BAC Information

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BAC

Clone NameB6Ng01-140K06
Chromosome5 (Build37)
Map Location 83,187,076 - 83,188,220
singlet/doubletsinglet
Overlap genenone
Upstream geneLphn3, EG433912
Downstream geneLOC100039434, Srd5a2l2, LOC100039608
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140K06.bB6Ng01-140K06.g
ACCDH939314DH939315
length1,2411,125
definitionDH939314|Mus musculus domesticus DNA, BAC clone: B6Ng01-140K06, 5' end.DH939315|Mus musculus domesticus DNA, BAC clone: B6Ng01-140K06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctctttagctctgtttcccattttttaatatggttatttggtt
ctctggagtctacctttatgagttctttgtatattttgaatattagcctt
ctattggatgtaaaaaaaaagaattattatcttttatatattgggagcca
taaaacatgaaatgataatatttcaaaataaattttctctgtcacctatc
tcagtacactgatactttttgattagtatgtgttctcttcaaatagatta
cctccccaaagcatgcagaaaacaaaagcagctttagataaaaaaaaaaa
tgtgttggttgccattttgtcctattgaaagtgtccttttccttacagaa
cctttgcaattttatgagtttataattgtctattgttgatcttagagcat
aagctattggtgttctgttcaggaaatttccccctgtgcccatctgtttg
aggatcttccccattttctcttctactagtttcagtgtatctggttttaa
gtgcagtttctagatccactttgacttgagctttttacaggaagatgaga
atgggtcaatttgcattcttctccatgttgacctccaattgaaccagcac
catttgttgaaaatactgactttcttttagatcaagtgaccgtaggtgcg
tggcttcatttctgagtcttcaattctattacattgatctacctatctgt
tactttaccattaatatgcagtttttatcactattgctctgttgtacagc
ttgaggcctggtatgctgattcccccagaagttcttttattgttgagaat
agtttggctgtcttgggttttttgtttttctattgaatttgagaattgtt
ttttctaactctatgaagaattgagttagaattttgatggggattctact
gaatctatgtattgctttggcagatggctacttttactatgtgattttac
tatgttaggtgtggtccttgatttcctgatctttcccagaattttaacat
gagggatgtgatttgtaatgcttatttagtatctatgaaatgatcctgtg
tttttcttgagttgtttatgtagagggattacattgaagggattactata
ttgaaccctctcgcaattcctgggatggaactactgatggggagtgatca
tccaggtcctggattcaatgcagatattgaattttgaggtaatccaggaa
gggctgaacgatcttcttcgttagcggtctgggagtctggt
gaattctttcagcaatcatggacatgtacctttgaatgtacttatgtgga
tgttttcagaaaggatttaatgaggatggaaggctcgcaatgaatgtagt
cagaaccatgtcatatactgaggtcttaatatggagcggagtgtttttct
gctttcagagtactaatacatgtgagtaacgtaactggaagtcttattct
cctgctatcaagacctttcttccatgatgcaccgtttcttcaaactatga
gcaaaataaatccttccttctttgtgttcctcttataaagtatttaatga
catcatacaaaatataactaaaaaaatgtgcaaaagtatgaggccattgc
tgtgataaaccctgtagttttaggtttggaaaaatgacttacaggtgaaa
ggtaatatatcaaggtgcagaaatcttttgcaaatttagctttcaatcct
tgtttaaatataatatttatacatctacttaaataacttatttttactgg
gctataaaacaagtctaaaatgtttacacacatgctcacatgtatgttct
gataaccataaggaactgaataaaatgaatgcaggttaaacccaatatcc
tgattttcaaagtttagaaaatgtattttgccataatttcacattatatt
atcatagattctttactaaaattgcttgtacagttagctgactttgcccc
ataactctgcagttcatgcagtttaattattttattccaattatatgtgg
atcctttcatcataattagaacatgtaattattgatcagtgtgctttgta
agatacacttcattttcctacttatttgaaggtatttcatgaggcttgat
ttttgtacttaatattaaaaagctttattgaaaaagaaagaaatgtaata
gagtcaggatgaggttagggagaaacatatcatccattctcttgagtaca
ttactgttttgggtatgtaagaatgggcagtatgctatgttcatacaaca
gacattttctcccagggatgacttgataacatgattaggttaggtaatac
attatctggatacatctagcactcatgtagacaacttatcctcctagttc
gggccatattggaccatttattgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_83187076_83188220
seq2: B6Ng01-140K06.g_67_1191 (reverse)

seq1  TCCAATAAAAATGTTACAATATATGCCCCGAACTAGGAAGGATAAGTTGT  50
      ||||||  ||||| | ||  ||||| ||||||||||| ||||||||||||
seq2  TCCAAT--AAATGGTCCA--ATATGGCCCGAACTAGG-AGGATAAGTTGT  45

seq1  GCTACATTGAGTGCTAGATGGTAATCAAGATAAATTGTTATTTACCTAAC  100
       ||||| |||||||||||||   ||| ||||||  |||   |||||||||
seq2  -CTACA-TGAGTGCTAGATG--TATCCAGATAA--TGT--ATTACCTAAC  87

seq1  ATTAATCAATGTTATCATGTCATTCCCTGGGAGAAAATGGTCTGTTTGTA  150
        ||||| ||||||||| |||| ||||||||||||||| ||||| |||||
seq2  -CTAATC-ATGTTATCAAGTCA-TCCCTGGGAGAAAAT-GTCTG-TTGTA  132

seq1  TGAAACATAGCATACTGCCCATTCTTACATAACCCAAAACAGTAATGTAC  200
      || ||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TG-AACATAGCATACTGCCCATTCTTACAT-ACCCAAAACAGTAATGTAC  180

seq1  TCAAGAGAATGGATGATATGTTTCTCCCTAACCTTCATCCTGACTCTA-T  249
      ||||||||||||||||||||||||||||||||| |||||||||||||| |
seq2  TCAAGAGAATGGATGATATGTTTCTCCCTAACC-TCATCCTGACTCTATT  229

seq1  ACATTTTCTTTC-TTTTCAATAAAGCTTTTTAATATTAAGTACAAAAATC  298
      ||| |||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACA-TTTCTTTCTTTTTCAATAAAGCTTTTTAATATTAAGTACAAAAATC  278

seq1  AAGCCTCATGAAATACCTTCAAATAAGTAGGAAAATGAAGTGTATCTTAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTCATGAAATACCTTCAAATAAGTAGGAAAATGAAGTGTATCTTAC  328

seq1  AAAGCACACTGATCAATAATTACATGTTCTAATTATGATGAAAGGATCCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACACTGATCAATAATTACATGTTCTAATTATGATGAAAGGATCCA  378

seq1  CATATAATTGGAATAAAATAATTAAACTGCATGAACTGCAGAGTTATGGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAATTGGAATAAAATAATTAAACTGCATGAACTGCAGAGTTATGGG  428

seq1  GCAAAGTCAGCTAACTGTACAAGCAATTTTAGTAAAGAATCTATGATAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTCAGCTAACTGTACAAGCAATTTTAGTAAAGAATCTATGATAAT  478

seq1  ATAATGTGAAATTATGGCAAAATACATTTTCTAAACTTTGAAAATCAGGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTGAAATTATGGCAAAATACATTTTCTAAACTTTGAAAATCAGGA  528

seq1  TATTGGGTTTAACCTGCATTCATTTTATTCAGTTCCTTATGGTTATCAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGGTTTAACCTGCATTCATTTTATTCAGTTCCTTATGGTTATCAGA  578

seq1  ACATACATGTGAGCATGTGTGTAAACATTTTAGACTTGTTTTATAGCCCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATGTGAGCATGTGTGTAAACATTTTAGACTTGTTTTATAGCCCA  628

seq1  GTAAAAATAAGTTATTTAAGTAGATGTATAAATATTATATTTAAACAAGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAATAAGTTATTTAAGTAGATGTATAAATATTATATTTAAACAAGG  678

seq1  ATTGAAAGCTAAATTTGCAAAAGATTTCTGCACCTTGATATATTACCTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAGCTAAATTTGCAAAAGATTTCTGCACCTTGATATATTACCTTT  728

seq1  CACCTGTAAGTCATTTTTCCAAACCTAAAACTACAGGGTTTATCACAGCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTAAGTCATTTTTCCAAACCTAAAACTACAGGGTTTATCACAGCA  778

seq1  ATGGCCTCATACTTTTGCACATTTTTTTAGTTATATTTTGTATGATGTCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTCATACTTTTGCACATTTTTTTAGTTATATTTTGTATGATGTCA  828

seq1  TTAAATACTTTATAAGAGGAACACAAAGAAGGAAGGATTTATTTTGCTCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATACTTTATAAGAGGAACACAAAGAAGGAAGGATTTATTTTGCTCA  878

seq1  TAGTTTGAAGAAACGGTGCATCATGGAAGAAAGGTCTTGATAGCAGGAGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGAAGAAACGGTGCATCATGGAAGAAAGGTCTTGATAGCAGGAGA  928

seq1  ATAAGACTTCCAGTTACGTTACTCACATGTATTAGTACTCTGAAAGCAGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACTTCCAGTTACGTTACTCACATGTATTAGTACTCTGAAAGCAGA  978

seq1  AAAACACTCCGCTCCATATTAAGACCTCAGTATATGACATGGTTCTGACT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACTCCGCTCCATATTAAGACCTCAGTATATGACATGGTTCTGACT  1028

seq1  ACATTCATTGCGAGCCTTCCATCCTCATTAAATCCTTTCTGAAAACATCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCATTGCGAGCCTTCCATCCTCATTAAATCCTTTCTGAAAACATCC  1078

seq1  ACATAAGTACATTCAAAGGTACATGTCCATGATTGCTGAAAGAATTC  1145
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGTACATTCAAAGGTACATGTCCATGATTGCTGAAAGAATTC  1125