTTATTTTTCTAAGGAAACTGAGATGCAAAGAGAAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTTTGGTTTATTTTTCTAAGGAAACTGAGATGCAAAGAGAAAAAA  731

seq1  AATAAAGAATCATGAAAACTCCTTAAGAAAACTATATGAAATGCTCAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGAATCATGAAAACTCCTTAAGAAAACTATATGAAATGCTCAATA  781

seq1  CATGTCTGTTATAAGGTGAAACGTTGAGTGTTCTGGGAAATCATAATAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTGTTATAAGGTGAAACGTTGAGTGTTCTGGGAAATCATAATAGT  831

seq1  AAAATAGAGGAAATAATTACTCCCATGCCTTCTATCACAAAAGAAAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGAGGAAATAATTACTCCCATGCCTTCTATCACAAAAGAAAGAAA  881

seq1  GTATTATCGATAATAAATAGACATATACGTAGGACGAAATAAGTATAGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATCGATAATAAATAGACATATACGTAGGACGAAATAAGTATAGTT  931

seq1  CTATGAATGAAAATATAAAATATATTGTTGACCTTTTTCCTTTTACTATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAATGAAAATATAAAATATATTGTTGACCTTTTTCCTTTTACTATA  981

seq1  GCAACGATTTATCCAAGTCAGTTGTCTACAGAGCTCAAGGCAAACCAGCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACGATTTATCCAAGTCAGTTGTCTACAGAGCTCAAGGCAAACCAGCC  1031

seq1  AGAAACTCCCCTTTCTAAGTTTTCACTGAAGTATGTCTTGTTGGAAGTTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTCCCCTTTCTAAGTTTTCACTGAAGTATGTCTTGTTGGAAGTTA  1081

seq1  ATGTATAGAGAATTC  1115
      |||||||||||||||
seq2  ATGTATAGAGAATTC  1096

seq1: chr5_17025231_17026406
seq2: B6Ng01-140B03.g_69_1208

seq1  GAATTCAAGTCAATGAACCCAACCAAGAATGATTTTTCTACTCATAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTCAATGAACCCAACCAAGAATGATTTTTCTACTCATAAATG  50

seq1  AGAATTTTTCTTGAGTGGGCATTATGTGTTTTTTAGTCAGAGATGTGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTTTCTTGAGTGGGCATTATGTGTTTTTTAGTCAGAGATGTGGGC  100

seq1  ACGAATCTTCTTTCTGGTAAAAATTCTTAGTAAGGGAATTTTATTTAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAATCTTCTTTCTGGTAAAAATTCTTAGTAAGGGAATTTTATTTAAAC  150

seq1  TAGAAAAGAACAACTGAACAACCAAATAAAACAAAATCAAGCAAAATTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAGAACAACTGAACAACCAAATAAAACAAAATCAAGCAAAATTAA  200

seq1  TTATTATGAGGATCAACAAAGGAAACAAGACTAGACCTTCTCAGCAATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATGAGGATCAACAAAGGAAACAAGACTAGACCTTCTCAGCAATAG  250

seq1  TCTATTCACTCCATCGATACTCCATCTCATTTTCAAGTGATCATTAACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCACTCCATCGATACTCCATCTCATTTTCAAGTGATCATTAACTT  300

seq1  TTAAATTTCAAGGACTCAGCCTGTAGAAACAAACCACCACAACCATCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTCAAGGACTCAGCCTGTAGAAACAAACCACCACAACCATCAAC  350

seq1  ATCAACATAACCCTGAAGCAAAGGAAGAAACAAACAGAGAAATCCCTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACATAACCCTGAAGCAAAGGAAGAAACAAACAGAGAAATCCCTTCT  400

seq1  AGTCAAGTATCTTTGAAAGTCACTATTTCCTATTTGATGTTTCACTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGTATCTTTGAAAGTCACTATTTCCTATTTGATGTTTCACTTTTA  450

seq1  CACCAAGTTAGAAGCAAAAGATGAAGCCATTTGTTTTATCGCTGGCACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGTTAGAAGCAAAAGATGAAGCCATTTGTTTTATCGCTGGCACAG  500

seq1  TCAAAGGTGAAATCTTTGCATACTTCTTGAATTATCTCTCTTGTTTTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGTGAAATCTTTGCATACTTCTTGAATTATCTCTCTTGTTTTGCT  550

seq1  CTACTTGGCATCTAATTTCTGTCCTTGCATTAGGAAATAAAGCAATTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTGGCATCTAATTTCTGTCCTTGCATTAGGAAATAAAGCAATTGGA  600

seq1  GATTTTTATTGCACACACGTAGTTACTTGAGCACTAGTCTCTTTCCAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTATTGCACACACGTAGTTACTTGAGCACTAGTCTCTTTCCAATG  650

seq1  GATTTCACTTACCACCAGTGAGAGCTCATTTCAAATAACCACACTGGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCACTTACCACCAGTGAGAGCTCATTTCAAATAACCACACTGGATC  700

seq1  TCATATGAATTGCAAAGTTCCGTCCTAGTGAGTTTTTGAAGATAAAGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGAATTGCAAAGTTCCGTCCTAGTGAGTTTTTGAAGATAAAGAAG  750

seq1  AAAAGAGTAACTGATGTGGCAGGCACATTTTCTCATGGATGTTGGACACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGTAACTGATGTGGCAGGCACATTTTCTCATGGATGTTGGACACC  800

seq1  CATGTTTATTCATTATCCTTTATGGCTCCTTAAAGCTCTTCAGGAGAAAA  850
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CATGTTTATTCATTATCCTTTATGGCTCCTTAAAGCTCTTCAGGAG-AAA  849

seq1  ACAACTCAAGCACTCCATGTCAGCAATACAAAGCGATGACAAAGTCAGAC  900
      ||||||| |||||||||||||||| |||||||||||||||||||||||||
seq2  ACAACTC-AGCACTCCATGTCAGC-ATACAAAGCGATGACAAAGTCAGAC  897

seq1  ATCAGGCATTTTAAAGCCCTCATATTAAAAATTCCTTTCCTGGGTGAGGT  950
      |||| |||||||||||  |||||||| |||||||||||||| ||||| ||
seq2  ATCA-GCATTTTAAAG-TCTCATATT-AAAATTCCTTTCCT-GGTGA-GT  942

seq1  GGAGGTCATGGCCCTGCTTTGCTTTCCAGATCCTCCAGAGCTTTCGAAGC  1000
      ||| ||||||||||||||||||||| ||||||   ||||||||||| || 
seq2  GGA-GTCATGGCCCTGCTTTGCTTT-CAGATC--TCAGAGCTTTCG-AGT  987

seq1  CAATGTAAATGGAAAAATCCAGAAACTGTGTTATCCAGTAAAAAGGAAGT  1050
      |||||||||||| ||||||||||||||||| ||| ||||||||  ||  |
seq2  CAATGTAAATGG-AAAATCCAGAAACTGTG-TAT-CAGTAAAA--GAGTT  1032

seq1  CTAAAAAACTGTCAAATAAGCAATGATGTGTAAAGAAACATGCTTTAAGC  1100
      ||  |||||||||||   ||| ||||||||| ||||||  |||||| |||
seq2  CT--AAAACTGTCAA--TAGC-ATGATGTGT-AAGAAAATTGCTTT-AGC  1075

seq1  TGCAAATTATAGTCATGTTAACACTAG-CAAATAAGTACAGTAAATTAAA  1149
      |||||  | |||||| ||  ||  ||| |||||| |||| ||||    ||
seq2  TGCAA--TTTAGTCA-GT--ACCTTAGCCAAATAGGTACGGTAA---TAA  1117

seq1  TGCCCTGTGCTAATTTTCTTTCTCAGA  1176
      ||  ||||||||||||   ||||||||
seq2  TG--CTGTGCTAATTT--CTTCTCAGA  1140