BAC Information

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BAC

Clone NameB6Ng01-141A06
Chromosome5 (Build37)
Map Location 143,638,140 - 143,813,014
singlet/doubletdoublet
Overlap geneFbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809
Upstream geneSdk1, LOC666727, Foxk1, C330006K01Rik, D930005D10Rik, Papolb, Mmd2, Wipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788
Downstream geneOlfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141A06.bB6Ng01-141A06.g
ACCDH939593DH939594
length1,010894
definitionDH939593|Mus musculus domesticus DNA, BAC clone: B6Ng01-141A06, 5' end.DH939594|Mus musculus domesticus DNA, BAC clone: B6Ng01-141A06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,812,001 - 143,813,014)(143,638,140 - 143,639,034)
sequence
gaattcagtagctaaaggatggcttgagacaagagtgtccaccttcttgg
catgtacatatgttagtagagatttaaaaaaaaatcaattgggggtggtg
gtggctagagagatgtctcagcggttctgaggtcctgagttcaattccca
gcacccacatggtggctcacaaccatctgtaatgggacctgatgccctct
tctggtgtgtctgaagacagctacagtgtattcatcatacataaaataaa
taaataaatctttaaaaaagggggattcagtttggctgaccatctctccc
cttgttcttcctagaatgaaatgaaggatagctccctcctccttttttct
ttgtggctcataagtacttgagtgtgtgatacagtatgcagtgagttcac
ttcagcgtcatttactgttaaatcacacttgtattatatatttttccctc
aggcaactaataattaaaagaagagtaaacattgctggaagtgctttcaa
cttcacccagtctgtgcttctaaaaacaaaaggcctgttgtccccaccag
ccagctatagtgtctgtgatgtcagtgggagtgtgctgtgctaagccatg
ctctcatcttcaggttggctcctttcctctaggaaacaggaaggtgtatt
gactgtgacaggcgttactgctgtgttggtacagaattctaagccattct
tcatgatcggcgcaaatcctcaaacccttagcaaaatggcttccagttag
atgcagctcagtacttgcctagcatggatgggaatcctgggtttctggtt
tacagcactgaataagctgggtataatgacacatgcttataatctagcgt
tctcagcgaggtttaggacagctgagctgcacagagaagcctggttgggg
aaaggggtcttaatctttcagtacttttactttcacatctttgaaaatgc
aatagaagtcttttatccttttcttgatggagctactttctggtgggtgg
ataggcggtg
gaattcagacctcatatgaggccaaagaagcccaaataggggaaggactt
gcagaagaacacagccccacatccagtgggctgcatggtgcaacaggaga
gaaaaggagctggcatggggacacacgcagctcatcctggtactggggag
ggttgagatgtcaatgcccagaatggcaccaagaagcaggaaaccccaag
gctgagacgtggctcagccagcagactatttgcctgacgcttccgggccc
cagcatggcataaatctaacgtggcagtgtatgcctgtaacgacaagacc
tgagaagtagcgagcgggcatcagaaggttacgtttattctgattattct
tctccgtgttagtggctagtctgggctacttgagactcaaaagagagaga
cagacagacaggcagacacaggacacaaaacctgaaggacaaatgtagtc
accacactgtgcaggcattagacacaggcaacctaaatacagatacatcc
tgtgaggtgggagaagccaaatccaaccccacaacatgaagcccccgagc
cagttaaggaaggtgagaaagatgcaactcaactgcccagggacctgagg
cacgagtacagcctggcacggggacagacacgaagcataatcctgccagg
aaccgacagtgcagtgcagggaggaaagggaccccagtcttgctggctga
gagctccatctaccctgctgggtgaggtgctaggaggattgtggctgagg
caggaggattgtcacaaatttaaggccagtctgggctactccaaagtgct
ctatacctatatcttcagcactcaggagatggaggcgggaggatactgaa
gtggaaggtcgtgtctgcttactatgggctcaatggcagcctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_143812001_143813014
seq2: B6Ng01-141A06.b_49_1058 (reverse)

seq1  CACCGCCTATCCACCCACCCAGAAAGTAGCT-CATCAAGAAAAGGGATAA  49
      ||||||||||||||||| ||||||||||||| ||||||||||| ||||||
seq2  CACCGCCTATCCACCCA-CCAGAAAGTAGCTCCATCAAGAAAA-GGATAA  48

seq1  AAGAC-TCTATTTGCATTTTCAAGGATGTGAAAGTGAAAGTACTGAAAGA  98
      ||||| |||| |||||||||||| ||||||||||| ||||||||||||||
seq2  AAGACTTCTA-TTGCATTTTCAAAGATGTGAAAGTAAAAGTACTGAAAGA  97

seq1  ATTAGGAACCCCTTTCCCCAACCAGGCTTTCTCTGTGCAGCTCAGCTGTC  148
       | ||  |||||||||||||||||||| ||||||||||||||||||||||
seq2  TTAAG--ACCCCTTTCCCCAACCAGGC-TTCTCTGTGCAGCTCAGCTGTC  144

seq1  CTAAACCTCGCTGGGAACGCTAAGATTATAAGCATGTGTCATAATACCCA  198
      ||||||||||||| ||||||| |||||||||||||||||||| |||||||
seq2  CTAAACCTCGCTGAGAACGCT-AGATTATAAGCATGTGTCATTATACCCA  193

seq1  GCTTATTCAGTGCTGTAAACCAGAAACCCAGGATT-CCATCCATGCTAGG  247
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GCTTATTCAGTGCTGTAAACCAGAAACCCAGGATTCCCATCCATGCTAGG  243

seq1  CAAGTACTGAGCTGCATCTAACTGGAAGCCATTTTGCTAAGGGTTTGAGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTACTGAGCTGCATCTAACTGGAAGCCATTTTGCTAAGGGTTTGAGG  293

seq1  ATTTGCGCCGATCATGAAGAATGGCTTAGAATTCTGTACCAACACAGCAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCGCCGATCATGAAGAATGGCTTAGAATTCTGTACCAACACAGCAG  343

seq1  TAACGCCTGTCACAGTCAATACACCTTCCTGTTTCCTAGAGGAAAGGAGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGCCTGTCACAGTCAATACACCTTCCTGTTTCCTAGAGGAAAGGAGC  393

seq1  CAACCTGAAGATGAGAGCATGGCTTAGCACAGCACACTCCCACTGACATC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGAAGATGAGAGCATGGCTTAGCACAGCACACTCCCACTGACATC  443

seq1  ACAGACACTATAGCTGGCTGGTGGGGACAACAGGCCTTTTGTTTTTAGAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACACTATAGCTGGCTGGTGGGGACAACAGGCCTTTTGTTTTTAGAA  493

seq1  GCACAGACTGGGTGAAGTTGAAAGCACTTCCAGCAATGTTTACTCTTCTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGACTGGGTGAAGTTGAAAGCACTTCCAGCAATGTTTACTCTTCTT  543

seq1  TTAATTATTAGTTGCCTGAGGGAAAAATATATAATACAAGTGTGATTTAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTATTAGTTGCCTGAGGGAAAAATATATAATACAAGTGTGATTTAA  593

seq1  CAGTAAATGACGCTGAAGTGAACTCACTGCATACTGTATCACACACTCAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAATGACGCTGAAGTGAACTCACTGCATACTGTATCACACACTCAA  643

seq1  GTACTTATGAGCCACAAAGAAAAAAGGAGGAGGGAGCTATCCTTCATTTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTATGAGCCACAAAGAAAAAAGGAGGAGGGAGCTATCCTTCATTTC  693

seq1  ATTCTAGGAAGAACAAGGGGAGAGATGGTCAGCCAAACTGAATCCCCCTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGGAAGAACAAGGGGAGAGATGGTCAGCCAAACTGAATCCCCCTT  743

seq1  TTTTAAAGATTTATTTATTTATTTTATGTATGATGAATACACTGTAGCTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGATTTATTTATTTATTTTATGTATGATGAATACACTGTAGCTG  793

seq1  TCTTCAGACACACCAGAAGAGGGCATCAGGTCCCATTACAGATGGTTGTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGACACACCAGAAGAGGGCATCAGGTCCCATTACAGATGGTTGTG  843

seq1  AGCCACCATGTGGGTGCTGGGAATTGAACTCAGGACCTCAGAACCGCTGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCATGTGGGTGCTGGGAATTGAACTCAGGACCTCAGAACCGCTGA  893

seq1  GACATCTCTCTAGCCACCACCACCCCCAATTGATTTTTTTTTAAATCTCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCTCTCTAGCCACCACCACCCCCAATTGATTTTTTTTTAAATCTCT  943

seq1  ACTAACATATGTACATGCCAAGAAGGTGGACACTCTTGTCTCAAGCCATC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACATATGTACATGCCAAGAAGGTGGACACTCTTGTCTCAAGCCATC  993

seq1  CTTTAGCTACTGAATTC  1014
      |||||||||||||||||
seq2  CTTTAGCTACTGAATTC  1010

seq1: chr5_143638140_143639034
seq2: B6Ng01-141A06.g_71_964

seq1  GAATTCAGACCTCATATGAGGCCAAAGAAGCCCAAATAGGGGAAGGACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACCTCATATGAGGCCAAAGAAGCCCAAATAGGGGAAGGACTT  50

seq1  GCAGAAGAACACAGCCCCACATCCAGTGGGCTGCATGGTGCAACAGGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGAACACAGCCCCACATCCAGTGGGCTGCATGGTGCAACAGGAGA  100

seq1  GAAAAGGAGCTGGCATGGGGACACACGCAGCTCATCCTGGTACTGGGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGAGCTGGCATGGGGACACACGCAGCTCATCCTGGTACTGGGGAG  150

seq1  GGTTGAGATGTCAATGCCCAGAATGGCACCAAGAAGCAGGAAACCCCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAGATGTCAATGCCCAGAATGGCACCAAGAAGCAGGAAACCCCAAG  200

seq1  GCTGAGACGTGGCTCAGCCAGCAGACTATTTGCCTGACGCTTCCGGGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGACGTGGCTCAGCCAGCAGACTATTTGCCTGACGCTTCCGGGCCC  250

seq1  CAGCATGGCATAAATCTAACGTGGCAGTGTATGCCTGTAACGACAAGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGGCATAAATCTAACGTGGCAGTGTATGCCTGTAACGACAAGACC  300

seq1  TGAGAAGTAGCGAGCGGGCATCAGAAGGTTACGTTTATTCTGATTATTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGTAGCGAGCGGGCATCAGAAGGTTACGTTTATTCTGATTATTCT  350

seq1  TCTCCGTGTTAGTGGCTAGTCTGGGCTACTTGAGACTCAAAAGAGAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCGTGTTAGTGGCTAGTCTGGGCTACTTGAGACTCAAAAGAGAGAGA  400

seq1  CAGACAGACAGGCAGACACAGGACACAAAACCTGAAGGACAAATGTAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGACAGGCAGACACAGGACACAAAACCTGAAGGACAAATGTAGTC  450

seq1  ACCACACTGTGCAGGCATTAGACACAGGCAACCTAAATACAGATACATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACTGTGCAGGCATTAGACACAGGCAACCTAAATACAGATACATCC  500

seq1  TGTGAGGTGGGAGAAGCCAAATCCAACCCCACAACATGAAGCCCCCGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGTGGGAGAAGCCAAATCCAACCCCACAACATGAAGCCCCCGAGC  550

seq1  CAGTTAAGGAAGGTGAGAAAGATGCAACTCAACTGCCCAGGGACCTGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAAGGAAGGTGAGAAAGATGCAACTCAACTGCCCAGGGACCTGAGG  600

seq1  CACGAGTACAGCCTGGCACGGGGACAGACACGAAGCATAATCCTGCCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGTACAGCCTGGCACGGGGACAGACACGAAGCATAATCCTGCCAGG  650

seq1  AACCGACAGTGCAGTGCAGGGAGG-AAGGGACCCCAGTCTTGCTGGCTGA  699
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AACCGACAGTGCAGTGCAGGGAGGAAAGGGACCCCAGTCTTGCTGGCTGA  700

seq1  GAGCTCCATCTACCCTGCTGGGTGAGGTGCTAGGAGGATTGTGGCTGAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCATCTACCCTGCTGGGTGAGGTGCTAGGAGGATTGTGGCTGAGG  750

seq1  CAGGAGGATTGCCACAAATTTAAGGCCAGCCTGGGCTACTCCAAAAGTGC  799
      ||||||||||| ||||||||||||||||| |||||||||||| |||||||
seq2  CAGGAGGATTGTCACAAATTTAAGGCCAGTCTGGGCTACTCC-AAAGTGC  799

seq1  TCTATACCTATAACTTCAGCACTCAGGAGATGGAGGCGGGAGGATAC-GG  848
      |||||||||||| |||||||||||||||||||||||||||||||||| | 
seq2  TCTATACCTATATCTTCAGCACTCAGGAGATGGAGGCGGGAGGATACTGA  849

seq1  AGGGGAAGGTCGTGTCCAGCATCACAGTGGGCTCAAGGGCAGCCTGA  895
      || |||||||||||| | || | ||  ||||||||| ||||||||||
seq2  AGTGGAAGGTCGTGT-CTGC-TTACTATGGGCTCAATGGCAGCCTGA  894