BAC Information

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BAC

Clone NameB6Ng01-140G13
Chromosome5 (Build37)
Map Location 144,923,467 - 145,079,162
singlet/doubletdoublet
Overlap geneLmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1
Upstream geneLOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm
Downstream gene4930568B11Rik, Nptx2, EG621967, Tmem130, LOC100039427, Trrap, Smurf1, AW146299, EG231885, EG666992, 1700018F24Rik, Arpc1a, Arpc1b, Pdap1, Bud31, Ptcd1, Cpsf4, Atp5j2, Zkscan14, Zkscan5, EG622116, Zfp655, LOC677270, EG666311
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140G13.bB6Ng01-140G13.g
ACCDH939147DH939148
length748979
definitionDH939147|Mus musculus domesticus DNA, BAC clone: B6Ng01-140G13, 5' end.DH939148|Mus musculus domesticus DNA, BAC clone: B6Ng01-140G13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,923,467 - 144,924,214)(145,078,168 - 145,079,162)
sequence
gaattctgcatttccagtgcaagataagcaggggaaaggccccagggcgg
ggggcgggggagtgtcccccatcccttcccacatacaccagtctctttga
tataatctgcagcttgcacatctgaggtccacccttatgaaccttgatgt
ctgtggctgctgcaggcagacaatgagggggagacagagagggttaactg
ggattaggatggtaaattctctcctcaccagctttaccattgtgagtctc
ctttgatccctctgagctgattgcttctgtagaattgggggtctgtttta
cccagaagcactgttacctagattgaatatgatagcatgaaccaagctcc
cggaagagtattcagtggctcttaggcacctggcttcctgtcgtgtctgt
ctctgtctgtgcctgtgcccctccacccctttctctctctctctctttct
ctccccctctctctctctctctctctctctcacacacacacacacacaca
cacacacacacacacacacacacacacacacacacggcttcctgtagcta
gaaacttgccatggatttttttggaactgcccttgattaccttgagccat
ttgcattagagaatccatccagagatgggcaggctactcaacttaaaaac
aaatggagaggagttgttgacttggaacctttgggcctgctgtcaaatat
ggtgaccagtcaggtgccttccaggagccatctggctggagctcaggc
gaattctgcgttaaggattctgaaaacacagcgaagagcgagtacgcgtt
taaagagtgacatgtccgtctctgctcagtgtccaggagtctgagaaact
cactgactatgttcaaaggctggaactagctagaggcctgatgcctgtgg
cagggtgtggggcaggctggcttcacgctctctggctgcctaaaacgctg
gtgaagcaatagacagtcgacacagggtacatctgcagtgatgttatatg
aggagttgcagcaccactctgtttaatggaatcgatcgcatacggttttt
gaaaccccggctcgtgctcggtggggtttgtgacttcccagtgtcatggc
gaccagttgcagctctgaatcaccatccgtgtaatgacatgcagccagcc
tatgtagcagatagtaatctcttagacatttggggttctggaagcagcta
aactgataacagggttccaaaagtaagaattaggaagaaacatgccattg
tgctgggcatcaggggggaaaggtctgaccctctcattagcacatatggc
actctgactcaccgccattcagctctccttttaatgttttatggctcttg
ccattgtttaaataagacttctgttccacaccttactttattcagctgca
agtcccataacatttgaatcagctatttccacagcaacagtgttgttata
aaacaccgccctgacactccagtttcaggggaaagtctgcagtgaaggcg
aaggttctttctgcgcaaagggaagggcgagaccgacactcctctcaggt
tcactttggtccagtgtccgtttgcttctgtcacgtctcaggttttacac
attaccttcctgtattctctaggtagaagtcccctcaccggcgttgtttg
ggggacttaatgatatcttcttttgactggatagtttccttggttctgtt
aaaaatctactatgctacttaaaccccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_144923467_144924214
seq2: B6Ng01-140G13.b_44_791

seq1  GAATTCTGCATTTCCAGTGCAAGATAAGCAGGGGAAAGGCCCCAGGGCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCATTTCCAGTGCAAGATAAGCAGGGGAAAGGCCCCAGGGCGG  50

seq1  GGGGCGGGGGAGTGTCCCCCATCCCTTCCCACATACACCAGTCTCTTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCGGGGGAGTGTCCCCCATCCCTTCCCACATACACCAGTCTCTTTGA  100

seq1  TATAATCTGCAGCTTGCACATCTGAGGTCCACCCTTATGAACCTTGATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCTGCAGCTTGCACATCTGAGGTCCACCCTTATGAACCTTGATGT  150

seq1  CTGTGGCTGCTGCAGGCAGACAATGAGGGGGAGACAGAGAGGGTTAACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCTGCTGCAGGCAGACAATGAGGGGGAGACAGAGAGGGTTAACTG  200

seq1  GGATTAGGATGGTAAATTCTCTCCTCACCAGCTTTACCATTGTGAGTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAGGATGGTAAATTCTCTCCTCACCAGCTTTACCATTGTGAGTCTC  250

seq1  CTTTGATCCCTCTGAGCTGATTGCTTCTGTAGAATTGGGGGTCTGTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATCCCTCTGAGCTGATTGCTTCTGTAGAATTGGGGGTCTGTTTTA  300

seq1  CCCAGAAGCACTGTTACCTAGATTGAATATGATAGCATGAACCAAGCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAGCACTGTTACCTAGATTGAATATGATAGCATGAACCAAGCTCC  350

seq1  CGGAAGAGTATTCAGTGGCTCTTAGGCACCTGGCTTCCTGTCGTGTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAGAGTATTCAGTGGCTCTTAGGCACCTGGCTTCCTGTCGTGTCTGT  400

seq1  CTCTGTCTGTGCCTGTGCCCCTCCACCCCTTTCTCTCTCTCTCTCTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTGTGCCTGTGCCCCTCCACCCCTTTCTCTCTCTCTCTCTTTCT  450

seq1  CTCCCCCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACA  500

seq1  CACACACACACACACACACACACACACACACACACGGCTTCCTGTAGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACGGCTTCCTGTAGCTA  550

seq1  GAAACTTGCCATGGATTTTTTTGGAACTGCCCTTGATTACCTTGAGCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTGCCATGGATTTTTTTGGAACTGCCCTTGATTACCTTGAGCCAT  600

seq1  TTGCATTAGAGAATCCTTCCACAGATGGGCAGGCTACCCAACTTAAAAAC  650
      |||||||||||||||| |||| ||||||||||||||| ||||||||||||
seq2  TTGCATTAGAGAATCCATCCAGAGATGGGCAGGCTACTCAACTTAAAAAC  650

seq1  AAATGGCGAGGAGTTG-TGACTTGGAACCTTTGGGCCTGCTGCCAAATAT  699
      |||||| ||||||||| ||||||||||||||||||||||||| |||||||
seq2  AAATGGAGAGGAGTTGTTGACTTGGAACCTTTGGGCCTGCTGTCAAATAT  700

seq1  GGTGACCAGCCAGGTGCCTTCCAGGAGCCAGCAGGGCTGGAGCTCAGGC  748
      ||||||||| |||||||||||||||||||| |  |||||||||||||||
seq2  GGTGACCAGTCAGGTGCCTTCCAGGAGCCATC-TGGCTGGAGCTCAGGC  748

seq1: chr5_145078168_145079162
seq2: B6Ng01-140G13.g_66_1044 (reverse)

seq1  GTGGGAGTTTAAGTAGATATAGTAAGGTATTTTAAACAGAACCAAAGGAA  50
      ||||| ||||||||||  ||||||    ||||| |||||||||||  | |
seq2  GTGGG-GTTTAAGTAG-CATAGTA---GATTTTTAACAGAACCAA--GGA  43

seq1  AACTATGCAAGTCAAAAGAAGATATCATTAAGTCCCCCAAAGCAAAGCCT  100
      |||||| | |||||||||||||||||||||||||||||||| ||| ||| 
seq2  AACTAT-CCAGTCAAAAGAAGATATCATTAAGTCCCCCAAA-CAACGCC-  90

seq1  GCTGAGGTGAACTTTCTAACCTAGAGAAATACAGGAAGTAAATGTGTAAA  150
      | ||||| ||   |||| |||||||| |||||||||||  ||||||||||
seq2  GGTGAGGGGA--CTTCT-ACCTAGAG-AATACAGGAAGGTAATGTGTAAA  136

seq1  AGCCTGAGACCGTGGACAGAAGCAAACGGACAACTGGACCAAAGTGAACC  200
      | ||||||| ||| ||||||||||||||||| ||||||||||||||||||
seq2  A-CCTGAGA-CGT-GACAGAAGCAAACGGAC-ACTGGACCAAAGTGAACC  182

seq1  TTGAGAGGAGTGTCGGTCTCGCCCTTCCCTCTGCGCAGAAGGAACCTTCG  250
       ||||||||||||||||||||||||||||| ||||||||| |||||||||
seq2  -TGAGAGGAGTGTCGGTCTCGCCCTTCCCTTTGCGCAGAAAGAACCTTCG  231

seq1  CCTTCACTGCAGACTTTCCCCTGAAACTGGAGTGTCAGGGCGGTG-TTTA  299
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCTTCACTGCAGACTTTCCCCTGAAACTGGAGTGTCAGGGCGGTGTTTTA  281

seq1  TAACAACACTGTTGCTGTGGAAATAGCTGATTC-AATGTTAT-GGACTTG  347
      ||||||||||||||||||||||||||||||||| |||||||| |||||||
seq2  TAACAACACTGTTGCTGTGGAAATAGCTGATTCAAATGTTATGGGACTTG  331

seq1  CAGCTGAATAAAGTAAGGTGTGGAACAGAAGTCTTATTTAAACAATGGCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGAATAAAGTAAGGTGTGGAACAGAAGTCTTATTTAAACAATGGCA  381

seq1  AGAGCCATAAAACATTAAAAGGAGAGCTGAATGGCGGTGAGTCAGAGTGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCATAAAACATTAAAAGGAGAGCTGAATGGCGGTGAGTCAGAGTGC  431

seq1  CATATGTGCTAATGAGAGGGTCAGACCTTTCCCCCCTGATGCCCAGCACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTGCTAATGAGAGGGTCAGACCTTTCCCCCCTGATGCCCAGCACA  481

seq1  ATGGCATGTTTCTTCCTAATTCTTACTTTTGGAACCCTGTTATCAGTTTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATGTTTCTTCCTAATTCTTACTTTTGGAACCCTGTTATCAGTTTA  531

seq1  GCTGCTTCCAGAACCCCAAATGTCTAAGAGATTACTATCTGCTACATAGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTCCAGAACCCCAAATGTCTAAGAGATTACTATCTGCTACATAGG  581

seq1  CTGGCTGCATGTCATTACACGGATGGTGATTCAGAGCTGCAACTGGTCGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGCATGTCATTACACGGATGGTGATTCAGAGCTGCAACTGGTCGC  631

seq1  CATGACACTGGGAAGTCACAAACCCCACCGAGCACGAGCCGGGGTTTCAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACACTGGGAAGTCACAAACCCCACCGAGCACGAGCCGGGGTTTCAA  681

seq1  AAACCGTATGCGATCGATTCCATTAAACAGAGTGGTGCTGCAACTCCTCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCGTATGCGATCGATTCCATTAAACAGAGTGGTGCTGCAACTCCTCA  731

seq1  TATAACATCACTGCAGATGTACCCTGTGTCGACTGTCTATTGCTTCACCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACATCACTGCAGATGTACCCTGTGTCGACTGTCTATTGCTTCACCA  781

seq1  GCGTTTTAGGCAGCCAGAGAGCGTGAAGCCAGCCTGCCCCACACCCTGCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTTTAGGCAGCCAGAGAGCGTGAAGCCAGCCTGCCCCACACCCTGCC  831

seq1  ACAGGCATCAGGCCTCTAGCTAGTTCCAGCCTTTGAACATAGTCAGTGAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCATCAGGCCTCTAGCTAGTTCCAGCCTTTGAACATAGTCAGTGAG  881

seq1  TTTCTCAGACTCCTGGACACTGAGCAGAGACGGACATGTCACTCTTTAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAGACTCCTGGACACTGAGCAGAGACGGACATGTCACTCTTTAAA  931

seq1  CGCGTACTCGCTCTTCGCTGTGTTTTCAGAATCCTTAACGCAGAATTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGTACTCGCTCTTCGCTGTGTTTTCAGAATCCTTAACGCAGAATTC  979