BAC Information

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BAC

Clone NameB6Ng01-140E01
Chromosome5 (Build37)
Map Location 53,504,401 - 53,558,917
singlet/doubletdoublet
Overlap gene2310045A20Rik
Upstream geneDhx15, Sod3, Gm447, LOC100041805, Lgi2, LOC545750, D5Ertd135e, Pi4k2b, Zcchc4, Anapc4, Slc34a2
Downstream gene1810013D10Rik, LOC100041198, LOC100041911, Rbpj, Cckar, Tbc1d19, Stim2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140E01.bB6Ng01-140E01.g
ACCDH939033DH939034
length1,1791,082
definitionDH939033|Mus musculus domesticus DNA, BAC clone: B6Ng01-140E01, 5' end.DH939034|Mus musculus domesticus DNA, BAC clone: B6Ng01-140E01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,504,401 - 53,505,592)(53,557,829 - 53,558,917)
sequence
gaattctctaattgcaggcaaaatgccccacaggacaggatggactctga
cagctaccagcttatatacaccaagtcatctcatttggttctctcagctg
cagaaagaagtaggcaaaatattcttccattttatagaacaaacagaggc
ccaagacagcttttcctttgttccgcattgttctacaagtagcagcaggg
tcagaatcttagcagcttccttccccacagctggtggggctaacaccagt
cctgtaccactgaacacaagaccatttcatgtggcaaaggctgtggcaat
tgactcaacatcagagcatcatacaaacttgggagaaaaatgaggctggc
tggagctgaacacacaagagatacgaacaacttgctgataaaccattaaa
atgtaaaatcaaaaaacattaaaaacaaacaaacttcaaactcctgaaat
gaataggagtccaaatttctagtgacattcctcaccatatgctgttttgg
ggaggctcccagctttcaagcccgtgccttctttactgactattaaccag
cacccagagggaattaacatggttggttgtttcactccctcatctgccat
aagtaccagccatccacacctccaattcctgtggtgtaatgagggaactg
cggactccatcagctccccaaggaaatgccagcagctaaagttttggccc
ctaggaagcccactcttctatgccctgtcacctgcccatcacctcttcag
tcacctgctctcctgcgtggaccaatcttacttcaaaacggctggcatgt
ttccactctgaaccaggacctttagacatcagtgaaaggaatgaagaaga
tgcttcagctctctgcatgaattcacacaggctggtggggccgccgtggg
caggcacagtttggaagcctgtgagcccctccttttactctttctagtct
tggttcaagcatgtttacagaacggtagtgtgcacgactcagaggcttgc
tgcaaatgtctatctaggctcaccgccatcagaatcttcatggggtctga
ttcttgcatgcccagtaaagctaaaccgcagtaggctagaactaaacaag
aacattatttttgtataagttatgttatttgtatccattaagcttttagg
caatatgtgtgggcagggtgaatgattat
gaattcaggctaaatgagatcaccaggaagtaatgccccccaagctctgc
acctctccctaaccatggccttggcctccttagggcacacaacccctgct
tatccccaactgtctcagagcagggggactcaggagcggaaaggaaggta
tattactggagctggtgctctattctcccagaggcatctgcttttctagg
tttcgttggaagggcccagaagccacctgcagcagcccggtacacatatc
atcaaattcttctctgctggtatggtgttcttgcgtgggtctataatagc
atcatctggctaacccaagagagagagagagactggtgtcatatctcata
cccagcttcctaacaaatgagaaaaatgcagaaagcttgattttgaaaat
tgaaggtagaaaatcagtttacatatctattggatcttttctctggtccc
ttatccaaagaatagccataaggctgctatgcctgtgtgtctggtttctg
gaataccacttctggcaaggccatccttctgctagtctgcatgtctggct
agccccagaatgttcctgaagacccatttgtagaaagtgtgtctgtgttc
tctctgtgctgttgtcctggcatgtcttgccgcattgaccagtggactag
attagacctctcttcactgtggtttggatgtggcttgtccaccaagagtt
catgtgttagaagcttggtcgctagtgtggcgttataggaggaaagggaa
ggttcaagagatgggagtcaggttctggaaaagtggctgaacaagcagga
ggatctgaatttaaattcctaccacccagatgagatgatgcatggctata
atgcaggtgctggagaggcagaggatccaggaggatctaggaagctggct
ggtcatgtcgtcttcctgaattggtgaggtcaggtttggaaaaggtcaca
gtctcagacttaagccgagagaaatcaaagcactttggttcaacatgtac
atacataatgaatgcggaactgctgtctctgacctacagccgactctcag
aagggatcatgctgtctcatgaacttggacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_53504401_53505592
seq2: B6Ng01-140E01.b_47_1225

seq1  GAATTCTCTAATTGCAGGCAAAATGCCCCACAGGACAGGATGGACTCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAATTGCAGGCAAAATGCCCCACAGGACAGGATGGACTCTGA  50

seq1  CAGCTACCAGCTTATATACACCAAGTCATCTCATTTGGTTCTCTCAGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTACCAGCTTATATACACCAAGTCATCTCATTTGGTTCTCTCAGCTG  100

seq1  CAGAAAGAAGTAGGCAAAATATTCTTCCATTTTATAGAACAAACAGAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGAAGTAGGCAAAATATTCTTCCATTTTATAGAACAAACAGAGGC  150

seq1  CCAAGACAGCTTTTCCTTTGTTCCGCATTGTTCTACAAGTAGCAGCAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACAGCTTTTCCTTTGTTCCGCATTGTTCTACAAGTAGCAGCAGGG  200

seq1  TCAGAATCTTAGCAGCTTCCTTCCCCACAGCTGGTGGGGCTAACACCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATCTTAGCAGCTTCCTTCCCCACAGCTGGTGGGGCTAACACCAGT  250

seq1  CCTGTACCACTGAACACAAGACCATTTCATGTGGCAAAGGCTGTGGCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTACCACTGAACACAAGACCATTTCATGTGGCAAAGGCTGTGGCAAT  300

seq1  TGACTCAACATCAGAGCATCATACAAACTTGGGAGAAAAATGAGGCTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCAACATCAGAGCATCATACAAACTTGGGAGAAAAATGAGGCTGGC  350

seq1  TGGAGCTGAACACACAAGAGATACGAACAACTTGCTGATAAACCATTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTGAACACACAAGAGATACGAACAACTTGCTGATAAACCATTAAA  400

seq1  ATGTAAAATCAAAAAACATTAAAAACAAACAAACTTCAAACTCCTGAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAAATCAAAAAACATTAAAAACAAACAAACTTCAAACTCCTGAAAT  450

seq1  GAATAGGAGTCCAAATTTCTAGTGACATTCCTCACCATATGCTGTTTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGGAGTCCAAATTTCTAGTGACATTCCTCACCATATGCTGTTTTGG  500

seq1  GGAGGCTCCCAGCTTTCAAGCCCGTGCCTTCTTTACTGACTATTAACCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTCCCAGCTTTCAAGCCCGTGCCTTCTTTACTGACTATTAACCAG  550

seq1  CACCCAGAGGGAATTAACATGGTTGGTTGTTTCACTCCCTCATCTGCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGAGGGAATTAACATGGTTGGTTGTTTCACTCCCTCATCTGCCAT  600

seq1  AAGTACCAGCCATCCACACCTCCAATTCCTGTGGTGTAATGAGGGAACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACCAGCCATCCACACCTCCAATTCCTGTGGTGTAATGAGGGAACTG  650

seq1  CGGACTCCATCAGCTCCCCAAGGAAATGCCAGCAGCTAAAGTTTTGGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACTCCATCAGCTCCCCAAGGAAATGCCAGCAGCTAAAGTTTTGGCCC  700

seq1  CTAGGAAGCCCACTCTTCTATGCCCTGTCACCTGCCCATCACCTCTTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAAGCCCACTCTTCTATGCCCTGTCACCTGCCCATCACCTCTTCAG  750

seq1  TCACCTGCTCTCCTGCGTGGACCAATCTTACTTCAAAACGGCTGGCATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGCTCTCCTGCGTGGACCAATCTTACTTCAAAACGGCTGGCATGT  800

seq1  TTCCACTCTGAACCAGGACCTTTAGACATCAGTGAAAGGAATGAAGAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTCTGAACCAGGACCTTTAGACATCAGTGAAAGGAATGAAGAAGA  850

seq1  TGCTTCAGCTCTCTGCATGAATTCACACAGGGCTGGTGGGGCCGCCGTGG  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGCTTCAGCTCTCTGCATGAATTCACACA-GGCTGGTGGGGCCGCCGTGG  899

seq1  GCAGGCACAGTTTGGAAGCCTGTGAGCCCCTCCTTTTTACTCTTTCTAGT  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCAGGCACAGTTTGGAAGCCTGTGAGCCCCTCC-TTTTACTCTTTCTAGT  948

seq1  CTTGGTCCAAGCATGTTTTACAGAACGGTAGTGTGGCACGACCCAGAGGC  1000
      |||||| |||||||| |||||||||||||||||| ||||||| |||||||
seq2  CTTGGTTCAAGCATG-TTTACAGAACGGTAGTGT-GCACGACTCAGAGGC  996

seq1  TTGCTGCAAATGTCTAATCTAGGCTCA-CGCCATCAGAATCCTCATGGGG  1049
      ||||||||||||||| ||||||||||| ||||||||||||| ||||||||
seq2  TTGCTGCAAATGTCT-ATCTAGGCTCACCGCCATCAGAATCTTCATGGGG  1045

seq1  TCTGATTCTTGCATGCCCAGTAAAGCTAAGACGCAGTAGGCTAGAACTTA  1099
      |||||||||||||||||||||||||||||  |||||||||||||||| ||
seq2  TCTGATTCTTGCATGCCCAGTAAAGCTAAACCGCAGTAGGCTAGAAC-TA  1094

seq1  GACATAGAAACATTATTTTGTAATAAGTTATGTTATTTTAATTATCCATT  1149
       ||| || |||||||||||   ||||||||||||||||    ||||||||
seq2  AACA-AG-AACATTATTTTTGTATAAGTTATGTTATTT---GTATCCATT  1139

seq1  ATAGTGCTTTTAAGGCAAATATGTGTGTGGGCAGG----TTGATTAT  1192
      |    |||||| |||||   || ||||||||||||     |||||||
seq2  A---AGCTTTT-AGGCA---ATATGTGTGGGCAGGGTGAATGATTAT  1179

seq1: chr5_53557829_53558917
seq2: B6Ng01-140E01.g_68_1149 (reverse)

seq1  AGGTCC-----CATGAGAACAGCCATGATCCCTTCTGAGAGTCGTGCCTG  45
      ||||||     |||||| |||| ||||||||||||||||||||  | |||
seq2  AGGTCCAAGTTCATGAG-ACAG-CATGATCCCTTCTGAGAGTC--GGCTG  46

seq1  TAGTGTCAGAGACACGCGTGTGCCGCATACA-TATGTATGTACATGTGTG  94
      ||| |||||||||| ||  || |||||| || ||||||||||||||| ||
seq2  TAG-GTCAGAGACA-GC-AGTTCCGCATTCATTATGTATGTACATGT-TG  92

seq1  GAAACCAAAGGTGCTTTGATTTCTCTCGGCCTTAAGTCTGAGACTGTGAC  144
        ||||||| ||||||||||||||||||| ||||||||||||||||||||
seq2  --AACCAAA-GTGCTTTGATTTCTCTCGG-CTTAAGTCTGAGACTGTGAC  138

seq1  CTTTTCCAAACCTGGACCTCACCAATTCAGGAAGACGACATGGCCAGCCA  194
      ||||||||||||| |||||||||||||||||||||||||||| |||||||
seq2  CTTTTCCAAACCT-GACCTCACCAATTCAGGAAGACGACATGACCAGCCA  187

seq1  GCTTCCTGGATCCTCCTGGATCCTCTGCCTCTCCAGCACCTGCATTATAG  244
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTAGATCCTCCTGGATCCTCTGCCTCTCCAGCACCTGCATTATAG  237

seq1  CCATGCATCATCTCATCTGGGTGGTAGGAATTTAAATTCAGGTCCTCCTG  294
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCATGCATCATCTCATCTGGGTGGTAGGAATTTAAATTCAGATCCTCCTG  287

seq1  CTTGTTCAGCCACTTTTCCAGACCCTGACTCCCATCTCTTGAACCTTCCC  344
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTTGTTCAGCCACTTTTCCAGAACCTGACTCCCATCTCTTGAACCTTCCC  337

seq1  TTTCCTCCTATAACGCCACACTAGCGACCAAGCTTCTAACACATGAACTC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCCTATAACGCCACACTAGCGACCAAGCTTCTAACACATGAACTC  387

seq1  TTGGTGGACAAGCCACATCCAAACCACAGTGAAGAGAGGTCTAATCTAGT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGACAAGCCACATCCAAACCACAGTGAAGAGAGGTCTAATCTAGT  437

seq1  CCACTGGTCAATGCGGCAAGACATGCCAGGACAACAGCACAGAGAGAACA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGTCAATGCGGCAAGACATGCCAGGACAACAGCACAGAGAGAACA  487

seq1  CAGACACACTTTCTACAAATGGGTCTTCAGGAACATTCTGGGGCTAGCCA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACACTTTCTACAAATGGGTCTTCAGGAACATTCTGGGGCTAGCCA  537

seq1  GACATGCAGACTAGCAGAAGGATGGCCTTGCCAGAAGTGGTATTCCAGAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGCAGACTAGCAGAAGGATGGCCTTGCCAGAAGTGGTATTCCAGAA  587

seq1  ACCAGACACACAGGCATAGCAGCCTTATGGCTATTCTTTGGATAAGGGAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACACACAGGCATAGCAGCCTTATGGCTATTCTTTGGATAAGGGAC  637

seq1  CAGAGAAAAGATCCAATAGATATGTAAACTGATTTTCTACCTTCAATTTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAAAGATCCAATAGATATGTAAACTGATTTTCTACCTTCAATTTT  687

seq1  CAAAATCAAGCTTTCTGCATTTTTCTCATTTGTTAGGAAGCTGGGTATGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCAAGCTTTCTGCATTTTTCTCATTTGTTAGGAAGCTGGGTATGA  737

seq1  GATATGACACCAGTCTCTCTCTCTCTCTTGGGTTAGCCAGATGATGCTAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGACACCAGTCTCTCTCTCTCTCTTGGGTTAGCCAGATGATGCTAT  787

seq1  TATAGACCCACGCAAGAACACCATACCAGCAGAGAAGAATTTGATGATAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACCCACGCAAGAACACCATACCAGCAGAGAAGAATTTGATGATAT  837

seq1  GTGTACCGGGCTGCTGCAGGTGGCTTCTGGGCCCTTCCAACGAAACCTAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACCGGGCTGCTGCAGGTGGCTTCTGGGCCCTTCCAACGAAACCTAG  887

seq1  AAAAGCAGATGCCTCTGGGAGAATAGAGCACCAGCTCCAGTAATATACCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAGATGCCTCTGGGAGAATAGAGCACCAGCTCCAGTAATATACCT  937

seq1  TCCTTTCCGCTCCTGAGTCCCCCTGCTCTGAGACAGTTGGGGATAAGCAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCCGCTCCTGAGTCCCCCTGCTCTGAGACAGTTGGGGATAAGCAG  987

seq1  GGGTTGTGTGCCCTAAGGAGGCCAAGGCCATGGTTAGGGAGAGGTGCAGA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGTGTGCCCTAAGGAGGCCAAGGCCATGGTTAGGGAGAGGTGCAGA  1037

seq1  GCTTGGGGGGCATTACTTCCTGGTGATCTCATTTAGCCTGAATTC  1089
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGGGGCATTACTTCCTGGTGATCTCATTTAGCCTGAATTC  1082