BAC Information

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BAC

Clone NameB6Ng01-141H05
Chromosome5 (Build37)
Map Location 30,789,714 - 30,898,895
singlet/doubletdoublet
Overlap gene1700041E20Rik, Kcnk3
Upstream geneHlxb9, LOC619355, Ube3c, LOC100039363, EG332993, Dnajb6, EG433865, LOC100039405, LOC100034662, LOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik
Downstream gene4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141H05.bB6Ng01-141H05.g
ACCDH939906DH939907
length417399
definitionDH939906|Mus musculus domesticus DNA, BAC clone: B6Ng01-141H05, 5' end.DH939907|Mus musculus domesticus DNA, BAC clone: B6Ng01-141H05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,898,474 - 30,898,895)(30,789,714 - 30,790,118)
sequence
aaggctattctgggtaatttgcgtcaccctgtttcaaaaccaaatatagg
gcccgggaccttgtgcctcagcagagcactcgccttgcatgcatgaggcc
ctacatgcaatccctgggttgagcaggcatcgggaggtcaacaaaaaacc
aggaagcaggaagccggctgtttcttaccaaatgaccagtctttgggtat
cttggtctgggatttctctgacatcaaaactgtgagaaataaaagtgttg
ggcagccacactggtctgcgccatttttgtctgacaagtctggcacagat
caagacaggcagaggccaggtaggaggagccaccttctcactggcattta
gttctccagagatctcaggagtttgtgcacatgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtg
cataggaagagagagatagcctttggtcctggggagactagagaaccttc
actccctccaaccttggtggaaaacccccgccctcaagagtgtcttactt
catgaaatctggagatttggccatggcgtgttcgaactcggagaaggaaa
gcatactgtcattgtccagatctgactcactcaggacctgctgggacaga
ggagcttgtgaggagcctcaggctgacaggagatggatctcaagaggagg
gagaaaatggtctgtgtagaggaactacctaccacacgccagagtgtctc
agagcttctgccccacagagaggtgaaggtgtgtgagctaaggtaggtgt
agaggagactttcttctggaaggactcttctcatgggggggggggggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_30898474_30898895
seq2: B6Ng01-141H05.b_48_470 (reverse)

seq1  CACACACACACACACACACACACACACACACACACATGTGCACAAACTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACATGTGCACAAACTCC  50

seq1  TGAGATCTCTGGAGAACTAAATGCCAGTGAGAAGGTGGCTCCTCCTACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCTCTGGAGAACTAAATGCCAGTGAGAAGGTGGCTCCTCCTACCT  100

seq1  GGCCTCTGCCTGTCTTGATCTGTGCCAGACTTGTCAGACAAAAATGGCGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTGCCTGTCTTGATCTGTGCCAGACTTGTCAGACAAAAATGGCGC  150

seq1  AGACCAGTGTGGCTGCCCAACACTTTTATTTCTCACAGTTTTGATGTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGTGTGGCTGCCCAACACTTTTATTTCTCACAGTTTTGATGTCAG  200

seq1  AGAAATCCCAGACCAAGATACCCAAAGACTGGTCATTTGGTAAGAAACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCCCAGACCAAGATACCCAAAGACTGGTCATTTGGTAAGAAACAG  250

seq1  CCGGCTTCCTGCTTCCTGGTTTTTTGTTGACCTCCCGATGCCTGCTCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCTTCCTGCTTCCTGGTTTTTTGTTGACCTCCCGATGCCTGCTCAAC  300

seq1  CCAGGGATTGCATGTAGGGCCTCATGCATGCAAGGCGAGTGCTCTGCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGATTGCATGTAGGGCCTCATGCATGCAAGGCGAGTGCTCTGCTGA  350

seq1  GGCACAAGGTCCCGGGCCCTATATTTGGTTTTGAAACAGGGTGAC-CAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGCACAAGGTCCCGGGCCCTATATTTGGTTTTGAAACAGGGTGACGCAAA  400

seq1  TTACCCAGAATAGCCTTGAATTC  422
      |||||||||||||||||||||||
seq2  TTACCCAGAATAGCCTTGAATTC  423

seq1: chr5_30789714_30790118
seq2: B6Ng01-141H05.g_67_471

seq1  GAATTCCATAGGAAGAGAGAGATAGCCTTTGGTCCTGGGGAGACTAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAGGAAGAGAGAGATAGCCTTTGGTCCTGGGGAGACTAGAGA  50

seq1  ACCTTCACTCCCTCCAACCTTGGTGGAAAACCCCCGCCCTCAAGAGTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCACTCCCTCCAACCTTGGTGGAAAACCCCCGCCCTCAAGAGTGTC  100

seq1  TTACTTCATGAAATCTGGAGATTTGGCCATGGCGTGTTCGAACTCGGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCATGAAATCTGGAGATTTGGCCATGGCGTGTTCGAACTCGGAGA  150

seq1  AGGAAAGCATACTGTCATTGTCCAGATCTGACTCACTCAGGACCTGCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGCATACTGTCATTGTCCAGATCTGACTCACTCAGGACCTGCTGG  200

seq1  GACAGAGGAGCTTGTGAGGAGCCTCAGGCTGACAGGAGATGGATCTCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGGAGCTTGTGAGGAGCCTCAGGCTGACAGGAGATGGATCTCAAG  250

seq1  AGGAGGGAGAAAATGGTCTGTGTAGAGGAACTACCTACCACACGCCAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGAGAAAATGGTCTGTGTAGAGGAACTACCTACCACACGCCAGAG  300

seq1  TGTCTCAGAGCTTCTGCCCCACAGAGAGGTGAAGGTGTGTGAGCTAAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAGAGCTTCTGCCCCACAGAGAGGTGAAGGTGTGTGAGCTAAGGT  350

seq1  AGGTGTAGAGGAGACTTTCTTCTGGAAGGACTCTTCTCATGGGGGGGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTAGAGGAGACTTTCTTCTGGAAGGACTCTTCTCATGGGGGGGGGG  400

seq1  GGGAG  405
      |||||
seq2  GGGAG  405