BAC Information

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BAC

Clone NameB6Ng01-141A17
Chromosome5 (Build37)
Map Location 10,237,744 - 10,238,538
singlet/doubletsinglet
Overlap geneLOC100041395
Upstream geneLOC654361, 9330182L06Rik, Grm3, LOC100042768, LOC625446, LOC435832
Downstream geneLOC381612, EG625586, LOC242809, LOC623849, LOC100041408, LOC667880, EG667888, EG667901, EG667907, LOC667916, LOC100041472, EG545728, LOC100042819, LOC667942
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141A17.bB6Ng01-141A17.g
ACCDH939612DH939613
length8401,018
definitionDH939612|Mus musculus domesticus DNA, BAC clone: B6Ng01-141A17, 5' end.DH939613|Mus musculus domesticus DNA, BAC clone: B6Ng01-141A17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcactaaaagcatgtggccctggctttgttttttttttttttg
gggggggggcagtgaatgacttttgatgactttttcttttctcttaggga
atatagaatcatttagttacttttctagatctagcttaacctttggtaat
tggtgtctatctagaatttcaacaatttcatattgatttcttttcagtat
tttagagtataggcttttgaagccagacctaatgattttttgaagttcct
cagtgttcattgttatgtccctcttttcatttctgattttggtaatttgg
gtattgtctctttgccttttagttcatttgggaaaggggttgtctatctt
gttgattttctcaaagagccagctcttggattccttgactcttttaaata
tcctctttgtttctcattgattgatttgatttctgttttatttcctgcca
tccagtcctaccaaactctcaatgggatgagactttgcctcaccttggga
actgaagcatgtaataaacaaagctcttgctgttctctgtggtgggtgat
gcacatgacagcctcactgcaaaccctgcatagccaggtttaagggtgta
ttgaattagcccactttgtcagtgttacctgcaaggtgccatgacacatt
aaacaaagtcagtacacacctccactatatttttcacttcggtctttcca
gtcatattggaaaatattataatgcgttcatgaatgcacacacacacacc
acacacacacacacacacacacatacacacaccacagagaaagagagaga
gagagagagagagagagagagagagagagagagagagaga
gaattcacatgtttattttccatgtgcttggaaaacagttttcttgattt
tatctacaaccttggcctttctaagctttctggcccacttctagataatt
tgctgggcctaaatatgacacataaatgtctgatttacagctgagtacta
gacagcttgttttattcttcctgctgaaatgctcgaggctctgtattaac
tactacctactacaacaaatagaggcttttctttagaggtcggagagact
ctgatctacgggtacaggagaaagtcactgggagtggttttaatactata
tctattaaacaaaataatagtacttcattctccactagaaactttgactt
acctagccacaaattttgttgtacttaatatttctaaggttaggtttgat
ctcatggaacaggccattaatccaaacatttgtttgggtactccagtgaa
atgtatgttaccattcaaagtgtgggcctaatttgtcaatccagtcattg
tggctttaagagctcacatctgggtgaggttgaggctaacagttctcctc
taacagcctgcatagcactgaagacagtagagttgaagcttgaagttgag
taccagattaatgtctacaggttctatgattcaaatatgtgatgttttag
cgttagggtcctagtgtcaatttccagagggtagccactacttggaatat
tctctaatttgagggagggggatgtctttatgaacctatttacttacatt
tcaccaagaggtgacccattcctgcaactggtattaatctggtagcaggg
gaaattacttttaatatggcctccccataaatctttgcatgtatagaagg
atatattttatgaaattcttatagtagcagagttccatgtggcttttcca
aagaccatgagtgttattattccttcgaatattcctgtttactctgtgat
gtgtttaaaaaaagttaagtaaagaggatatgttctattgggggttgtag
tcaggtatgggggaaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_10237744_10238538
seq2: B6Ng01-141A17.b_44_851

seq1  GAATTCTGCACTAAAACCACGTGGCCCTGGC-----------TTATTTTG  39
      ||||||| |||||||| || |||||||||||           || |||||
seq2  GAATTCTTCACTAAAAGCATGTGGCCCTGGCTTTGTTTTTTTTTTTTTTG  50

seq1  GGGGGGGGGCAGTGAATGACTTTTGATGACTTTTTCTTTTCTCTTAGGGA  89
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGGCAGTGAATGACTTTTGATGACTTTTTCTTTTCTCTTAGGGA  100

seq1  ATATAGAATCATTTAGTTACTTTACTAGATCTAGATTAAACTTTGGTAAT  139
      ||||||||||||||||||||||| |||||||||| |||| ||||||||||
seq2  ATATAGAATCATTTAGTTACTTTTCTAGATCTAGCTTAACCTTTGGTAAT  150

seq1  TGGTATCTATCTAGAATTTCAACAATTTCATATTGATTTTTTTTTTCAGT  189
      |||| |||||||||||||||||||||||||||||||  ||| ||||||||
seq2  TGGTGTCTATCTAGAATTTCAACAATTTCATATTGA--TTTCTTTTCAGT  198

seq1  ATTTTAGAGTATAGGCTTTTGAAGCCAGACCTAATGATTTTTTGAAGTTC  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGAGTATAGGCTTTTGAAGCCAGACCTAATGATTTTTTGAAGTTC  248

seq1  CTCAGTGTTCATTGTTATGTCCCTCTTTTCATTTCTGATTTTGGTAATTT  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGTTCATTGTTATGTCCCTCTTTTCATTTCTGATTTTGGTAATTT  298

seq1  GGGTATTGTCTCTTTGCCTTTTAGTTCATTTGGGTAAGGGGTTGTCTATC  339
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGGTATTGTCTCTTTGCCTTTTAGTTCATTTGGGAAAGGGGTTGTCTATC  348

seq1  TTGTTGATTTTCTCAAAGAGCCAGCTCTTGGATTCCTTGACTCTTTTAAT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTGTTGATTTTCTCAAAGAGCCAGCTCTTGGATTCCTTGACTCTTTTAAA  398

seq1  TATCCTCTTTGTTTCTCATTGATTGATTTGATTTCTGTTTTATTTCCTGC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTCTTTGTTTCTCATTGATTGATTTGATTTCTGTTTTATTTCCTGC  448

seq1  CATCCAGTCCTACCAAACTCTCAATGGGATGAGGCTTTGTCTCACCTTGC  489
      ||||||||||||||||||||||||||||||||| ||||| ||||||||| 
seq2  CATCCAGTCCTACCAAACTCTCAATGGGATGAGACTTTGCCTCACCTTGG  498

seq1  GAACTGAAGCATGTAATAAACAAAGCTCTTGCTGTTCTCTGTGGTGGGTG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAAGCATGTAATAAACAAAGCTCTTGCTGTTCTCTGTGGTGGGTG  548

seq1  ATGCACATGACAGCCTCACTGCAAACCCTGCATATCCAGGTTTAAGGGTG  589
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATGCACATGACAGCCTCACTGCAAACCCTGCATAGCCAGGTTTAAGGGTG  598

seq1  TATTGAATTAGCCCACTTTGTCAGTGTTACCTGCAAGGTGCCATGACACA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAATTAGCCCACTTTGTCAGTGTTACCTGCAAGGTGCCATGACACA  648

seq1  TTAACCAAAGTCAGTATACACCTCCACTATATTTTTCACTTCGGTCTTTC  689
      |||| ||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTAAACAAAGTCAGTACACACCTCCACTATATTTTTCACTTCGGTCTTTC  698

seq1  CAGTCATATTGGAAAATATTATAATGGGTTCATGAATGCACACACACA--  737
      |||||||||||||||||||||||||| |||||||||||||||||||||  
seq2  CAGTCATATTGGAAAATATTATAATGCGTTCATGAATGCACACACACACA  748

seq1  -CACACACACACACACACAGAGAGAGAGAGAGA-GAGAGAGAAAGAGAGA  785
       |||||||||||||||||| | | | | | | |  | |||||||||||||
seq2  CCACACACACACACACACACACACATACACACACCACAGAGAAAGAGAGA  798

seq1  GAGAGAGAGA  795
      ||||||||||
seq2  GAGAGAGAGA  808