BAC Information

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BAC

Clone NameB6Ng01-140C22
Chromosome5 (Build37)
Map Location 73,862,735 - 74,024,951
singlet/doubletdoublet
Overlap geneLOC627733, Dcun1d4, BC031901, Sgcb
Upstream geneCorin, Nfxl1, Zar1, EG545758, Cnga1, LOC384275, Npal1, Txk, Tec, Slain2, Slc10a4, LOC667127, Fryl, Ociad1, Ociad2, LOC667154, LOC100042205, C130090K23Rik
Downstream geneSpata18, Usp46, 2700023E23Rik, Rasl11b, Scfd2, Fip1l1, Lnx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140C22.bB6Ng01-140C22.g
ACCDH938981DH938982
length948953
definitionDH938981|Mus musculus domesticus DNA, BAC clone: B6Ng01-140C22, 5' end.DH938982|Mus musculus domesticus DNA, BAC clone: B6Ng01-140C22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,023,999 - 74,024,951)(73,862,735 - 73,863,466)
sequence
gaattctcatgtccatgctcagtgtatttttaaattgtacatttgtttca
tgttctatttaaatttgttttgagaatttctttaaataaatatttttact
aaatccacagaaccctatattacaaagtattatttactgaatacaattca
tgagaaaaaagtgtatttttacgtctgtgggaaacacttgtgttttgata
catctccattgagcactttgaagtttgagcatatcctgctgctctgtaaa
gcgcgtggttactaggtatgctattttagactgcattttgggtagaccct
ctgacacactgacctgaaagcagagaagcggagcttggtgcacagtgaag
cggcactgttaaatctggccaccagggggcgtatgccttctcatgtgttc
atttcttcggttttgaacatagcacactgagaggacttactgcagcgctg
gggaaggtaggtgcaggaaggacccagggaggaaagcaaacacacattta
acagacagtattcgagaggtgaatatcaatgcaaagagatagaaataaaa
agaagaccccttccagactgtccagtgagaggttggggggtgggggatac
acaacacaaagcaggagctacctgccgactcggcaaccttttaaaatatt
cttcggtggcaatcttcttgcactgtgacagaagcaaaataaactttgtg
tgatagttttggtgatgaaaggtagaatttctacctgtttttgatgagtg
gttgtgttttctggttgtttgttttttgcttttttaaaggagttaaaaac
ttgttttaacttgatgaagaggagaccacttaagggctgctcatggaatc
ttttgaacgacatcaagaaggggcaaattttccagttatggccccaataa
tattacctatgtatttcagattggatgaacttctgttacataagctct
gaattcaagatgatagctgtgaggaggatgaggaaggcagaagcagagga
tttgcctatctatgtgatttccagttttgttgcttttcatgccaagttac
acagtcactggtctggagaaccacctccaagtgtgaggctgaagaaaggg
gtaggtaggtccagtcctggtgaacatggcaatggcctgcagtactacac
atttgagaatgactccagaggaatacagtaatgccttagggttctattgc
ggtggagagatatcacgaccatggcaactcatataaagaacaacacttaa
ttggggctggcttacagtttcagaagctgagtctgttgtcatcattgtgg
gatgcatggtatcacacaggcagacacggcgctggagaacctgagagctc
tacaccttgatctacaagcaggagcagaattgtgtcactgggcatagctt
gaacatatatgacactccacagtctgtctccacagtgacacactttctcc
aacaagtccacatttcctaatagtgctacttcctatgggccaaccattca
aactcacaagtctaggagggctatacctattcaaactaccacagtgtctt
taactcccatgctacagcagggaacttcaggctgggtggcttaaagaaca
gacatatatttctatagcactgcagaaagaccttcaagatatcggcctat
ttctggctccttttaagtaagcatcctgctttctggcttgcaactggctg
gcttctcgttatatccctgtttgagagagccatgtagtctctcttcttat
agggatataattcccattcaaaggccctatcactaaacaccattacattg
ggggtgggggtattgtgttagtttgcttgactgccacagcaaagcaccat
agactggtggggctacagcaactaaaattgattctactgttctagaggcc
aga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_74023999_74024951
seq2: B6Ng01-140C22.b_45_992 (reverse)

seq1  AGAGCTTTATTGTAAACAG-AGGTCAT-CAATCTGAAATACATAGGT-AT  47
      |||||||   ||| ||||| || |||| ||||||||||||||||||| ||
seq2  AGAGCTT--ATGT-AACAGAAGTTCATCCAATCTGAAATACATAGGTAAT  47

seq1  ATTTTTGTGTGGCATAACTTGTAAACTTTGCCCC-TCTTGATGTCGTTCA  96
      ||| ||| | | |||||| || ||| |||||||| |||||||||||||||
seq2  ATTATTG-GGGCCATAAC-TGGAAAATTTGCCCCTTCTTGATGTCGTTCA  95

seq1  AAAGATTACCATGAGCAGCACTTTAGTGGTCTCCTCTTCATCAAGTTAAA  146
      ||||||| ||||||||||| ||| ||||||||||||||||||||||| ||
seq2  AAAGATT-CCATGAGCAGCCCTTAAGTGGTCTCCTCTTCATCAAGTT-AA  143

seq1  AACAAGTTTTTAACTCCTTTAAAAAAGCAAAAAACAAACAAACAAGAAAA  196
      ||||||||||||||||||||||||||||||||||||||| ||| ||||||
seq2  AACAAGTTTTTAACTCCTTTAAAAAAGCAAAAAACAAAC-AACCAGAAAA  192

seq1  CACAAACCACTCATCAAAAACAGGTAGAAATTCTACCTTTCATCACCAAA  246
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAC-AACCACTCATCAAAAACAGGTAGAAATTCTACCTTTCATCACCAAA  241

seq1  ACTATCACACAAAGTTTATTTTGCTTCTGTCACAGTGCAAGAAGATTGCC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCACACAAAGTTTATTTTGCTTCTGTCACAGTGCAAGAAGATTGCC  291

seq1  ACCGAAGAATATTTTAAAAGGTTGCCGAGTCGGCAGGTAGCTCCTGCTTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAAGAATATTTTAAAAGGTTGCCGAGTCGGCAGGTAGCTCCTGCTTT  341

seq1  GTGTTGTGTATCCCCCACCCCCCAACCTCTCACTGGACAGTCTGGAAGGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGTGTATCCCCCACCCCCCAACCTCTCACTGGACAGTCTGGAAGGG  391

seq1  GTCTTCTTTTTATTTCTATCTCTTTGCATTGATATTCACCTCTCGAATAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTTTTTATTTCTATCTCTTTGCATTGATATTCACCTCTCGAATAC  441

seq1  TGTCTGTTAAATGTGTGTTTGCTTTCCTCCCTGGGTCCTTCCTGCACCTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTTAAATGTGTGTTTGCTTTCCTCCCTGGGTCCTTCCTGCACCTA  491

seq1  CCTTCCCCAGCGCTGCAGTAAGTCCTCTCAGTGTGCTATGTTCAAAACCG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCCAGCGCTGCAGTAAGTCCTCTCAGTGTGCTATGTTCAAAACCG  541

seq1  AAGAAATGAACACATGAGAAGGCATACGCCCCCTGGTGGCCAGATTTAAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATGAACACATGAGAAGGCATACGCCCCCTGGTGGCCAGATTTAAC  591

seq1  AGTGCCGCTTCACTGTGCACCAAGCTCCGCTTCTCTGCTTTCAGGTCAGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCGCTTCACTGTGCACCAAGCTCCGCTTCTCTGCTTTCAGGTCAGT  641

seq1  GTGTCAGAGGGTCTACCCAAAATGCAGTCTAAAATAGCATACCTAGTAAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAGAGGGTCTACCCAAAATGCAGTCTAAAATAGCATACCTAGTAAC  691

seq1  CACGCGCTTTACAGAGCAGCAGGATATGCTCAAACTTCAAAGTGCTCAAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCGCTTTACAGAGCAGCAGGATATGCTCAAACTTCAAAGTGCTCAAT  741

seq1  GGAGATGTATCAAAACACAAGTGTTTCCCACAGACGTAAAAATACACTTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGTATCAAAACACAAGTGTTTCCCACAGACGTAAAAATACACTTT  791

seq1  TTTCTCATGAATTGTATTCAGTAAATAATACTTTGTAATATAGGGTTCTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCATGAATTGTATTCAGTAAATAATACTTTGTAATATAGGGTTCTG  841

seq1  TGGATTTAGTAAAAATATTTATTTAAAGAAATTCTCAAAACAAATTTAAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTAGTAAAAATATTTATTTAAAGAAATTCTCAAAACAAATTTAAA  891

seq1  TAGAACATGAAACAAATGTACAATTTAAAAATACACTGAGCATGGACATG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACATGAAACAAATGTACAATTTAAAAATACACTGAGCATGGACATG  941

seq1  AGAATTC  953
      |||||||
seq2  AGAATTC  948

seq1: chr5_73862735_73863466
seq2: B6Ng01-140C22.g_67_798

seq1  GAATTCAAGATGATAGCTGTGAGGAGGATGAGGAAGGCAGAAGCAGAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGATGATAGCTGTGAGGAGGATGAGGAAGGCAGAAGCAGAGGA  50

seq1  TTTGCCTATCTATGTGATTTCCAGTTTTGTTGCTTTTCATGCCAAGTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTATCTATGTGATTTCCAGTTTTGTTGCTTTTCATGCCAAGTTAC  100

seq1  ACAGTCACTGGTCTGGAGAACCACCTCCAAGTGTGAGGCTGAAGAAAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCACTGGTCTGGAGAACCACCTCCAAGTGTGAGGCTGAAGAAAGGG  150

seq1  GTAGGTAGGTCCAGTCCTGGTGAACATGGCAATGGCCTGCAGTACTACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTAGGTCCAGTCCTGGTGAACATGGCAATGGCCTGCAGTACTACAC  200

seq1  ATTTGAGAATGACTCCAGAGGAATACAGTAATGCCTTAGGGTTCTATTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGAATGACTCCAGAGGAATACAGTAATGCCTTAGGGTTCTATTGC  250

seq1  GGTGGAGAGATATCACGACCATGGCAACTCATATAAAGAACAACACTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGAGATATCACGACCATGGCAACTCATATAAAGAACAACACTTAA  300

seq1  TTGGGGCTGGCTTACAGTTTCAGAAGCTGAGTCTGTTGTCATCATTGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGCTGGCTTACAGTTTCAGAAGCTGAGTCTGTTGTCATCATTGTGG  350

seq1  GATGCATGGTATCACACAGGCAGACACGGCGCTGGAGAACCTGAGAGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCATGGTATCACACAGGCAGACACGGCGCTGGAGAACCTGAGAGCTC  400

seq1  TACACCTTGATCTACAAGCAGGAGCAGAATTGTGTCACTGGGCATAGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCTTGATCTACAAGCAGGAGCAGAATTGTGTCACTGGGCATAGCTT  450

seq1  GAACATATATGACACTCCACAGTCTGTCTCCACAGTGACACACTTTCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATATATGACACTCCACAGTCTGTCTCCACAGTGACACACTTTCTCC  500

seq1  AACAAGTCCACATTTCCTAATAGTGCTACTTCCTATGGGCCAACCATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTCCACATTTCCTAATAGTGCTACTTCCTATGGGCCAACCATTCA  550

seq1  AACTCACAAGTCTAGGAGGGCTATACCTATTCAAACTACCACAGTGTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACAAGTCTAGGAGGGCTATACCTATTCAAACTACCACAGTGTCTT  600

seq1  TAACTCCCATGCTACAGCAGGGAACTTCAGGCTGGGTGGCTTAAAGAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCCCATGCTACAGCAGGGAACTTCAGGCTGGGTGGCTTAAAGAACA  650

seq1  GACATATATTTCTATAGCACTGCAGAAAGACCTTCAAGATATCGGCCTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATATATTTCTATAGCACTGCAGAAAGACCTTCAAGATATCGGCCTAT  700

seq1  TTCTGGCTCCTTTTAAGTAAGCATCCTGCTTT  732
      ||||||||||||||||||||||||||||||||
seq2  TTCTGGCTCCTTTTAAGTAAGCATCCTGCTTT  732