BAC Information

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BAC

Clone NameB6Ng01-141F23
Chromosome5 (Build37)
Map Location 24,807,382 - 24,918,767
singlet/doubletdoublet
Overlap geneMll3
Upstream geneKcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik, Nub1, 2810046M22Rik, Crygn, Rheb, Prkag2, Galntl5, E130116L18Rik, Galnt11
Downstream geneGm443, Xrcc2, LOC435835, Actr3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141F23.bB6Ng01-141F23.g
ACCDH939847DH939848
length1,096957
definitionDH939847|Mus musculus domesticus DNA, BAC clone: B6Ng01-141F23, 5' end.DH939848|Mus musculus domesticus DNA, BAC clone: B6Ng01-141F23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,807,382 - 24,808,482)(24,918,151 - 24,918,767)
sequence
gaattcactgtgatacatatgctggtaattatactcgtgaacctcagcct
tttctcatagctaggataacaatgaggtgcccctgttcccagcctatctt
agttttggatgacactggataaagctactataaacattcatgaataagca
tttataagagctctaaggcaataattcatttagggaaataactataattg
agttctgaactcatcttgcacagttcattttaaactctttttttacagtg
actttaaagctttataactttttggccttcgtggattcatattttggaaa
taagccccctttcaaggtattccaagtttctttcctccctcttttctttt
gtgaaactattctgaaggcactcagagggaacttggtctctcagccatgc
taggcaagcactgtgccactgaactacagatcttaccttcatttcagtgg
tgattcttaagagcaaagtaagaaataaacatagaaatatgctataacaa
agactgacagagtgattcaaatgctataactgaactttcattaaaaatta
gagaccaaaggatgaaggaaagataaaacatggaggtaaccaaatacttg
ccagatctgattcttgtttcaacactatctctgtgagtcttatcttcaag
aaagccttagtttagcaaatgatgtgagagcatgtgtactgcaatgattt
aattttttcttttgttcttaacaagcaaattaacaaacaaaacaaaaaac
ccaaaataaaaaaagacagggtctaactgtgtatctctagctatcctaga
actcactgtttagacatggattgcctgaaactcatagaggtctctgcctc
ctaagtgctaaagtgggtgcagtgttttactagtagtaaggagacaatcc
atcattccagggtcacagagagtatataaaacagttctgacccggagttg
tgagagtcagtctcttcagtgcagcaagcatcactcagtcaggaataggc
agccactccctcagtataagaaggtctttctagagatgtaatttgcatgc
tattaatagcagaaactcaaccctgaagcccactaatatcagctct
gaattctttaactctagtgtgaacctaggtgaagagtatccagtatttgt
tttatccttagttcactttccaccaatattttgagaggtttaaatatttt
caaaataaaagtactttgtcaggcagtggtaccctatgccttaaatcaca
ggcagaggcagaggcaggtagagttcttgagattgaggccaacttggtcc
acagagcaaattctaggacagaagggcctacccaaagagatcctgtcttg
aattaaaaaaatagtattatgttttactaattttagatctcattatgaag
tctaatcaattttgagttgaattttgcatggggtattagacaagggtttt
atttctctatatatggttctccagttttcctaacactaatcattgaaaac
tacctgtttctttattgtgtactcttgccatttctggcaaacatagactg
ttagtaaatgtgtggctttatttcctagattcctatcttgttccattggt
gacatagttttataatctctttgtgatgtgctttgaagtaagaggatccg
atttagctttattttcttctctctactttgtcatcttgcttcaggatctt
gttagaccatgccagcttagtacttgtaactctccagcttcaatttgctg
agggctaggattataggcgtgtgtactgtatttgctttttaacttagttt
tttagattaagattttttttctttacatgtatgtagttccaactctataa
atctatttactcatctaaatttacataagctatttatttattggcttttg
tgatggagattatttttctgatttttcaactggcttattagcatacagaa
tgcaggtttttgtatgttgattttgtgtcctgtaacttgacatagacaat
tttcagttctaacagttttgggtagagccttcaagagttttgaatatgca
tattaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_24807382_24808482
seq2: B6Ng01-141F23.b_45_1140

seq1  GAATTCACTGTGATACATATGCTGGTAATTATACTCGTGAACCTCAGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTGATACATATGCTGGTAATTATACTCGTGAACCTCAGCCT  50

seq1  TTTCTCATAGCTAGGATAACAATGAGGTGCCCCTGTTCCCAGCCTATCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCATAGCTAGGATAACAATGAGGTGCCCCTGTTCCCAGCCTATCTT  100

seq1  AGTTTTGGATGACACTGGATAAAGCTACTATAAACATTCATGAATAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGGATGACACTGGATAAAGCTACTATAAACATTCATGAATAAGCA  150

seq1  TTTATAAGAGCTCTAAGGCAATAATTCATTTAGGGAAATAACTATAATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAGAGCTCTAAGGCAATAATTCATTTAGGGAAATAACTATAATTG  200

seq1  AGTTCTGAACTCATCTTGCACAGTTCATTTTAAACTCTTTTTTTACAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGAACTCATCTTGCACAGTTCATTTTAAACTCTTTTTTTACAGTG  250

seq1  ACTTTAAAGCTTTATAACTTTTTGGCCTTCGTGGATTCATATTTTGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAAGCTTTATAACTTTTTGGCCTTCGTGGATTCATATTTTGGAAA  300

seq1  TAAGCCCCCTTTCAAGGTATTCCAAGTTTCTTTCCTCCCTCTTTTCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCCCCTTTCAAGGTATTCCAAGTTTCTTTCCTCCCTCTTTTCTTTT  350

seq1  GTGAAACTATTCTGAAGGCACTCAGAGGGAACTTGGTCTCTCAGCCATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAACTATTCTGAAGGCACTCAGAGGGAACTTGGTCTCTCAGCCATGC  400

seq1  TAGGCAAGCACTGTGCCACTGAACTACAGATCTTACCTTCATTTCAGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAAGCACTGTGCCACTGAACTACAGATCTTACCTTCATTTCAGTGG  450

seq1  TGATTCTTAAGAGCAAAGTAAGAAATAAACATAGAAATATGCTATAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTTAAGAGCAAAGTAAGAAATAAACATAGAAATATGCTATAACAA  500

seq1  AGACTGACAGAGTGATTCAAATGCTATAACTGAACTTTCATTAAAAATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGACAGAGTGATTCAAATGCTATAACTGAACTTTCATTAAAAATTA  550

seq1  GAGACCAAAGGATGAAGGAAAGATAAAACATGGAGGTAACCAAATACTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCAAAGGATGAAGGAAAGATAAAACATGGAGGTAACCAAATACTTG  600

seq1  CCAGATCTGATTCTTGTTTCAACACTATCTCTGTGAGTCTTATCTTCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATCTGATTCTTGTTTCAACACTATCTCTGTGAGTCTTATCTTCAAG  650

seq1  AAAGCCTTAGTTTAGCAAATGATGTGAGAGCATGTGTACTGCAATGATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTTAGTTTAGCAAATGATGTGAGAGCATGTGTACTGCAATGATTT  700

seq1  AATTTTTTCTTTTGTTCTTAACAAGCAAATTAACAAACAAAACAAAAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTCTTTTGTTCTTAACAAGCAAATTAACAAACAAAACAAAAAAC  750

seq1  CCAAAATAAAAAAAGACAGGGTCTAACTGTGTATCTCTAGCTATCCTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATAAAAAAAGACAGGGTCTAACTGTGTATCTCTAGCTATCCTAGA  800

seq1  ACTCACTGTTTAGACATGGATTGCCTGAAACTCATAGAGGTCTCTGCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTGTTTAGACATGGATTGCCTGAAACTCATAGAGGTCTCTGCCTC  850

seq1  CTAAGTGCTAAGGT-GGTGCAGTGTTTTACTAGTAGTAAGGAGACAATCC  899
      ||||||||||| || |||||||||||||||||||||||||||||||||||
seq2  CTAAGTGCTAAAGTGGGTGCAGTGTTTTACTAGTAGTAAGGAGACAATCC  900

seq1  AATCATTCCAGGGTCACAGAGAGTATATAAAACAGTTCTGACCCGGAGTT  949
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -ATCATTCCAGGGTCACAGAGAGTATATAAAACAGTTCTGACCCGGAGTT  949

seq1  GTGAGAGTCAGTCTCTTCAGTGGCAGCAAGCATCACTCAGTCAGGAATAG  999
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTGAGAGTCAGTCTCTTCAGT-GCAGCAAGCATCACTCAGTCAGGAATAG  998

seq1  GCAGCCACTCCCTCAGTTATTAAGAGGTCTTCCTAGAGGAGTGTAATTTG  1049
      |||||||||||||||| ||| |  ||||||| ||||||   |||||||||
seq2  GCAGCCACTCCCTCAG-TATAAGAAGGTCTTTCTAGAG--ATGTAATTTG  1045

seq1  CATGCTATTTAATAGCAGAAACCCAAACCCTGAGGCCCACTAATA-CAGC  1098
      ||||||| |||||||||||||| | |||||||| ||||||||||| ||||
seq2  CATGCTA-TTAATAGCAGAAACTC-AACCCTGAAGCCCACTAATATCAGC  1093

seq1  TCT  1101
      |||
seq2  TCT  1096

seq1: chr5_24918151_24918767
seq2: B6Ng01-141F23.g_68_684 (reverse)

seq1  AGCTGGCATGGTCTAACAAGATCCTGAAGCAAGATGACAAAGTAGAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCATGGTCTAACAAGATCCTGAAGCAAGATGACAAAGTAGAGAGA  50

seq1  AGAAAATAAAGCTAAATCGGATCCTCTTACTTCAAAGCACATCACAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATAAAGCTAAATCGGATCCTCTTACTTCAAAGCACATCACAAAGA  100

seq1  GATTATAAAACTATGTCACCAATGGAACAAGATAGGAATCTAGGAAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATAAAACTATGTCACCAATGGAACAAGATAGGAATCTAGGAAATAA  150

seq1  AGCCACACATTTACTAACAGTCTATGTTTGCCAGAAATGGCAAGAGTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACACATTTACTAACAGTCTATGTTTGCCAGAAATGGCAAGAGTACA  200

seq1  CAATAAAGAAACAGGTAGTTTTCAATGATTAGTGTTAGGAAAACTGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAGAAACAGGTAGTTTTCAATGATTAGTGTTAGGAAAACTGGAGA  250

seq1  ACCATATATAGAGAAATAAAACCCTTGTCTAATACCCCATGCAAAATTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATATAGAGAAATAAAACCCTTGTCTAATACCCCATGCAAAATTCA  300

seq1  ACTCAAAATTGATTAGACTTCATAATGAGATCTAAAATTAGTAAAACATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAAATTGATTAGACTTCATAATGAGATCTAAAATTAGTAAAACATA  350

seq1  ATACTATTTTTTTAATTCAAGACAGGATCTCTTTGGGTAGGCCCTTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATTTTTTTAATTCAAGACAGGATCTCTTTGGGTAGGCCCTTCTGT  400

seq1  CCTAGAATTTGCTCTGTGGACCAAGTTGGCCTCAATCTCAAGAACTCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAATTTGCTCTGTGGACCAAGTTGGCCTCAATCTCAAGAACTCTAC  450

seq1  CTGCCTCTGCCTCTGCCTGTGATTTAAGGCATAGGGTACCACTGCCTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTGCCTCTGCCTGTGATTTAAGGCATAGGGTACCACTGCCTGAC  500

seq1  AAAGTACTTTTATTTTGAAAATATTTAAACCTCTCAAAATATTGGTGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACTTTTATTTTGAAAATATTTAAACCTCTCAAAATATTGGTGGAA  550

seq1  AGTGAACTAAGGATAAAACAAATACTGGATACTCTTCACCTAGGTTCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAACTAAGGATAAAACAAATACTGGATACTCTTCACCTAGGTTCACA  600

seq1  CTAGAGTTAAAGAATTC  617
      |||||||||||||||||
seq2  CTAGAGTTAAAGAATTC  617